Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04353 and BL00044

See Amino acid alignment / Visit BSNT_04353 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04353___malS.1.5803.seq
#    -bsequence dna-align/BL00044___malS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04353___malS-BL00044___malS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04353___malS-BL00044___malS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04353___malS
# 2: BL00044___malS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1765
# Identity:    1254/1765 (71.0%)
# Similarity:  1254/1765 (71.0%)
# Gaps:         131/1765 ( 7.4%)
# Score: 4285.5
# 
#
#=======================================

BSNT_04353___      1 GTGA-----AACAATTCAAAGTAACAAACGAAGGAGACATTCAAACAAC-     44
                     ||||     ||.||.|.|||..|||||..||..|||||         .| 
BL00044___mal      1 GTGAGCCACAATAAATTAAATGAACAAGTGATCGAGAC---------GCG     41

BSNT_04353___     45 ATTAAGAGGCCTTGAAGTGCTCTCTGTTCCTTTTTTGAACAAAGGTGTTG     94
                     .||||||||..|||||||.||..|...|||..|.|||||||||||.||||
BL00044___mal     42 GTTAAGAGGATTTGAAGTCCTTGCGACTCCCCTGTTGAACAAAGGGGTTG     91

BSNT_04353___     95 CTTTTACTGAGGAAGAAAGAAAAGAACTTGGTTTAAAAGGCTTTCTGCCG    144
                     |.||..||..|||.|||||..|.|..||.||.||.|.|||.||.||.||.
BL00044___mal     92 CCTTCCCTCCGGAGGAAAGGGATGCTCTCGGCTTGACAGGATTGCTTCCT    141

BSNT_04353___    145 CCCAAGGTATTAACAATTGACGATCAGGCGAAAAGAGCGTATGAACAATA    194
                     ||||||||..|.||..||||.||.|||||.|||.|.||||||.||||  .
BL00044___mal    142 CCCAAGGTGCTGACGCTTGAAGAACAGGCAAAACGGGCGTATAAACA--G    189

BSNT_04353___    195 TTCC--GCACAGCCTGACGATTTGAGCAAAAATGTCTATTTAACTGCGCT    242
                     ||||  .||||||||||.||||||||||||||.|||||||||||.|||||
BL00044___mal    190 TTCCAATCACAGCCTGATGATTTGAGCAAAAACGTCTATTTAACGGCGCT    239

BSNT_04353___    243 GCACGATCGGAATGAAACGCTGTTTTACCGCCTGTTAAATGACCATTTAG    292
                     .||.|||||.||||||..||||||.|||.|.||..|.||.||||||.|..
BL00044___mal    240 TCATGATCGAAATGAAGTGCTGTTCTACAGGCTTCTGAACGACCATATGA    289

BSNT_04353___    293 GGGAAATGCTCCCGATTGTCTACACACCGACAGTCGGAACGGCAATCCAG    342
                     ..||||||||.|||||||||||.||.|||||.||||||||||||||.|||
BL00044___mal    290 CAGAAATGCTGCCGATTGTCTATACCCCGACTGTCGGAACGGCAATACAG    339

BSNT_04353___    343 AGATACAGCCATGAATACAGAAAACCACGAGGGCTCTATCTGTCAATCGA    392
                     ..|||||||||||||||||||||.||.||.|||||.|.|.||||..|..|
BL00044___mal    340 CAATACAGCCATGAATACAGAAAGCCGCGGGGGCTGTTTTTGTCGGTTAA    389

BSNT_04353___    393 TGACCCGGACGGTATGAAAGAAGCATTTAAACAGTAT--------AAAGA    434
                     ||||||.||.||.||||||...||||||.|| |.|.|        |||| 
BL00044___mal    390 TGACCCTGAAGGCATGAAAACGGCATTTGAA-AATCTGGCCGCTAAAAG-    437

BSNT_04353___    435 TCAAAGCGATAC-GATCGATTTAATTGTTGCAACTGATGCGGAAGGAATT    483
                        ||||    | |||||||||.||.||.||.||||||||.|||||||||
BL00044___mal    438 ---AAGC----CGGATCGATTTGATCGTGGCCACTGATGCTGAAGGAATT    480

BSNT_04353___    484 TTAGGGATCGGTGACTGGGGCGTCGGAGGAATCGCGATTTCTATTGGAAA    533
                     .|.||.|||||.||.|||||.|||||.||.|||||.|||||.||.|||||
BL00044___mal    481 CTCGGAATCGGGGATTGGGGAGTCGGCGGCATCGCCATTTCGATCGGAAA    530

