Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00001 and BL00076

See Amino acid alignment / Visit BSNT_00001 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:21:39
# Commandline: needle
#    -asequence dna-align/BSNT_00001___dnaA.1.5803.seq
#    -bsequence dna-align/BL00076___dnaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00001___dnaA-BL00076___dnaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00001___dnaA-BL00076___dnaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00001___dnaA
# 2: BL00076___dnaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1346
# Identity:    1099/1346 (81.6%)
# Similarity:  1099/1346 (81.6%)
# Gaps:          10/1346 ( 0.7%)
# Score: 4456.5
# 
#
#=======================================

BSNT_00001___      1 ATGGAAAATATATTAGACCTGTGGAACCAAGCCCTTGCTCAAATCGAAAA     50
                     |||.||||.||||..||.||.|||||.|||||..|.|..||.||||||||
BL00076___dna      1 ATGAAAAACATATCGGATCTTTGGAATCAAGCTTTGGGGCAGATCGAAAA     50

BSNT_00001___     51 AAAGTTGAGCAAACCGAGTTTTGAGACTTGGATGAAGTCAACCAAAGCCC    100
                     |||.||||||||.||.||.|||||.||.||||||||.||.||.||.||||
BL00076___dna     51 AAAATTGAGCAAGCCCAGCTTTGAAACATGGATGAAATCGACAAAGGCCC    100

BSNT_00001___    101 ACTCACTGCAAGGCGATACATTAACGATCACGGCTCCCAATGAATTTGCC    150
                     |.|||.||||.||||||||..|.|..|||||.||.||.||.||.||.|||
BL00076___dna    101 ATTCATTGCAGGGCGATACGCTGATCATCACCGCACCGAACGAGTTCGCC    150

BSNT_00001___    151 AGAGACTGGCTGGAGTCCAGATACTTGCATCTGATTGCAGATACTATATA    200
                     |||||||||||.||.||.||||||.||||.|||||.||.|||||.||.||
BL00076___dna    151 AGAGACTGGCTTGAATCAAGATACCTGCACCTGATCGCCGATACGATCTA    200

BSNT_00001___    201 TGAATTAACCGGGGAAGAATTGAGCATTAAGTTTGTCATTCCTCAAAATC    250
                     |||..|.||.||.|||||||||||||||||.||||||||||||||.||||
BL00076___dna    201 TGATCTGACAGGAGAAGAATTGAGCATTAAATTTGTCATTCCTCAGAATC    250

BSNT_00001___    251 AAGATGTTGAGGACTTTATGCCGAAACCGCAAGTCAAAAAAGCGGTC-AA    299
                     ||.|||..||.||.||||||||.||..|.|.|.|||||||| ..||| ||
BL00076___dna    251 AAAATGAAGAAGATTTTATGCCAAAGTCTCCAATCAAAAAA-ATGTCGAA    299

BSNT_00001___    300 AGAAGATACATCTGATTTTCCTCAAAATATGCTCAATCCAAAATATACTT    349
                     ||||||..|..||||||||||.|||||.|||||.|||||.||||||||.|
BL00076___dna    300 AGAAGAACCGGCTGATTTTCCGCAAAACATGCTGAATCCCAAATATACAT    349

BSNT_00001___    350 TTGATACTTTTGTCATCGGATCTGGAAACCGATTTGCACACGCTGCTTCC    399
                     |||||||.||.||.|||||.||.|||||||||||.||.|||||.||.||.
BL00076___dna    350 TTGATACGTTCGTTATCGGTTCAGGAAACCGATTCGCCCACGCAGCGTCT    399

BSNT_00001___    400 CTCGCAGTAGCGGAAGCACCCGCGAAAGCTTACAACCCTTTATTTATCTA    449
                     .|.|||||.||.|||||.||.||||||||||||||.||..|.|||||.||
BL00076___dna    400 TTGGCAGTGGCTGAAGCCCCGGCGAAAGCTTACAATCCGCTGTTTATTTA    449

BSNT_00001___    450 TGGGGGCGTCGG-CTTAGGGAAA-ACGCACTTAATGCATGCGATCGGCCA    497
                     .|||||.||||| |||  ||||| ||.||||||||||||||||||||.||
BL00076___dna    450 CGGGGGAGTCGGACTT--GGAAAGACTCACTTAATGCATGCGATCGGGCA    497

BSNT_00001___    498 TTATGTAATAGATCATAATCCTTCTGCCAAAGTGGTTTATCTGTCTTCTG    547
                     .|||||.||.|||||.|||||.|||||.||||||||||||.||||.||||
BL00076___dna    498 CTATGTCATCGATCACAATCCATCTGCAAAAGTGGTTTATTTGTCATCTG    547

BSNT_00001___    548 AGAAATTTACAAACGAATTCATCAACTCTATCCGAGATAATAAAGCCGTC    597
                     |||||||||||||.||.|||||.|||||.|||||.||.||||||||.|||
BL00076___dna    548 AGAAATTTACAAATGAGTTCATTAACTCGATCCGTGACAATAAAGCTGTC    597

BSNT_00001___    598 GACTTCCGCAATCGCTATCGAAATGTTGATGTGCTTTTGATAGATGATAT    647
                     ||.||.|||||||||||||||||||||||.||.|||||.|||||.|||||
BL00076___dna    598 GATTTTCGCAATCGCTATCGAAATGTTGACGTTCTTTTAATAGACGATAT    647

