Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04385 and BL00026

See Amino acid alignment / Visit BSNT_04385 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:33
# Commandline: needle
#    -asequence dna-align/BSNT_04385.1.5803.seq
#    -bsequence dna-align/BL00026___yteT.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04385-BL00026___yteT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04385-BL00026___yteT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04385
# 2: BL00026___yteT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1375
# Identity:     690/1375 (50.2%)
# Similarity:   690/1375 (50.2%)
# Gaps:         494/1375 (35.9%)
# Score: 2231.5
# 
#
#=======================================

BSNT_04385         1 ---------------------------------------------ATGTT      5
                                                                  |||||
BL00026___yte      1 ATGAAAAAATATGCGATATGCGGTCTGAGCGGCCGCGCTTTTAACATGTT     50

BSNT_04385         6 TATCAAACCGCTGTTGGAGCGGTTTTCAACTCATTATGAGATTACGGGA-     54
                     ||||.|.||.|||.|||                    ||.|.||||||| 
BL00026___yte     51 TATCGAGCCTCTGGTGG--------------------GAAAATACGGGAA     80

BSNT_04385        55 --------------TTGC-----TGGATGCCGATCC----------GAAA     75
                                   .|||     ||||...||||||          ||| 
BL00026___yte     81 AGAAAACCGCATCGCTGCGCTCTTGGACATCGATCCGCTGAGGGAGGAA-    129

BSNT_04385        76 CGTTTTGCCGTTTGCAAAAAGAAA--TTTCCCGAGC-TGGCCCACGTGCC    122
                              ||.|||  |||||||  |||||.|.|| |.|||| |||.||
BL00026___yte    130 ---------GTCTGC--AAAGAAAGGTTTCCGGCGCTTCGCCC-CGTCCC    167

BSNT_04385       123 CGAGTTTAGCGAAG---ATGCTTTTGACGAGATGATGCGCGTGTCA----    165
                        ||||..|||||   |.||.|||..|||.||     ||.||.||    
BL00026___yte    168 ---GTTTTTCGAAGAGAAAGCGTTTACCGAAAT-----GCTTGACAAAAT    209

BSNT_04385       166 -AAGCCTGATATCGTCATTGTGGCAGGCAGGGACGATACGCATGTCAC--    212
                      |||||.||...|.|.|||||.||||||.|.||.|||||||||||| |  
BL00026___yte    210 CAAGCCGGACGCCATTATTGTAGCAGGCCGTGATGATACGCATGTC-CGC    258

BSNT_04385       213 -ATATATTGTAAAAAGC-CTT------CAGTGGAATACAGATGTAATTAC    254
                      ||||||||     .|| |||      |||    |||..||.||.||.||
BL00026___yte    259 TATATATTG-----GGCGCTTTACGGGCAG----ATATTGACGTGATCAC    299

BSNT_04385       255 TGAAAAACCAATGGTGACAACAGTGCAGGATGCGAATCTG--GTGCTTGA    302
                     ||||||.||.|||||||||||.|..|.|||||||  .|.|  |||.|..|
BL00026___yte    300 TGAAAAGCCGATGGTGACAACGGCACGGGATGCG--GCAGCCGTGTTAAA    347

BSNT_04385       303 AGCGGAGGCCAAAAGCGAAGGAAAAGTCACCGTCGCGTTTAACTATCGCT    352
                     |||.||.|||.|.|||.||||||||||.|||||..|||||||||||||||
BL00026___yte    348 AGCCGAAGCCGAGAGCAAAGGAAAAGTGACCGTTACGTTTAACTATCGCT    397

BSNT_04385       353 ACAGCCCGTTTCATCGGAAAATAAAAGAAATGATTCTGGACGGAAAAATA    402
                     |||..||||..||.||.||.||.|||||..||||.||.||||||||..|.
BL00026___yte    398 ACAATCCGTACCACCGCAAGATCAAAGAGCTGATACTTGACGGAAAGCTT    447

BSNT_04385       403 GGCAGGGTCACCTCCGTTGATTTAAATTGGTATATTGATACGTATCATGG    452
                     ||||.|.|.||.||.||||||||.||.|||||.||.|||||||||||.||
BL00026___yte    448 GGCACGATTACGTCGGTTGATTTGAACTGGTACATCGATACGTATCACGG    497

BSNT_04385       453 CGCCAGCTATTTTAAACGCTGGAACAGGTCGAGA-CAGTTTTCCGGGGGT    501
                     |||.||||||||||||||||||||||||..|||| || ||.||.||.|||
BL00026___yte    498 CGCAAGCTATTTTAAACGCTGGAACAGGATGAGAGCA-TTCTCAGGCGGT    546

