Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06291 and BL00112

See Amino acid alignment / Visit BSNT_06291 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:15
# Commandline: needle
#    -asequence dna-align/BSNT_06291___spoIIIJ.1.5803.seq
#    -bsequence dna-align/BL00112___spoIIIJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06291___spoIIIJ-BL00112___spoIIIJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06291___spoIIIJ-BL00112___spoIIIJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06291___spoIIIJ
# 2: BL00112___spoIIIJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 822
# Identity:     615/822 (74.8%)
# Similarity:   615/822 (74.8%)
# Gaps:          60/822 ( 7.3%)
# Score: 2335.0
# 
#
#=======================================

BSNT_06291___      1 ---TTGTTGAAAAGGAGAATAGGGTTGCTATTA------AGTATGGTTGG     41
                        ||||||||.|||.||||    ||  |||||      ||||||.|.||
BL00112___spo      1 ATGTTGTTGAAGAGGCGAAT----TT--TATTATTGTTCAGTATGATCGG     44

BSNT_06291___     42 CGTATTCATGCTTTTGGCTGGATGCTCGAGTGTGAAA-----GAGCCGAT     86
                     |||..||.|||||||.||||||||..||     ||||     .|||||||
BL00112___spo     45 CGTTATCGTGCTTTTAGCTGGATGTACG-----GAAATCAACCAGCCGAT     89

BSNT_06291___     87 TACTGCAGATAGTCCGCA---TTTCTGGGACAAGTACGTAGTATATCCAT    133
                     .||||||||.||  ||.|   ||| |||.|||.|||..|.|||||.||.|
BL00112___spo     90 CACTGCAGAAAG--CGAAGGGTTT-TGGAACACGTATATCGTATACCCGT    136

BSNT_06291___    134 TGTCTGAGCTCATTACGTATGTAGCGAAATTGACGGGAGATAACTACGGG    183
                     ||||..||||.||.|||||||||||.||.||.|||...||.||||.|||.
BL00112___spo    137 TGTCACAGCTGATCACGTATGTAGCAAATTTAACGAATGAAAACTTCGGA    186

BSNT_06291___    184 CTTTCAATTATTCTAGTTACCATTTTAATTCGTTTATTAATTTTACCGCT    233
                     ||..|.|||||..|.||.||.||.|||||..|..|.||||||||.|||||
BL00112___spo    187 CTAGCGATTATCATCGTCACGATCTTAATCAGACTTTTAATTTTGCCGCT    236

BSNT_06291___    234 GATGATTAAGCAGCTGAGAAGTTCGAAAGCGATGCAGGCTTTACAGCCGG    283
                     ||||||.||||||..||..|||||||||||||||||||||.|.|||||.|
BL00112___spo    237 GATGATCAAGCAGACGAAGAGTTCGAAAGCGATGCAGGCTCTCCAGCCTG    286

BSNT_06291___    284 AAATGCAAAAGCTTAAAGAAAAATACAGCTCAAAGGATCAAAAAACGCAG    333
                     ||||||||||.|||...|||||||||||.||.||.|||||||||||||||
BL00112___spo    287 AAATGCAAAAACTTCGTGAAAAATACAGTTCTAAAGATCAAAAAACGCAG    336

BSNT_06291___    334 CAAAAGCTTCAGCAGGAAACAATGGCTTTATTCCAAAAGCATGGTGTCAA    383
                     ||.||||||||.||||||||.||||||.|..|.||.|||||.||.||.||
BL00112___spo    337 CAGAAGCTTCAACAGGAAACGATGGCTCTCATGCAGAAGCACGGGGTTAA    386

BSNT_06291___    384 TCCATTGGCGGGATGTTTCCCGATTTTGATCCAGATGCCGATTTTAATTG    433
                     .||..|.||.||||||||||||||.||.||.||.||||||||||||||.|
BL00112___spo    387 CCCGCTTGCCGGATGTTTCCCGATCTTAATTCAAATGCCGATTTTAATCG    436

BSNT_06291___    434 GATTCTATCATGCGATCATGAGAACCCAGGCGATTTCAGAGCATAGCTTC    483
                     |||||||||||||.||.||||||||.|.||..||..||||.||.|||||.
BL00112___spo    437 GATTCTATCATGCCATTATGAGAACGCGGGAAATCGCAGAACACAGCTTT    486

BSNT_06291___    484 TTATGGTTTGACTTAGGAGAAAAAGATCCTTACTATATTCTTCCTATCGT    533
                     ||||||||||||.|.||.||....|||||.||.|..|||.|.||.||..|
BL00112___spo    487 TTATGGTTTGACCTTGGGGAGCGTGATCCGTATTTCATTTTGCCGATTCT    536

BSNT_06291___    534 TGCCGGTGTCGCT-ACATTTGTTCAGCAAAAACTGATGATGGCGGGCAAT    582
                     .|||||||| |.| |||||..||||||||||.||||||||||||||.|..
BL00112___spo    537 CGCCGGTGT-GTTCACATTCATTCAGCAAAAGCTGATGATGGCGGGAACA    585

BSNT_06291___    583 GCGCAGCAAAATCCGCAAATGGCGATGATGCTTTGGATTATGCCAATTAT    632
                     |||||||||||||||||.||||||||||||||||||.|.|||||.||.||
BL00112___spo    586 GCGCAGCAAAATCCGCAGATGGCGATGATGCTTTGGCTGATGCCGATCAT    635

BSNT_06291___    633 GATTATCGTATTTGCGATCAACTTCCCGGCGGCTCTTTCTCTTTATTGGG    682
                     |||..|.|||||||||||||..|||||||||||||||||.||.||.||||
BL00112___spo    636 GATCGTTGTATTTGCGATCAGTTTCCCGGCGGCTCTTTCCCTGTACTGGG    685

BSNT_06291___    683 TAGTCGGTAACTTGTTTATGATTGCGCAAACTTTCCTCATTAAAGGACCT    732
                     |||||||||||||.||.||||||||.|||||.|||.|.||.|||||.|||
BL00112___spo    686 TAGTCGGTAACTTATTCATGATTGCTCAAACCTTCTTTATCAAAGGGCCT    735

BSNT_06291___    733 GATATTAAAAAAAATCCTG----------------AGCCG-----CAAAA    761
                     |||.|      |||..|||                |||||     .||||
BL00112___spo    736 GATCT------AAAGGCTGAGAGACAGGAAGCGGCAGCCGGAGGAAAAAA    779

BSNT_06291___    762 AGCCGGAGGAAAGAAAAAGTGA    783
                     |.|||||||.||||||||||||
BL00112___spo    780 ATCCGGAGGTAAGAAAAAGTGA    801


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_06291 and BL00112

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