BSNT_00001___    648 TCAATTTTTAGCGGGGAAAGAACAAACCCAGGAAGAATTTTTCCATACAT    697
                     ||||||||||||.||.||||||||.||.||.||.||||||||||||||.|
BL00076___dna    648 TCAATTTTTAGCCGGAAAAGAACAGACGCAAGAGGAATTTTTCCATACGT    697

BSNT_00001___    698 TTAACACATTGCACGAAGAAAGCAAA-CAAATCGTCATTTCAAGTGACCG    746
                     ||||.||..||||.||||||| |||| ||.||.||||||||.||.|||||
BL00076___dna    698 TTAATACGCTGCATGAAGAAA-CAAAGCAGATTGTCATTTCCAGCGACCG    746

BSNT_00001___    747 ACCGCCAAAGGAAATTCCGACACTTGAGGACAGATTGCGCTCTCGTTTTG    796
                     .||.|||||.||.||.||.||.|||||.|||.|.||||||||.|||||||
BL00076___dna    747 GCCTCCAAAAGAGATCCCAACGCTTGAAGACCGTTTGCGCTCCCGTTTTG    796

BSNT_00001___    797 AATGGGGACTTATTACAGATATCACACCGCCTGATCTAGAAACGAGAATT    846
                     ||||||||.|.||.||.||.|||||.||.||||||||.|||||.||||||
BL00076___dna    797 AATGGGGATTGATCACTGACATCACGCCTCCTGATCTGGAAACAAGAATT    846

BSNT_00001___    847 GCAATTTTAAGAAAAAAAGCCAAAGCAGAAGGCCTCGATATTCCGAACGA    896
                     ||.|||||||||||.|||||.|||||||||||.||.|||||.|||||.||
BL00076___dna    847 GCGATTTTAAGAAAGAAAGCAAAAGCAGAAGGACTTGATATCCCGAATGA    896

BSNT_00001___    897 GGTTATGCTTTACATCGCGAATCAAATCGACAGCAATATTCGGGAACTCG    946
                     .||.||||||||.||.||.|||||.||||||||||||||..||||.||.|
BL00076___dna    897 AGTCATGCTTTATATTGCCAATCAGATCGACAGCAATATCAGGGAGCTGG    946

BSNT_00001___    947 AAGGAGCATTAATCAGAGTTGTCGCTTATTCATCTTTAATTAATAAAGAT    996
                     ||||.|||||||||||.||||||||.|||||.||.||.||.||||||||.
BL00076___dna    947 AAGGGGCATTAATCAGGGTTGTCGCATATTCTTCCTTGATCAATAAAGAC    996

BSNT_00001___    997 ATTAATGCTGATCTGGCCGCTGAGGCGTTGAAAGATATTATTCCTTCCTC   1046
                     |||||.||.||||||||.|||||.||.|||||||||||.||||||||.||
BL00076___dna    997 ATTAACGCCGATCTGGCTGCTGAAGCTTTGAAAGATATCATTCCTTCTTC   1046

BSNT_00001___   1047 AAAACCGAAAGTCATTACGATAAAAGAAATTCAGAGGGTAGTAGGCCAGC   1096
                     |||.|||||||||||||||||.|||||.||.||.||..|.||.|||||||
BL00076___dna   1047 AAAGCCGAAAGTCATTACGATCAAAGACATCCAAAGAATCGTCGGCCAGC   1096

BSNT_00001___   1097 AATTTAATATTAAACTCGAGGATTTCAAAGCAAAAAAACGGACAAAGTCA   1146
                     |.||||||||.||.||.|||||||||||.||.||.|||||||||||.||.
BL00076___dna   1097 AGTTTAATATCAAGCTGGAGGATTTCAAGGCGAAGAAACGGACAAAATCG   1146

BSNT_00001___   1147 GTAGCTTTTCCGCGTCAAATCGCCATGTACTTATCAAGGGAAATGACTGA   1196
                     ||.|||||||||||.||.|||||.|||||..|||||||.||||||||.||
BL00076___dna   1147 GTGGCTTTTCCGCGGCAGATCGCTATGTATCTATCAAGAGAAATGACAGA   1196

BSNT_00001___   1197 TTCCTCTCTTCCTAAAATCGGTGAAGAGTTTGGAGGACGTGATCATACGA   1246
                     |||.||||||||.||.|||||.|||||.|||||.|||||.||.||.||||
BL00076___dna   1197 TTCTTCTCTTCCGAAGATCGGCGAAGAATTTGGCGGACGCGACCACACGA   1246

BSNT_00001___   1247 CCGTTATTCATGCGCATGAAAAAATTTCGAAACTGCTG-GCAGATGATGA   1295
                     |.||.||.|||||.|||||.|||||.||.||||||||| || ||||||||
BL00076___dna   1247 CGGTCATCCATGCCCATGAGAAAATATCAAAACTGCTGAGC-GATGATGA   1295

BSNT_00001___   1296 ACAGCTTCAGCAGCATGTAAAAGAAATTAAAGAACAGCTTAAATAG   1341
                     |||||||||||||||..|.||||||||||||||.|||||.|.|||.
BL00076___dna   1296 ACAGCTTCAGCAGCAGATTAAAGAAATTAAAGAGCAGCTGAGATAA   1341


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