Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04394 and BL00022
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04394___ytcQ.1.5803.seq
# -bsequence dna-align/BL00022___ytcQ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04394___ytcQ-BL00022___ytcQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04394___ytcQ-BL00022___ytcQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04394___ytcQ
# 2: BL00022___ytcQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1564
# Identity: 1109/1564 (70.9%)
# Similarity: 1109/1564 (70.9%)
# Gaps: 125/1564 ( 8.0%)
# Score: 3841.0
#
#
#=======================================
BSNT_04394___ 1 ATGGGAAACAAATGGAGGGTGC----TTTT--GATTGTGCTTGTACTGGC 44
|||||.||.||||||..|.|.| |||| |.|.|||||| .||||
BL00022___ytc 1 ATGGGGAAAAAATGGCTGATCCCGATTTTTGCGTTCGTGCTT---TTGGC 47
BSNT_04394___ 45 ACTCGGCGGAGTGCTGGCGGGCTGT------AAAGGGGCTGATCAGTCTT 88
|||||||.|||| .|||||| |..||.||.||.|||.|||
BL00022___ytc 48 ---CGGCGGACTGCT---TGGCTGTTCGAACAGCGGAGCAGACCAGGCTT 91
BSNT_04394___ 89 CGGCTGAAGG----CAAAG----------CTGGCC--CGGA-TTCAAAGG 121
|..| ||||| .|||| ||.||| .||| ||
BL00022___ytc 92 CTTC-GAAGGAGGAGAAAGTCGATTTGAACTCGCCTTTGGACTT------ 134
BSNT_04394___ 122 TAAAGCTGTCTTGGATGGCGATTTTGTATCACCAGCAGCCGCCGAAAGAC 171
.||| |||||||.|||..|.||.||.||||||||||||||.|||
BL00022___ytc 135 --GAGC-----TGGATGGTGATCCTTTACCATCAGCAGCCGCCGAAGGAC 177
BSNT_04394___ 172 AGGGCGATTAAAGAAATTGAAAAGCTGACAAATACAGAACTCGACATCAC 221
|.||||||||||.||||.||..|.||.||.|||||..|.|||||..|.|.
BL00022___ytc 178 ACGGCGATTAAAAAAATCGAGGAACTCACCAATACTAAGCTCGATTTAAT 227
BSNT_04394___ 222 CTGGGTTCCAGACGCGGTGAAAGAAGACAGGCTGAATGCGGCGCTTGCAG 271
.|||||.||.||.|||||.|||||.|||.|..|.||..|.|||||.||.|
BL00022___ytc 228 GTGGGTGCCTGATGCGGTAAAAGAGGACCGTTTAAACTCAGCGCTCGCCG 277
BSNT_04394___ 272 CGGGCAATCTTCCGCAAATCGTGACGATCCAGGATATTAAAAATTCGTCA 321
|.||.||.||.|||.||.||||.||.||.|||||.|||||||||||.||.
BL00022___ytc 278 CCGGAAACCTGCCGAAAGTCGTCACCATTCAGGACATTAAAAATTCATCT 327
BSNT_04394___ 322 GTCATGAATGCCTTCCGGTCAGGAATGTTCTGGGAAATCGGTGATTATAT 371
|||||||||||.|||.|.||.||.|||||.||||||.||||...||||.|
BL00022___ytc 328 GTCATGAATGCATTCAGATCGGGGATGTTTTGGGAAGTCGGACCTTATTT 377
BSNT_04394___ 372 CAAGGATTATCCCAACTTAAACAAAATGAACAAACTCATTAATAAAAATG 421
.|||||||||||.||.||||.|||.||||||||.||.||.||||||||.|
BL00022___ytc 378 AAAGGATTATCCGAATTTAAGCAAGATGAACAAGCTGATCAATAAAAACG 427
BSNT_04394___ 422 TGACAATTGACGGCAAGCTCTACGGGATATACAGAGAGCGCCCGCTTTCC 471
...||||.|||||.|||||.||.||.||.|||||.|||||||||.|.||.
