Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06287 and BL00109

See Amino acid alignment / Visit BSNT_06287 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:14
# Commandline: needle
#    -asequence dna-align/BSNT_06287___gidA.1.5803.seq
#    -bsequence dna-align/BL00109___gidA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06287___gidA-BL00109___gidA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06287___gidA-BL00109___gidA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06287___gidA
# 2: BL00109___gidA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1900
# Identity:    1499/1900 (78.9%)
# Similarity:  1499/1900 (78.9%)
# Gaps:          26/1900 ( 1.4%)
# Score: 5915.5
# 
#
#=======================================

BSNT_06287___      1 ATGGGGTATGAAGCAGGCCAATACGATGTGATTGTGATTGGCGCCGGGCA     50
                     |||||.|||||||||||||||||.||.||..||||..|.||||||||.||
BL00109___gid      1 ATGGGCTATGAAGCAGGCCAATATGACGTCGTTGTCGTCGGCGCCGGACA     50

BSNT_06287___     51 TGCCGGTGTTGAGGCTGCCCTCGCATCTGCACGCCAAGGCGCCAAAACGC    100
                     .|||||||||||.||.||.||.||.||.||..|.||||||||.|||||||
BL00109___gid     51 CGCCGGTGTTGAAGCGGCGCTGGCGTCAGCCAGACAAGGCGCAAAAACGC    100

BSNT_06287___    101 TTGTCTTGACCATCAACCTAGATATGGTTGCATTTATGCCATGTAATCCG    150
                     |||||||.||.||.|||||.|||||||||||.||.|||||||||||.|||
BL00109___gid    101 TTGTCTTAACGATTAACCTTGATATGGTTGCTTTCATGCCATGTAACCCG    150

BSNT_06287___    151 TCTGTCGGCGGCCCCGCAAAAGGGATTGTCGTCCGCGAAATTGACGCGCT    200
                     |||||||||||.||.||||||||.||.|||||||||||||||||||||||
BL00109___gid    151 TCTGTCGGCGGACCTGCAAAAGGAATCGTCGTCCGCGAAATTGACGCGCT    200

BSNT_06287___    201 CGGCGGAGAAATGGGAAGAAACATCGATAAAACGCATATTCAAATGAGAA    250
                     ||||||.|||||||..|.|||.||.||||||||||||||.||||||||..
BL00109___gid    201 CGGCGGGGAAATGGCTAAAAATATTGATAAAACGCATATCCAAATGAGGC    250

BSNT_06287___    251 TGCTGAATACAGGAAAAGGTCCTGCGGTTCGTGCATTGCGTGCGCAAGCA    300
                     |..|.||||||||||||||.|||||.|||||.||..|.||.||.||.||.
BL00109___gid    251 TTTTAAATACAGGAAAAGGACCTGCCGTTCGGGCGCTTCGGGCTCAGGCT    300

BSNT_06287___    301 GACAAATTCCAATATCAGCACGAAATGAAAAATACGCTTGAAAAAGAACC    350
                     ||.|||||||||||||||||.|||||||||||.||.|||||.||.|||||
BL00109___gid    301 GATAAATTCCAATATCAGCATGAAATGAAAAAGACACTTGAGAATGAACC    350

BSNT_06287___    351 AAACTTAACATTGCTGCAAGGAATTGTGGAGCGGCTGATCGTTGAAGACG    400
                     .||.||.||..|||||||||||||.||.||.||.||..|..|||||||||
BL00109___gid    351 GAATTTGACCATGCTGCAAGGAATGGTCGAACGCCTTCTTATTGAAGACG    400

BSNT_06287___    401 GCGAATGCCGAGGCGTTATTACACAAACCGGCGCACATTATCGTGCGAAA    450
                     |.||||||||.||||||||.||.||.||.||.||..|.||.|||.|.||.
BL00109___gid    401 GGGAATGCCGGGGCGTTATAACCCAGACAGGGGCGGAGTACCGTTCTAAG    450

BSNT_06287___    451 GCAGTTGTCATGACGACAGGGACATATTTAAGAGGACGTATCATTCTTGG    500
                     .|.|||||..|||||||.|||||||.|||.|||||....|||||||||||
BL00109___gid    451 ACCGTTGTTCTGACGACGGGGACATTTTTGAGAGGGAAAATCATTCTTGG    500

BSNT_06287___    501 TGATCTGTCTTACTCAAGCGGCCCAAATAACCAGCAGCCTTCTATTAAGC    550
                     .||||||||.|||||.|||||.||.||.|||||||||||.||.||.||||
BL00109___gid    501 CGATCTGTCATACTCCAGCGGACCGAACAACCAGCAGCCGTCCATCAAGC    550

BSNT_06287___    551 TTTCTGAGCATTTGGAGGAACTTGGTTTTGACCTTGTTCGTTTTAAAACA    600
                     |.|||||.|||.|.||.||.||.||.||||||||.||.||||||||||||
BL00109___gid    551 TGTCTGAACATCTTGAAGAGCTCGGCTTTGACCTCGTCCGTTTTAAAACA    600

