Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04440 and BL00062

See Amino acid alignment / Visit BSNT_04440 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_04440___ytqA.1.5803.seq
#    -bsequence dna-align/BL00062___ytqA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04440___ytqA-BL00062___ytqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04440___ytqA-BL00062___ytqA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04440___ytqA
# 2: BL00062___ytqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 990
# Identity:     764/990 (77.2%)
# Similarity:   764/990 (77.2%)
# Gaps:          42/990 ( 4.2%)
# Score: 2882.5
# 
#
#=======================================

BSNT_04440___      1 GTG-ATGCAGAACAATCCTTTTCCTTATTCAAATACGGAAAAACGCTATC     49
                     .|| || ||||||||.||||||||.|||.|.||.|..||||||||.||||
BL00062___ytq      1 TTGCAT-CAGAACAACCCTTTTCCATATACGAACAGTGAAAAACGATATC     49

BSNT_04440___     50 ATACATTGAATTATCATCTCAGAGAACATTTCGGCCATAAGGTGTTTAAA     99
                     ||||||.||||||||||.|.|||.|.||||||||.|||||.|||||||||
BL00062___ytq     50 ATACATGGAATTATCATTTAAGAAATCATTTCGGTCATAAAGTGTTTAAA     99

BSNT_04440___    100 GTGGCGCTTGACGGCGGTTTTGACTGTCCAAATCGGGATGGCACCGTAGC    149
                     ||.||.||||||||.||.||||||||.||.||.||.||.||.||.||.||
BL00062___ytq    100 GTCGCCCTTGACGGAGGCTTTGACTGCCCGAACCGCGACGGTACGGTCGC    149

BSNT_04440___    150 CCACGGAGGCTGTACGTTTTGCAGCGCAGCAGGCTCCGGAGATTTTGCTG    199
                     .|||||.||.||.||.|||||||||||.|||||...||||||.|||||.|
BL00062___ytq    150 ACACGGCGGATGCACATTTTGCAGCGCCGCAGGGAGCGGAGACTTTGCGG    199

BSNT_04440___    200 GAAACCGGACCGATGATTTAATTACGCAAT---------TCCACGACATC    240
                     |||||||..||||.|||.|.|||||.||||         |.|.|||||  
BL00062___ytq    200 GAAACCGCGCCGACGATCTGATTACCCAATTTAATGAAGTGCGCGACA--    247

BSNT_04440___    241 AAAAACCGCATGCACGAAAAATGGAAGGACGGCAAGTACATCGCTTATTT    290
                            |.|||||.|||||||||||.||||||||.|||||.||.||.||
BL00062___ytq    248 -------GAATGCATGAAAAATGGAAAGACGGCAAATACATGGCGTACTT    290

BSNT_04440___    291 TCAGGCTTTCACAAACACTCACGC-CCCGGTTGAG-GTGCTTCGTGAGAA    338
                     |||.||.||.||.||.||.||||| ||||  |.|| ||.|||||.||.||
BL00062___ytq    291 TCAAGCATTTACGAATACGCACGCTCCCG--TCAGCGTTCTTCGCGAAAA    338

BSNT_04440___    339 ATTCGAATCCGTCCTCG--CTTTAGATGATGTGGTCGGCATTTCGATCGC    386
                     ||.|||..|||||||||  |||  ||.|..||.||||||.||||.|||||
BL00062___ytq    339 ATACGAGACCGTCCTCGGCCTT--GACGGCGTAGTCGGCCTTTCAATCGC    386

BSNT_04440___    387 CACACGCCCGGACTGTCTGCCTGATGATGTCGTTGATTA-CTTGGCAGAG    435
                     .||.||.|||||.|||||.|||||.|||||.||.||.|| ||| ||.|||
BL00062___ytq    387 TACCCGGCCGGATTGTCTACCTGACGATGTTGTCGAATATCTT-GCCGAG    435