BSNT_04353___    534 GCTGGCGGTTTATACAGCGGCTGCGGGCATTGATCCGAGCAGAGTGCTGG    583
                     |||.||.||||||||.||.|||||||||||.|||||.|.|||.||.|||.
BL00044___mal    531 GCTTGCTGTTTATACTGCAGCTGCGGGCATCGATCCTAACAGGGTCCTGC    580

BSNT_04353___    584 CTGTTGTTTTAGATGCGGGGACAAATCAGGAGAGCCTCTTGAACGATCCG    633
                     |.||.||..|.|||||||||||.||.|||||.||.||..|||||||||||
BL00044___mal    581 CAGTAGTCATTGATGCGGGGACGAACCAGGAAAGGCTTCTGAACGATCCG    630

BSNT_04353___    634 CTTTATGTCGGCAACCAGCATTCTAGAGTGCGCGGAGAACGCTATGACCA    683
                     |||||||||||.||.||||||||.||..|..|.||.||.||.|||||...
BL00044___mal    631 CTTTATGTCGGGAATCAGCATTCGAGGATCAGGGGCGAGCGTTATGAATC    680

BSNT_04353___    684 ATTTATTGACGACTACGTT----GCGCTGGCGAGAGAAACATTTCCGAAT    729
                     .||||||||..|.||||||    .|||...||||    ||.||||||...
BL00044___mal    681 GTTTATTGATCAATACGTTCAAATCGCAACCGAG----ACGTTTCCGGGC    726

BSNT_04353___    730 GCATTGCTGCATTGGGAGGATTTCGGGGCGAAAAACGCTCG-AAGCATTT    778
                     |..||||||||.|||||.||||||||..||.|.|||||.|| .|| ||||
BL00044___mal    727 GTTTTGCTGCACTGGGAAGATTTCGGAACGCAGAACGCGCGTCAG-ATTT    775

BSNT_04353___    779 TGAAACGCTATAAAGATAAAGTGTGTACCTTCAATGATGATATCCAAGGA    828
                     |||||...||.|||||.|||.|.||.|||||.||||||||.||.|||||.
BL00044___mal    776 TGAAAAAATACAAAGACAAAATTTGCACCTTTAATGATGACATTCAAGGC    825

BSNT_04353___    829 ACTGGCGCTGTTTCTTTGGCCGCAGT-CTTATCCTGTGC-------AAAA    870
                     ||.||.||||||.|..|.||.||.|| ||       |||       ||||
BL00044___mal    826 ACAGGAGCTGTTACCCTCGCAGCGGTGCT-------TGCGGCCGTTAAAA    868

BSNT_04353___    871 GCGTCTAAAGTTCCATTGAGGGATCACAGAGTTGTTATATTCGGAGCGGG    920
                      ..||.|||.|.||..|||.||||||.|.|||.||.|||||.||||||||
BL00044___mal    869 -TATCAAAAATGCCGCTGAAGGATCATAAAGTGGTCATATTTGGAGCGGG    917

BSNT_04353___    921 AACGGCAGGAATCGGAATTGCCGAACAGCTGCGGGAAGCATTGGTGCGCG    970
                     .|||||.||||||||.|.|||.||.||..|.||.|..|||.|.||.|..|
BL00044___mal    918 GACGGCCGGAATCGGCAATGCTGAGCAAATTCGCGCCGCACTCGTTCAAG    967

BSNT_04353___    971 AGGGACTGAGTGAAGAAGAATCATACAAGCGCTTCTGGTGCATAGACAGA   1020
                     |||||.||...|||||.|||||||||...||.||.|||||..|.||..|.
BL00044___mal    968 AGGGAGTGTCGGAAGAGGAATCATACCGCCGTTTTTGGTGTGTTGATCGG   1017

BSNT_04353___   1021 AACGGGCTGTTAACAGATGATATGGATCAGCTTCTTG------ATTTCCA   1064
                     |||||..||.|.||||||||||||    |.|..||||      |||  ||
BL00044___mal   1018 AACGGTTTGCTGACAGATGATATG----AACGACTTGCAGGACATT--CA   1061

BSNT_04353___   1065 AAAGCCGTATGCTCGTTCGGCTGATGAAGTAAAGGATTATCAG-CGGAAC   1113
                     |.|.||||||||..|..|.|||||.||.|||||.||.| |||| ||||||
BL00044___mal   1062 ACAACCGTATGCAAGGCCTGCTGACGAGGTAAAAGACT-TCAGCCGGAAC   1110