BL00022___ytc 428 CTTCAATCGACGGAAAGCTTTATGGCATCTACAGGGAGCGCCCGTTATCA 477
BSNT_04394___ 472 AGACAGGGGATTGTCATTCGGAAGGACTGGCTGGACAA--TT----TAAA 515
|||||||||||.|||||.||.||.||||||||.||||| || |..|
BL00022___ytc 478 AGACAGGGGATCGTCATCCGTAAAGACTGGCTTGACAACCTTGGACTCGA 527
BSNT_04394___ 516 TCTGAAAACCCCGAAAAC-GTTGGATGAGCTTTATGAAGTGGCCAAAGCA 564
|.|| |||||.|| ||| |||||.|||||.|||...||.||.|||
BL00022___ytc 528 TATG------CCGAAGACAGTT-GATGAACTTTACGAAACAGCGAAGGCA 570
BSNT_04394___ 565 TTTACGGAGGACGACCCGGA-CAAGGATGGGAAAGATGATACATTCGGGC 613
|||||.||..|.||.||.|| ||| .|.||||||.|.|||||..||||..
BL00022___ytc 571 TTTACAGAAAAAGATCCTGATCAA-AACGGGAAAAACGATACGATCGGCT 619
BSNT_04394___ 614 TGGCAGACCGTAATGACTTGATTTACGGCGCGTTTAAAACGATT-GGCTC 662
|.||.|||.|.||.||.|||||.||||||||.|||||||| ||| ||.||
BL00022___ytc 620 TTGCCGACAGAAACGATTTGATCTACGGCGCCTTTAAAAC-ATTGGGGTC 668
BSNT_04394___ 663 GTATGAAGGCATGCCGACAGATTGGAAGGAATCGGGCGGCAAATTCACGC 712
.|||...|||||||||||.||||||.|||||...|.||||||.|||||||
BL00022___ytc 669 CTATATGGGCATGCCGACTGATTGGGAGGAAAAAGACGGCAAGTTCACGC 718
BSNT_04394___ 713 CTGATTTCATGACACAGGAATACAAAGACACAATGAACTATATGAAAAAG 762
||||.|||||||||.|.||.||||..||.||.|||||.||||||||||||
BL00022___ytc 719 CTGACTTCATGACAAAAGAGTACATGGATACGATGAAATATATGAAAAAG 768
BSNT_04394___ 763 CTGCGTGATAACGGGTATATGAATAAGGATTTTCCCGTCACAAGCAAAAC 812
|||..||||.|.|||...||.||.||.||.|||||.||.||.||||||||
BL00022___ytc 769 CTGTATGATGAAGGGCTGATCAACAAAGACTTTCCGGTGACGAGCAAAAC 818
BSNT_04394___ 813 CCAGCAGCAGGAGCTGTTTTCGCAAGGAAAAGCCGGAATTTATATTGGCA 862
.||||||||.||..|||||||.|||||.||.|||||.||||||.|.||.|
BL00022___ytc 819 GCAGCAGCAAGAAATGTTTTCACAAGGGAAGGCCGGCATTTATGTCGGAA 868
BSNT_04394___ 863 ATATGGTAGATGCGGTCAATCTGCGCGACCA---TGCCTCTGATAAATCG 909
|||||||.|||||.||||||||..|.||||| ||.|..|||||||
BL00022___ytc 869 ATATGGTTGATGCCGTCAATCTAAGAGACCAGTCTGTCGATGATAAA--- 915
BSNT_04394___ 910 ATGAAGCTCGAGATCGTCAACCGTATAAAAGGCCCAGATGGGAAAGAGCG 959
|||.|.||.||||||.||||.||.||.|||||.||.||.||.||.||.||
BL00022___ytc 916 ATGGAACTTGAGATCATCAATCGGATCAAAGGGCCGGACGGAAAGGAACG 965
BSNT_04394___ 960 GGTATGGGCATCAGGAGGCCATAACGGCGTGTTTGCTTTCCCGAAAACGA 1009
.||.|||||||||||.||.||||||||..|.|||||.|||||||||||.|
BL00022___ytc 966 CGTCTGGGCATCAGGCGGGCATAACGGAATCTTTGCCTTCCCGAAAACTA 1015
BSNT_04394___ 1010 GTGTGAAAACGGAAGCTGAGCTTAAACGGATCTTGGCTTTTTTTGACCGA 1059
|.||.|||||.|||...|||||.||..||||..||||.|||||.|||||.