BSNT_04440___    436 CTGAATGAACGCACCTATTTGTGGGTGGAGCTTGGGCTTCAAACAGTTCA    485
                     ||.|||||||||||.||..|.|||||||||||.||.|||||.||.|||||
BL00062___ytq    436 CTTAATGAACGCACATACCTCTGGGTGGAGCTCGGCCTTCAGACCGTTCA    485

BSNT_04440___    486 TGAACGGACTGCACTTCTGATCAACCGCGCACATGATTTTAACTGCTATG    535
                     |||||||||.||...|.|||||||||||||.||||||||..|||||||.|
BL00062___ytq    486 TGAACGGACGGCTGATTTGATCAACCGCGCCCATGATTTCGACTGCTACG    535

BSNT_04440___    536 TGGAAGGCGTCAATAAATTAAGAAAACACGGCATACGTGTCTGCTCGCAT    585
                     ||||||||||.||.||..|.||.|||||||||||.||.||||||||.||.
BL00062___ytq    536 TGGAAGGCGTGAACAAGCTGAGGAAACACGGCATCCGGGTCTGCTCCCAC    585

BSNT_04440___    586 ATTATCAATGGGCTGCCTTTGGAAGACCGGGACATGATGATGGAAACGGC    635
                     ||.||.||.||.||||||.|.||||||||.|.|||||||||||||||.||
BL00062___ytq    586 ATCATTAACGGACTGCCTCTCGAAGACCGCGGCATGATGATGGAAACCGC    635

BSNT_04440___    636 AAAGGCCGTCGCAGATTTGGATGTCCAGGGCATTAAAATCCATCTGCTTC    685
                     |||.||||||||.||||||||.||.|||||.|||||||||||||||||.|
BL00062___ytq    636 AAAAGCCGTCGCCGATTTGGACGTGCAGGGGATTAAAATCCATCTGCTCC    685

BSNT_04440___    686 ACCTACTGAAAGGCACGCCGATGGTCAAACAATATGAAAAGGGCAAGCTG    735
                     ||||..|.|||||.||.||.|||||.||.||.||||||||.||.||..| 
BL00062___ytq    686 ACCTGTTAAAAGGGACACCAATGGTGAAGCAGTATGAAAAAGGAAAATT-    734

BSNT_04440___    736 GAA--TTTCTTTCTCAAGATGATTATGTGCAGCTCGTCTGCGATCAGCTT    783
                      ||  ||.||||||||||||||.|||||.|||||.||.||||||||||||
BL00062___ytq    735 -AACGTTCCTTTCTCAAGATGAATATGTCCAGCTTGTTTGCGATCAGCTT    783

BSNT_04440___    784 GAGATCATTCCGCCTGAAATGATCGTCCACCGCATTACAGGTGACGGACC    833
                     ||.||..|||||||.|||||||||.|.|||||.|||||.|||||||||||
BL00062___ytq    784 GAAATTCTTCCGCCGGAAATGATCATTCACCGGATTACGGGTGACGGACC    833

BSNT_04440___    834 GATTGAGTTGATGATCGGGCCAATGTGGAGCGTCAACAAATGGGAAGTGC    883
                     |||.||.||||||.||||.||.||||||||||||||.||||||||||| |
BL00062___ytq    834 GATCGAATTGATGGTCGGACCGATGTGGAGCGTCAATAAATGGGAAGT-C    882

BSNT_04440___    884 TT-GGCGCCATTAATAAAGAGCTAGAAAATCGAGGCAGCTATCA-AGGAA    931
                     || ..||||||.||....||..|.||||..||.||||||.|||| .||||
BL00062___ytq    883 TTAAACGCCATCAACGGGGAATTGGAAAGGCGCGGCAGCCATCAGGGGAA    932

BSNT_04440___    932 AGTTCTTTCAAC--GGCTTGAGGAGGAATCAGCGCTATGA    969
                     |  |..||||||  |||...||.|||.|| .||...||||
BL00062___ytq    933 A--TGGTTCAACAAGGCGAAAGAAGGCAT-GGCCACATGA    969


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