Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06278 and BL00091

See Amino acid alignment / Visit BSNT_06278 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_06278___yyaC.1.5803.seq
#    -bsequence dna-align/BL00091___yyaC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06278___yyaC-BL00091___yyaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06278___yyaC-BL00091___yyaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06278___yyaC
# 2: BL00091___yyaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 659
# Identity:     446/659 (67.7%)
# Similarity:   446/659 (67.7%)
# Gaps:          82/659 (12.4%)
# Score: 1399.0
# 
#
#=======================================

BSNT_06278___      1 ATGAATCGAAAAGGCGGGCTTTTTTCCTCTCAGGAACGAGTAAAGCAATA     50
                     |||||||||||||||||..|||||   |||||.||||.|.|.||..||||
BL00091___yya      1 ATGAATCGAAAAGGCGGAATTTTT---TCTCAAGAACCAATGAATGAATA     47

BSNT_06278___     51 TGTTTCACATACAGAT--GCTGCAGCGGCAAAACAAATCCAAACCATCCT     98
                     |.||||.|||||.|||  |||  |||.|..||||||||..|.|...||||
BL00091___yya     48 TATTTCTCATACGGATCCGCT--AGCTGTTAAACAAATAGAGAAAGTCCT     95

BSNT_06278___     99 TTCTTCATCCTTACGTAAAG-----CTG---CCGGCAAACCAATTGTCGT    140
                     |||  |.||  ||..|||||     |.|   |||||   |||    ||||
BL00091___yya     96 TTC--CGTC--TATTTAAAGGAAGCCGGAGACCGGC---CCA----TCGT    134

BSNT_06278___    141 G---GTTTGTATCGGAACAGACCGTTCAACCGGTGACTCATTAGGCCCGC    187
                     |   |||||.|||||.||||||||.||.|||||.||.||..|.||.||.|
BL00091___yya    135 GATCGTTTGCATCGGTACAGACCGCTCGACCGGAGATTCGCTCGGTCCCC    184

BSNT_06278___    188 TCGTAGGGATGAAACT-----CAAACAGATGCAGCTCACCAGATTCCATG    232
                     |||||||.||||||||     ||||     ||||||.||..|.||.||||
BL00091___yya    185 TCGTAGGAATGAAACTCTCCGCAAA-----GCAGCTGACACGTTTTCATG    229

BSNT_06278___    233 TCTACGGAAC-CTTATCTGACCCCGTCCATGCTGTGAACATGAAGGATAA    281
                     ||||.||||| ||| .|.|||||.||.||.||.||||||.|.||.||.||
BL00091___yya    230 TCTATGGAACGCTT-GCCGACCCGGTTCACGCCGTGAACTTAAATGAAAA    278

BSNT_06278___    282 AATCAATGACATTCATAAATTACATAAAAACCCATTTGTTATAGCGGTGG    331
                     ..|..||.|.||||||.|....|||.||||.||.|||.|.||.|||.|.|
BL00091___yya    279 GCTTGATCATATTCATCAGCAGCATCAAAATCCTTTTATGATCGCGATCG    328

BSNT_06278___    332 ATGCATG-CTTAGGCCGCGTTAAGAGTGTGGGTTCATTTCAAATCGGGGA    380
                     |.||.|| ||| ||.||....||.||.|||||.||.||.||||||||..|
BL00091___yya    329 ACGCCTGTCTT-GGACGAACCAAAAGCGTGGGGTCTTTCCAAATCGGCAA    377

BSNT_06278___    381 CGGGCCATTAAAGCCCGGAGCCGGTGTGCA-AAAAGACCTT--CCTGAAG    427
                     .|||||.||.|||||.|||||.||.||.|| |||||   ||  ||.||||
BL00091___yya    378 AGGGCCTTTGAAGCCGGGAGCAGGCGTTCAGAAAAG---TTTGCCGGAAG    424

BSNT_06278___    428 TGGGAGATCTTCATATTAACGGAATCGTAAATGTCAGCGGTTTTATGGAA    477
                     |.||..|..|.||||||||||||||.||.||||||||||||||||||||.
BL00091___yya    425 TCGGCCACGTGCATATTAACGGAATTGTCAATGTCAGCGGTTTTATGGAG    474

BSNT_06278___    478 TATTTTGTATTACAAAATACTAGACTCAA-CTTGGTCATGAATATGGCAA    526
                     ||||||||..|.||||||||.||.||||| ||| |||||||..|||||||
BL00091___yya    475 TATTTTGTCCTGCAAAATACAAGGCTCAATCTT-GTCATGAGCATGGCAA    523

BSNT_06278___    527 ATGTTCTAGCGGAAGG---------TTTGAGTTTAACAGATCGGA-CAGA    566
                     ||||.||.|||||.||         |.||    .||.|||.|||| |..|
BL00091___yya    524 ATGTGCTTGCGGACGGGCTGTCGCATCTG----GAAAAGACCGGATCGCA    569

BSNT_06278___    567 GTGGAGGCAAGAACGCC----TTAACCCGCTGCAAAGGCTCACTGGGCGC    612
                     |.||         ||||    .|.|||...|| ||||..|.||.||..|.
BL00091___yya    570 GCGG---------CGCCATGTGTCACCAATTG-AAAGAATGACCGGAAGA    609

BSNT_06278___    613 AT---ATAA    618
                     ||   ||||
BL00091___yya    610 ATGTCATAA    618


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