BSNT_04385       502 CTTTCTGTCCATAAATCAACACATCACTTTGATCTCGTCAATTGGTGGCT    551
                     |||||.||||||||.|||||.|||||.||.|||||.||||||||||||||
BL00026___yte    547 CTTTCCGTCCATAAGTCAACCCATCATTTCGATCTTGTCAATTGGTGGCT    596

BSNT_04385       552 CGGGCAAAATCCGGAAGAGGTATTTGCTTATGGCGCCTTGAATTACTATG    601
                     .|..||||..||....|||||.|||||.||.||||...||.|.|||||  
BL00026___yte    597 TGATCAAACGCCCAGCGAGGTTTTTGCCTACGGCGGTCTGTACTACTA--    644

BSNT_04385       602 GGCCGGAC----------AGTGAGTGGAACCCCTTGCCGGAAGAAGACGG    641
                        |||||          |.|||.|           ||.|||.|||  ||
BL00026___yte    645 ---CGGACCCCGCGGCGAAATGAAT-----------CCTGAAAAAG--GG    678

BSNT_04385       642 G-----CGTTTTTGCGGGACGTGCCGGGTCAAAGAA-AAATGCCACTACT    685
                     |     ||.|.||||||.||.||||..||| ||||| |||||||.|||.|
BL00026___yte    679 GAAAACCGCTATTGCGGAACATGCCATGTC-AAGAAGAAATGCCGCTATT    727

BSNT_04385       686 ATTCAAGGTGGCATCC--CCGTTCCTCTAAAGCTTCTATAAAGGATGATC    733
                     ||...||||||||..|  .||..||.|              ||||.||.|
BL00026___yte    728 ATATGAGGTGGCAGGCAGGCGACCCGC--------------AGGACGACC    763

BSNT_04385       734 ATCTCGAAGCAGGAGACCAGT-----CCAGC-----TTATATACTGCATA    773
                     ||.||       .||||||.|     |||||     .|.|||||.|..||
BL00026___yte    764 ATGTC-------AAGACCAATGAAAGCCAGCATCTGCTCTATACCGATTA    806

BSNT_04385       774 CAGGCCTGACGCGTGTATTTTTGACGAGGAAATTGACATCGAGGATACGT    823
                     |||||||||||||||||||||.||.||.|||||.||||||||||||||||
BL00026___yte    807 CAGGCCTGACGCGTGTATTTTCGATGAAGAAATCGACATCGAGGATACGT    856

BSNT_04385       824 ACGTGGCGGCAGTCAAATATGATGGC---GGCGCACTGTTAAGCTACTCG    870
                     |.|..||.|...|.||||   |.|||   ||.||.|||.|.|..|||||.
BL00026___yte    857 ATGCAGCCGTTTTGAAAT---ACGGCAAAGGGGCGCTGCTGAATTACTCC    903

BSNT_04385       871 ATTATTTTTTCGGCCCCGTATGAAGGTTACCGGCTGACGATCAACGGCAC    920
                     .||..||||||.||||||||||||||.||||||||..|.||||||||.||
BL00026___yte    904 GTTCATTTTTCAGCCCCGTATGAAGGCTACCGGCTTGCAATCAACGGGAC    953

BSNT_04385       921 AAAAGGGCGTATTGAATCAAATGAATTTCA-----CGTCCAGAATTCCGT    965
                     |||.||..|..|||||.||.|.||||.|||     ||.|.|||.|.||.|
BL00026___yte    954 AAAGGGAAGGCTTGAAACACAGGAATATCATGCTCCGGCAAGAGTCCCAT   1003

BSNT_04385       966 TTGCTTTTCCTGA-------------------------------------    978
                     |||...||||.||                                     
BL00026___yte   1004 TTGAAGTTCCCGAACAGACCATCGATTATTATCCGCTGTTTGAATCGAAA   1053

BSNT_04385       978 --------------------------------------------------    978
                                                                       
BL00026___yte   1054 GAAACGATTCGCGTCGTCAGGCAGCCCGGCGGGCATGGCGGAGGAGACCC   1103

BSNT_04385       978 --------------------------------------------------    978
                                                                       
BL00026___yte   1104 GCTGCTTTTGGAGGAGCTGTTTGGCGGAGGAGACCCTTTGAGGAATTACG   1153

BSNT_04385       978 --------------------------------------------------    978
                                                                       
BL00026___yte   1154 ACATTCTGGCCGGTGCCGAAGCAGGCGCCTATTCAATTGCAGCCGGCGAG   1203

BSNT_04385       978 --------------------------------------------------    978
                                                                       
BL00026___yte   1204 GCATTGTGGCGCTCCATCAAAGAAAAAAAGCCGATAGGAATCAGTGAACT   1253

BSNT_04385       978 -------------------------    978
                                              
BL00026___yte   1254 TCTGCATACCCGGCAATATACATAA   1278


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