BL00022___ytc 1016 GCGTCAAAACAGAAAAAGAGCTGAAGAGGATTCTGGCCTTTTTCGACCGG 1065
BSNT_04394___ 1060 ATTGCCGAAGAAGATGTCTATAGCCTGATGACTTATGGCATTGACGGCGT 1109
||.||||||||.|||||.||.||.||||||||.||.||.||.||.|||||
BL00022___ytc 1066 ATCGCCGAAGAGGATGTTTACAGTCTGATGACATACGGGATCGAAGGCGT 1115
BSNT_04394___ 1110 TCATTACAACAAAGGTGAGGACAAAAC-GTTCACACGCA-----AAGAAA 1153
|||.||.||.||||..| |||..|||| .||||.|||.| .|||||
BL00022___ytc 1116 TCACTATAAAAAAGAAG-GGAATAAACAATTCAAACGGATCGACGAGAAA 1164
BSNT_04394___ 1154 GCCAGGTAAAAGACTGGCAGACTGATATTCAGCCGCT----------GTC 1193
.|.||||||||||||.|.||.||||||||||| |||
BL00022___ytc 1165 -----CTGAAAGACTGGCAGGCGGAAATTCAGCCGCTCGTTTCTCTCGTC 1209
BSNT_04394___ 1194 CGCCTTAATTGCCATTGATAAAGC-CTACTTAAAAAACACTGGAGATCCG 1242
|.||||||| |||| .||.||.|||||.||.||.||||||
BL00022___ytc 1210 ----------GGCATTGAT-AAGCAATATTTGAAAAATACGGGCGATCCG 1248
BSNT_04394___ 1243 CTTCGGACGGCGTACGAGGAGCTGACCGAGGACAATGAAAAGATTATCGT 1292
||.||.||....||.||.||||||||.|||||||||.|..|.||.|||||
BL00022___ytc 1249 CTCCGCACAAAATATGAAGAGCTGACAGAGGACAATAACGAAATCATCGT 1298
BSNT_04394___ 1293 CTCAAACCCGGCTGAAAGCCTTTATT------CCGCATCGGAGTCGGAAC 1336
||||||||||||.||||||||.||.| ||||| ||.|||.
BL00022___ytc 1299 CTCAAACCCGGCCGAAAGCCTGTACTCACCGGCCGCA------TCTGAAA 1342
BSNT_04394___ 1337 GGGGGGATGAACTGAAGAAAATCATTGATGACGCGACTTATAAATATATG 1386
|.||.|||||||||.|.||.|||||||||||.||.||.||..|||..||.
BL00022___ytc 1343 GAGGCGATGAACTGCAAAAGATCATTGATGATGCCACATACCAATTCATT 1392
BSNT_04394___ 1387 ATTGGAGACATCACAGAAAGCCAGTTCGATAAAGAAGTGGAAAAATGGGA 1436
.|.||..|.||||..||||||||||||||.||||..||.|||||||||..
BL00022___ytc 1393 CTCGGCAAAATCAATGAAAGCCAGTTCGAGAAAGCGGTTGAAAAATGGCG 1442
BSNT_04394___ 1437 GTCAAGCGGAGGAAAACAAATTATTCAGGAATACGAAGAAGCATTTAAAC 1486
..|.|.|||.|||||.|||.|.||..|.|||||.||.||..||||||||.
BL00022___ytc 1443 CACGAACGGCGGAAATCAAGTCATAGAAGAATATGAGGAGTCATTTAAAA 1492
BSNT_04394___ 1487 AAACAAAATAA--- 1497
||.||.||.||
BL00022___ytc 1493 AAGCAGAAAAATAG 1506
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