Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01290 and BL00088

See Amino acid alignment / Visit BSNT_01290 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:48
# Commandline: needle
#    -asequence dna-align/BSNT_01290___nagP.1.5803.seq
#    -bsequence dna-align/BL00088___nagP.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01290___nagP-BL00088___nagP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01290___nagP-BL00088___nagP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01290___nagP
# 2: BL00088___nagP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1499
# Identity:     924/1499 (61.6%)
# Similarity:   924/1499 (61.6%)
# Gaps:         265/1499 (17.7%)
# Score: 2658.5
# 
#
#=======================================

BSNT_01290___      1 ATGCTTTCATTTTTACAAAAACTCGG----GAAGTCATTTATGCTCCCGA     46
                     |||.|...||||.|.|||||..||||    |    |..|.|||||.||||
BL00088___nag      1 ATGTTGGGATTTCTTCAAAATATCGGCCGCG----CGCTCATGCTGCCGA     46

BSNT_01290___     47 TTGCGGTTCTGCCTGCGGTTGGAATTATCCTTGCGCTTGGCAGAGAGGAT     96
                     ||||.|||||.|||||.|..||..|..|.||.||.||.||..|.||.||.
BL00088___nag     47 TTGCCGTTCTTCCTGCTGCGGGCCTCCTGCTCGCACTGGGACGGGAAGAC     96

BSNT_01290___     97 GTATTTAATATCCCGTTTGTCTATCAGGCGG-----GGAC-GGCGGTTTT    140
                     .|.||.||.||.||||||.||      ||.|     |||| ..|..||.|
BL00088___nag     97 CTGTTAAACATTCCGTTTATC------GCTGCTTCAGGACAATCAATTCT    140

BSNT_01290___    141 TGATCATCTGCCGCTTATTTTTGCGATCGGAATTGCCATCGGCATT-TCA    189
                     |||.||.||.|||.||||.||||||||.||..||||.||||| ||| |||
BL00088___nag    141 TGACCAACTTCCGATTATCTTTGCGATAGGCGTTGCGATCGG-ATTGTCA    189

BSNT_01290___    190 AAAGACAGCAATGGGGCCGCGGGTTTATCAGGGGCGATATCG--TATCTG    237
                     ||.||..||.|.||||||||.|.|.|.||.||.||  .||||  |||.| 
BL00088___nag    190 AAGGATGGCCACGGGGCCGCCGCTCTGTCCGGAGC--CATCGGTTATTT-    236

BSNT_01290___    238 ATG-CTTGAC--GCGGCT------------ACAAAGACAATTGATAAAAC    272
                      || |.||||  ||||||            |.||.|||  .||       
BL00088___nag    237 -TGTCCTGACAGGCGGCTTAGCAGCCATCAATAAGGAC--CTG-------    276

BSNT_01290___    273 AAATAACATGGCGGTGTTTGGGGGAATTATTGCCGGTTTAATTGCCG--G    320
                         |||||||..||..|.||.||.||||||||.||..|..|.||||  |
BL00088___nag    277 ----AACATGGGAGTTCTCGGCGGGATTATTGCAGGCGTTGTCGCCGCCG    322

BSNT_01290___    321 TTACACCTATAACCGCTTCAAGGATACCAAGCTGCCTGAATATCTCGGAT    370
                     |  ||..|||||||||||.||.|||.|.|||||||||||.|..|||||.|
BL00088___nag    323 T--CATGTATAACCGCTTTAAAGATGCAAAGCTGCCTGACTGGCTCGGTT    370

BSNT_01290___    371 TTTTCAGTGGCAGACGGCTTGTGCCGATTATAACAGCCATTAT-TACGAT    419
                     |.|||.|.||.|.|||...|||.||||||||.|||||| ||.| |.|.||
BL00088___nag    371 TCTTCGGCGGAAAACGCAGTGTTCCGATTATGACAGCC-TTCTGTTCCAT    419

BSNT_01290___    420 CATTTTAGCGGGCATATTCGGAGTCGTCTGGCCGCCGATT----------    459
                     ||||.|.||.|||||.|||||..|||||||      ||||          
BL00088___nag    420 CATTCTTGCAGGCATTTTCGGCTTCGTCTG------GATTTATGCACAGC    463

BSNT_01290___    460 ---CAATCTTGTATCAACTCGTTTGGAGAGTGGATGCT-----CGGGCTC    501
                        |||  |||     ||.|..||||||..|||||..|     ||||   
BL00088___nag    464 AGGCAA--TTG-----ACGCCATTGGAGGATGGATCATTCATGCGGG---    503

BSNT_01290___    502 GGCGGCA-TCGGGGCAGGCATATTCGGCCTTTTCAACAGGCTGTTAATTC    550
                        |||| |.||||..||.||||||||.|||||.|||||||||.|..|.|
BL00088___nag    504 ---GGCATTAGGGGTCGGGATATTCGGTCTTTTAAACAGGCTGCTTTTGC    550

BSNT_01290___    551 CGCTTGGCCTTCACCATGTACTGAACAATATTTTCTGGTTCCAATTTGGA    600
                     ||||.||||||||.||..|..|.|||||.||..|||||.|....||||||
BL00088___nag    551 CGCTCGGCCTTCATCACATCTTAAACAACATGGTCTGGATGGTCTTTGGA    600

BSNT_01290___    601 GAAT--------ATAACGGAGTGACAGGGGATCTGGCGCGCTTTTTCGCG    642
                     ||||        |.||||| ||||||       ||...||.||.||.||.
BL00088___nag    601 GAATTTGCAGGCAAAACGG-GTGACA-------TGAACCGGTTCTTTGCC    642