BSNT_04353___   1114 GGAGACGGCGGAGGC-ATTGATCTTCTTGAAGTGGTCCGGCAGGCAAAA-   1161
                     || ..|||.|||.|| ||||||||.||.||.|||||        .|||| 
BL00044___mal   1111 GG-CCCGGGGGATGCAATTGATCTGCTCGAGGTGGT--------TAAAAG   1151

BSNT_04353___   1162 -------CCGACGATCCTGATCGGCACATCTACGGTTTCCGGCGCTTTCA   1204
                            ||.||.||..||||.||.||.||.|||||.||.|||||.||.|
BL00044___mal   1152 AGTGCAGCCTACCATTTTGATTGGAACCTCGACGGTATCGGGCGCATTTA   1201

BSNT_04353___   1205 CTGAAGAAATTGTAAAAGAAATGGCGTCACATGTGAAACGGCCCGCGATT   1254
                     |.||.||||||||||||||||||||....||||||||||||||.||.||.
BL00044___mal   1202 CAGAGGAAATTGTAAAAGAAATGGCAAAGCATGTGAAACGGCCGGCTATA   1251

BSNT_04353___   1255 TTGCCAATGTCAAATCCGACAACTCTTTCTGAAGCAAAGCCGGAGGATTT   1304
                     ||.||.|||||.||||||||..|..|.||||||||||.|||.||.|||||
BL00044___mal   1252 TTCCCGATGTCCAATCCGACGCCGTTATCTGAAGCAAGGCCTGAAGATTT   1301

BSNT_04353___   1305 AATCGAATGGACAGAAGGCCGTGCGCTGATCACGACAGGAAGCCCGTTCC   1354
                     .|||.|.|||||.|||||.||.|||||..||.|.||||||||||||||..
BL00044___mal   1302 GATCAATTGGACGGAAGGGCGGGCGCTCGTCGCCACAGGAAGCCCGTTTG   1351

BSNT_04353___   1355 CGCCAGTTGAATATAACGG----AGTTA--CGTATCATATCGGGCAGGCA   1398
                     ||||.||.|||||.|.|||    .||||  ||      |||||.|||||.
BL00044___mal   1352 CGCCTGTGGAATACAGCGGCACCCGTTATGCG------ATCGGCCAGGCG   1395

BSNT_04353___   1399 AACAACGCGCTTGTCTTCCCTGGTCTCGGTCTTGGAACGATTGTTACCAA   1448
                     ||.||.||..||||.|||||.||.||.||.||.||||||.|.||..|.||
BL00044___mal   1396 AATAATGCCTTTGTATTCCCCGGCCTTGGGCTCGGAACGCTCGTATCAAA   1445

BSNT_04353___   1449 ATCAAAATTAATTACCGACGGCATGTTTGAAG-CATGTGCCCGG--GCAA   1495
                     |.|||.|.|.|||||.|||..|||||||.|.| ||   ||.|||  ||.|
BL00044___mal   1446 AGCAAGACTGATTACGGACAACATGTTTTACGCCA---GCGCGGCTGCGA   1492

BSNT_04353___   1496 TCGCAGGTATGGTCAATGTCGGG--GTGCCTGGCGCGCCGATGCTTCCGA   1543
                     ||||.||||||||..|| .||||  | |||.|||||..||.|.||||||.
BL00044___mal   1493 TCGCGGGTATGGTTGAT-ACGGGCCG-GCCCGGCGCCGCGCTTCTTCCGG   1540

BSNT_04353___   1544 AAGTTGAAGATTTGCGCACTGTTTCGGCAACCGTTG---CGGTTGAAGTC   1590
                     |||||||.|||||||||||.|||||.||||||||.|   |||.|   |||
BL00044___mal   1541 AAGTTGAGGATTTGCGCACGGTTTCCGCAACCGTGGCAACGGCT---GTC   1587

BSNT_04353___   1591 GCAAAAACCGCGAT-GAAGGAAGGCGTTGCTACGGAA---GAGCCAGAAG   1636
                     ...|||.|.||.|| ||| ||.||.||||   |.|||   |||||.||.|
BL00044___mal   1588 ATCAAAGCAGCCATAGAA-GACGGAGTTG---CAGAAAACGAGCCGGACG   1633

BSNT_04353___   1637 ACATTATACAGGCAGTGCAGGATGCGATGTGGTATCCGGTATACAAACCG   1686
                     |..|.||.|||||.||||||||||||||||||.|||||||.|||...|||
BL00044___mal   1634 ATGTGATTCAGGCGGTGCAGGATGCGATGTGGCATCCGGTCTACCGGCCG   1683

BSNT_04353___   1687 ATTCGCGCGATATAA   1701
                     ||||||||.||||||
BL00044___mal   1684 ATTCGCGCCATATAA   1698


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