BSNT_06287___    601 GGTACGCCGCCTCGCGTTAAAAGCGACACGATTGATTACAGCAAAACGGA    650
                     ||.||||||||.||.||.||.||..|..|.|||||.||||||||||||||
BL00109___gid    601 GGGACGCCGCCGCGGGTCAACAGTCATTCAATTGACTACAGCAAAACGGA    650

BSNT_06287___    651 AATTCAGCCTGGTGACGATGTGCCTCGCGCTTTCTCATATGAAACAGTGG    700
                     |||.|||||.|||||.||.|||||.||.||.||.||.|||||.||.||||
BL00109___gid    651 AATCCAGCCCGGTGATGAAGTGCCGCGGGCCTTTTCGTATGAGACGGTGG    700

BSNT_06287___    701 AATATATCACAGATCAGCTCCCTTGCTGGCTGACATATACAAGCCCTGAG    750
                     |||||||.|||||.|||||.||.||||||||.|||||||||||.||.||.
BL00109___gid    701 AATATATTACAGACCAGCTTCCATGCTGGCTCACATATACAAGTCCGGAA    750

BSNT_06287___    751 ACACATGAGATTATTGACAGCAACCTGCACCGTTCACCGATGTATTCCGG    800
                     ||.||.||.||.|||||||.|||..||||.||||||||||||||.|||||
BL00109___gid    751 ACGCACGAAATCATTGACAACAATTTGCATCGTTCACCGATGTACTCCGG    800

BSNT_06287___    801 TATGATCAAAGGTACGGGCCCAAGATACTGCCCATCCATTGAAGATAAAG    850
                     .|||||||||||.|||||.||.|||||.|||||.||.||||||||.||.|
BL00109___gid    801 CATGATCAAAGGAACGGGACCGAGATATTGCCCGTCTATTGAAGACAAGG    850

BSNT_06287___    851 TTGTACGATTTAATGATAAACCGCGTCACCAGATCTTCCTTGAGCCGGAA    900
                     |.||.||.|||||.||.||.|||.|.|||||.|||||.||||||||.|||
BL00109___gid    851 TCGTCCGCTTTAACGACAAGCCGAGACACCAAATCTTTCTTGAGCCTGAA    900

BSNT_06287___    901 GGCAGAAATACACAGGAAGTCTATGTCCAAGGTTTATCTACAAGTCTTCC    950
                     ||..|.||.||.|||||||||||||||||.||.||.||.|||||.|||||
BL00109___gid    901 GGGCGCAACACCCAGGAAGTCTATGTCCAGGGATTGTCGACAAGCCTTCC    950

BSNT_06287___    951 AGAAGACGTACAGCAAAGAATGCTTGCAACGATTCCTGGACTTGAAAACG   1000
                     ||||||.||.||||.||.|||||||.||||.|||||.||.|||||.||.|
BL00109___gid    951 AGAAGATGTGCAGCGAAAAATGCTTTCAACTATTCCCGGCCTTGAGAATG   1000

BSNT_06287___   1001 TGCAAATGATGAGAGCCGGCTATGCGATCGAGTATGATGCAATCGTACCG   1050
                     |||||||||||.|.||.||.||||||||.||.||||||||.|||||||||
BL00109___gid   1001 TGCAAATGATGCGGGCGGGGTATGCGATTGAATATGATGCGATCGTACCG   1050

BSNT_06287___   1051 ACACAGCTCTGGCCGACACTTGAAACAAAAAAAATCACAAACCTTTACAC   1100
                     ||||||||.|||||||||.|.|||||.||||||||..|....||.|.|||
BL00109___gid   1051 ACACAGCTGTGGCCGACATTGGAAACGAAAAAAATTCCGGGACTCTTCAC   1100

BSNT_06287___   1101 TGCAGGCCAAATTAACGGAACTTCCGGTTATGAAGAAGCTGCGGGACAAG   1150
                     .||.||.||.|||||||||||.||.||.|||||||||||.||.|||||.|
BL00109___gid   1101 AGCCGGACAGATTAACGGAACATCAGGCTATGAAGAAGCGGCCGGACAGG   1150

BSNT_06287___   1151 GGATTATGGCGGGAATCAATGCAGGACGAAAAGCGCTTGGAAAAGAAGAA   1200
                     |.||||||||.||.||||||||.||.||.|||||||||||.||||||||.
BL00109___gid   1151 GAATTATGGCCGGTATCAATGCGGGCCGGAAAGCGCTTGGCAAAGAAGAG   1200

BSNT_06287___   1201 GTGATTTTAAGCCGTTCTGACGCCTATATTGGTGTTCTGATTGATGACCT   1250
                     ||.|||.|.|||||.||.|||||.|||||.||.||..||||.||.|||||
BL00109___gid   1201 GTCATTCTCAGCCGCTCAGACGCTTATATCGGCGTATTGATCGACGACCT   1250