BSNT_01290___    643 AAAGATCCGACAGCGGGCACATATATGACGGGATTCTTCCCAATCATGAT    692
                     ..||||||.|..||.|||.|.|.||||||.||.||||||||.||||||||
BL00088___nag    643 GGAGATCCAAGCGCCGGCGCCTTTATGACAGGGTTCTTCCCGATCATGAT    692

BSNT_01290___    693 GTTCGGTCTTCCGGCGGCGTGTCTGGCTATGGTTGTGACTGCGAAGCCGT    742
                     ||||||||||||.||||||||||||||.|||.|||...|||||||     
BL00088___nag    693 GTTCGGTCTTCCTGCGGCGTGTCTGGCGATGATTGCCGCTGCGAA-----    737

BSNT_01290___    743 CTAAA-------CGGAAAGCGACGGCTGGGATGATGATTGGGTTTGCTTT    785
                       |||       ||.|||||.|||||.|||.||.||||.||.||.||.||
BL00088___nag    738 --AAAGCATCGCCGCAAAGCAACGGCCGGGTTGCTGATCGGATTGGCGTT    785

BSNT_01290___    786 AACGGCGTTTATCACAGGGATTACGGAGCCGATTGAGTTTGCATTTATGT    835
                     .||..|.|||.|.||.||.||.||.||||||||||||||..||||.||||
BL00088___nag    786 CACATCATTTTTAACCGGAATCACAGAGCCGATTGAGTTCACATTCATGT    835

BSNT_01290___    836 TTTTATCTCCGCTTTTATACGCTGTTCACGCGGTCTTAACCG--------    877
                     |..|.||.||||||.|.|.||.|.||||.||..|.|||||||        
BL00088___nag    836 TCCTGTCGCCGCTTCTCTTCGGTATTCATGCCTTGTTAACCGCAAGCGCC    885

BSNT_01290___    878 -----GGTTATCTTTATTTATCGTCAACTGGCTCGGCATCCGCTCA-GGC    921
                          .||.|.|..|||             ||||||||||| .||| |||
BL00088___nag    886 ATGACCGTGACCAATAT-------------GCTCGGCATCC-ATCACGGC    921

BSNT_01290___    922 TTCTCTTTTTCAGCCGGAGCTATCGATTATGTGCTCAGCTATGGAATCGC    971
                     ||..|.|||||||||||..|.|||||.|||.|..|.|.||.|||||||||
BL00088___nag    922 TTTACCTTTTCAGCCGGGACGATCGACTATCTCTTAAACTTTGGAATCGC    971

BSNT_01290___    972 GGAAAAACCGCTGCTTCTGCTTTTGGTAGGTATATGCTATGCAGCGGTA-   1020
                     ...|||.||||||||..|||||..|.|.|||.| || |.|.|.||..|| 
BL00088___nag    972 CACAAAGCCGCTGCTCTTGCTTCCGCTTGGTCT-TG-TTTACGGCATTAT   1019

BSNT_01290___   1021 -TACTTTATCGTGTTTTATGTACTGATTA--AGGCTTTGAATTTAAAAAC   1067
                      ||.||.|||.|.||||||.|..||||.|  |.||  |.|||||.|||||
BL00088___nag   1020 TTATTTCATCATCTTTTATTTCTTGATAACGAAGC--TCAATTTGAAAAC   1067

BSNT_01290___   1068 GCCTGGACGGGAAGACGATGATGTGGATGAAGTGCTGGATGAAAATACTG   1117
                     |||||||||.|||||.||.||||            .|.|.|||||.||.|
BL00088___nag   1068 GCCTGGACGAGAAGATGACGATG------------AGCAGGAAAACACCG   1105

BSNT_01290___   1118 TT-------------CAGGA---TGTAAAT--GAAAACATCATGCTGA--   1147
                     .|             |||||   |.|||||  ||||.|  |.|||.||  
BL00088___nag   1106 CTGTCAGCCCTGACACAGGATCGTCTAAATACGAAACC--CTTGCGGACA   1153

BSNT_01290___   1148 ---------AAGGGCTCGGCGGAAAAGAAAACCTTCAAAC-CATTGATC-   1186
                              |||.|||.|||||||||||||||.|..|.|| |  |||.| 
BL00088___nag   1154 AATACATCGAAGCGCTTGGCGGAAAAGAAAACATCGAGACGC--TGAACA   1201

BSNT_01290___   1187 ATTGCGCCACAAGGCTGCGACTGACTGTGAAGGATACCGCTT---TGGTG   1233
                     |.||||..||..|.||.||.||.|..||....|||   ||||   .|.||
BL00088___nag   1202 ACTGCGTGACCCGCCTCCGCCTCAAGGTCCGCGAT---GCTTCCAAGCTG   1248

BSNT_01290___   1234 GATG-AAGCGCTGCTAAAGAAAGC---AGGCGCAAAAGGGGTT-GTCAAA   1278
                     |||| ||||||    .|.||||.|   .||.|| .|||||.|| ||||| 
BL00088___nag   1249 GATGAAAGCGC----GATGAAATCCATGGGAGC-GAAGGGATTCGTCAA-   1292

BSNT_01290___   1279 TCGGGCGGGCAATC-------GGTTCAAGTCATTATTGGCCCGAATGTGG   1321
                           |..|||||       |||.||.||.||.||.||..|..|.||.|
BL00088___nag   1293 ------GCTCAATCAGCACGAGGTGCAGGTGATCATCGGTACAGACGTCG   1336

BSNT_01290___   1322 AAT--TTGCAGCTGAGGAATTGAG---------GGCTGCTGTCAAATAA   1359
                     |||  |||  ||..|.|||.||||         ||         |||||
BL00088___nag   1337 AATTCTTG--GCGAATGAAATGAGAAAACGTACGG---------AATAA   1374


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