BSNT_06287___   1251 TGTGACAAAAGGTACCAATGAGCCATATCGTCTTTTGACATCACGTGCGG   1300
                     ||||||||||||.||.||.||.|||||.||.||..||||.||.|||||.|
BL00109___gid   1251 TGTGACAAAAGGAACAAACGAACCATACCGCCTGCTGACTTCGCGTGCAG   1300

BSNT_06287___   1301 AATACAGATTGCTGCTTCGCCATGACAATGCTGATTTGCGTCTGACAGAA   1350
                     |.|||||..||||.||.||.||.||||||||.||.|||||.|||||.||.
BL00109___gid   1301 AGTACAGGCTGCTCCTGCGTCACGACAATGCAGACTTGCGCCTGACCGAG   1350

BSNT_06287___   1351 ATCGGACACCGCATTGGATTGATTTCTGATGAGCGCTAT-----GCGGCT   1395
                     |||||..|.|..||.||.|||||||||||.||..|.|||     |     
BL00109___gid   1351 ATCGGCTATCAGATCGGCTTGATTTCTGAAGAAAGATATCAAAAG-----   1395

BSNT_06287___   1396 TTTGAGAAGAAAAAAGCGGCGATCGAGGCGGAGAAAAAACGTCTTCATTC   1445
                     |||.|..|||||||||||||.||.||.||.|||||||||||.||||||||
BL00109___gid   1396 TTTCAAGAGAAAAAAGCGGCCATTGAAGCAGAGAAAAAACGCCTTCATTC   1445

BSNT_06287___   1446 TGTAATTATCAAGCCGTCTCCGGAAAATCAAGAATATATCCGTTCTCTTG   1495
                     |||.||||||||.|||.|...|||||||||.||||||||||||||.||.|
BL00109___gid   1446 TGTTATTATCAAACCGACAAAGGAAAATCAGGAATATATCCGTTCACTGG   1495

BSNT_06287___   1496 GCGGAAGCGAATTGAAAGATGGAGTTCGCGGCACAGACTTGATGAAGCGT   1545
                     ||||.|||||..|.|||||.||..||||||..||.|||.||||||||||.
BL00109___gid   1496 GCGGCAGCGAGCTCAAAGACGGCATTCGCGCGACCGACCTGATGAAGCGG   1545

BSNT_06287___   1546 CCTGAAATGAACTATGAAACAGTCACAAAACTGGCGCCGCC------AGA   1589
                     |||||||||||.||||||||.|||||....||.||||||||      |.|
BL00109___gid   1546 CCTGAAATGAATTATGAAACCGTCACTGCTCTTGCGCCGCCTGAACAAAA   1595

BSNT_06287___   1590 AGT-GCCAGTTCCTCAAGACGTGGCAGAACAAGTAGAAATCCAAGTGAAA   1638
                     ||| |||.|       .|||||.||.|||||.||.|||||.|||.|.||.
BL00109___gid   1596 AGTCGCCGG-------CGACGTTGCCGAACAGGTGGAAATTCAAATTAAG   1638

BSNT_06287___   1639 TATGAAGGATATATTGAAAAATCTCTT-CAGCAAGTGGAAAAACTGAAGA   1687
                     ||||||||||||||||||||.|| ||| |||||.||.||||||||.||||
BL00109___gid   1639 TATGAAGGATATATTGAAAAGTC-CTTGCAGCAGGTCGAAAAACTAAAGA   1687

BSNT_06287___   1688 AGATGGAAAATAAAAAAATTCCAGATCGAATTGATTATGACGCAATTAAG   1737
                     |.||||||||||||||.|||||.||..||||.||.||||||||.||.||.
BL00109___gid   1688 AAATGGAAAATAAAAAGATTCCTGACAGAATCGACTATGACGCGATCAAA   1737

BSNT_06287___   1738 GGGATTGCGACCGAGGCGCGTCAAAAACTGAAAAATGTACGGCCTTTGTC   1787
                     ||.|||||.||.||.|||||.||||||.|||||.|.||..|.||..||||
BL00109___gid   1738 GGCATTGCAACGGAAGCGCGCCAAAAATTGAAAGAGGTCAGACCGCTGTC   1787

BSNT_06287___   1788 TGTTGCCCAAGCTTCCCGCATTTCCGGTGTAAACCCGGCGGACATTTCAA   1837
                     |||.||.||.||.||.||.||||||||.||.||.||.||.||.|||||.|
BL00109___gid   1788 TGTCGCACAGGCCTCACGGATTTCCGGCGTCAATCCTGCTGATATTTCCA   1837

BSNT_06287___   1838 TTCTATTGGTGTATTTAGAGCAGGGACGCATTGCGAAGATAGCCGAATAG   1887
                     |.||..|.||.|||||||||||||||||.|||||.|||.|.||.||||||
BL00109___gid   1838 TACTGCTCGTTTATTTAGAGCAGGGACGGATTGCCAAGGTTGCGGAATAG   1887


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