Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06256 and BL00131

See Amino acid alignment / Visit BSNT_06256 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:13
# Commandline: needle
#    -asequence dna-align/BSNT_06256___yyaL.1.5803.seq
#    -bsequence dna-align/BL00131___yyaL.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06256___yyaL-BL00131___yyaL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06256___yyaL-BL00131___yyaL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06256___yyaL
# 2: BL00131___yyaL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1970
# Identity:    1400/1970 (71.1%)
# Similarity:  1400/1970 (71.1%)
# Gaps:         172/1970 ( 8.7%)
# Score: 4856.5
# 
#
#=======================================

BSNT_06256___      1 ATGGCCCACGAAAGCTTTGAAGATGAAGAAATCGCGCGTCTTCTCAATGA     50
                     |||||.||.||||||||.||||||||||||.|.|||...|||||.|||||
BL00131___yya      1 ATGGCTCATGAAAGCTTCGAAGATGAAGAAGTTGCGAAGCTTCTGAATGA     50

BSNT_06256___     51 ACGGTTTGTGGCGATTAAAGTCGACCGGGAAGAGCGGCCGGATGTGGATT    100
                     ....||.||..|.||||||||.|||||.||.||||||||.||||||||||
BL00131___yya     51 GAAATTCGTCTCCATTAAAGTGGACCGCGAGGAGCGGCCTGATGTGGATT    100

BSNT_06256___    101 CTGTTTATATGAGAATCTGCCAGCTGATGACCGGGCAGGGCGGCTGGCCG    150
                     |..|||||||||..|||||||||.|||||||.||||||||||||||||||
BL00131___yya    101 CGATTTATATGACGATCTGCCAGATGATGACGGGGCAGGGCGGCTGGCCG    150

BSNT_06256___    151 CTGAATGTGTTTATCACGCCTGATCAGAAGCCGTTTTACGCGGGTACATA    200
                     ||||||||||||.|.||.||||||||||||||||||||.|||||||||||
BL00131___yya    151 CTGAATGTGTTTTTAACCCCTGATCAGAAGCCGTTTTATGCGGGTACATA    200

BSNT_06256___    201 TTTTCCAAAGACGAGCAAATTCAATCGTCCCGGTTTTGTTGATGTGCTTG    250
                     ||||||.|||||||||...||.||.|||||.||.||||||||.|||.|..
BL00131___yya    201 TTTTCCGAAGACGAGCCGTTTTAACCGTCCGGGGTTTGTTGAGGTGGTGA    250

BSNT_06256___    251 AGCATCTGTCTGAGACGTTTGCGAACGACCGCGAGCATGTCGAGGATATT    300
                     ||||.||.||.||.||.||.|||||..||||.||||||||.||.||||||
BL00131___yya    251 AGCAGCTTTCCGATACCTTCGCGAAAAACCGGGAGCATGTTGAAGATATT    300

BSNT_06256___    301 GCGGAGAACGCCGCTAAACATTTGCAGACCAA-AAC---AGCCGCCAAAT    346
                     ||.||.||.||               |.|||| |||   ||      |||
BL00131___yya    301 GCCGAAAAAGC---------------GGCCAACAACCTGAG------AAT    329

BSNT_06256___    347 C-AGGCGAAGGCCTTAGCGA-GTCAGCGATTCAC----------------    378
                     | |.|||||     .||||| |.|.|||||||.|                
BL00131___yya    330 CAAAGCGAA-----AAGCGATGCCGGCGATTCGCTCGGCGAAGACATATT    374

BSNT_06256___    379 ----CGGACATTCCAGCAGCTTGCCAGCGGGTTTGATACGATCTACGGCG    424
                         |||||.|..||||||||...||.|.|.||||||.||...|||||||
BL00131___yya    375 GAGGCGGACGTATCAGCAGCTGATCAACAGCTTTGATGCGGCGTACGGCG    424

BSNT_06256___    425 GTTTCGGGCAG-GCACCGAAATTTCCGATGCCCCATATGCTGATGTATTT    473
                     ||||| ||||| ||.|||||||||||.||.|||||||||||||..|.|.|
BL00131___yya    425 GTTTC-GGCAGCGCGCCGAAATTTCCAATCCCCCATATGCTGACATTTCT    473

BSNT_06256___    474 GCTTCGTTATCATCACAATAC-GGGGC-AGGAGAACGCTTTATACAACGT    521
                     ||||||.||||||  |||||| |.||| ||||||||||..|.||||.|||
BL00131___yya    474 GCTTCGCTATCAT--CAATACAGCGGCGAGGAGAACGCGCTGTACAGCGT    521

BSNT_06256___    522 GACGAAAACGCTGGACAGCATGGCGAATGGCGGCATTTACGATCATATCG    571
                     ||.|||||||.||||||||||||||||.||||||||||||||.|||.|||
BL00131___yya    522 GATGAAAACGTTGGACAGCATGGCGAACGGCGGCATTTACGACCATGTCG    571

BSNT_06256___    572 GCTATGGGTTCGCCCGCTATTCGACCGATGACGAGTGGCTCGTTCCCCAT    621
                     ||||.|||||.||||||||||||||.||||||||.|||||.||||||||.
BL00131___yya    572 GCTACGGGTTTGCCCGCTATTCGACAGATGACGAATGGCTTGTTCCCCAC    621

BSNT_06256___    622 TTTGAAAAAATGCTGTACGACAATGCGCTGCTGCTGACCGCTTATACAGA    671
                     ||||||||||||||.|||||.|||||..|..||||||.|||.|||||.||
BL00131___yya    622 TTTGAAAAAATGCTTTACGATAATGCTTTATTGCTGATCGCATATACTGA    671

BSNT_06256___    672 AGCCTATCAGGTCACGCAAAACAGCCGCTATAAAGAGATTTGTGAGCAGA    721
                     |||||||||..|||||.|||||...||.||||||.||||||..|||||||
BL00131___yya    672 AGCCTATCAAATCACGAAAAACGAACGGTATAAACAGATTTCCGAGCAGA    721

BSNT_06256___    722 TCATTACGTTCATTCAGAGGGAAATGACTCATGAAGACGGAA----GCTT    767
                     ||||.||.||..|.|...|.||||||||..||||     |||    ||||
BL00131___yya    722 TCATCACATTTGTCCGCCGCGAAATGACCGATGA-----GAAAGGCGCTT    766

BSNT_06256___    768 TTT-CTCTGCTTTAGACGCGGATACAGAAGGAGAAGAAGGAAAGTACTAC    816
                     ||| .||.||..|.||.||.||.||.|||||.|.|||.||.||.||.||.
BL00131___yya    767 TTTATTCAGCGCTTGATGCCGACACGGAAGGCGTAGAGGGCAAATATTAT    816

BSNT_06256___    817 GTGTGGTCAAAGGAAGAAATTCTGAAAACGCTCGGGGACGATCTCGGAAC    866
                     |||||||||||.||||||.|.||..|||||||.||.||.||.||.||  |
BL00131___yya    817 GTGTGGTCAAAAGAAGAAGTCCTTGAAACGCTTGGAGATGAACTTGG--C    864

BSNT_06256___    867 G--CTGTATTGCCAAGTGTATGACATCACTGAAGAAGGAAACTTTGAAGG    914
                     |  .||||||||...||.||..|||||||..|||||||.||.||||||||
BL00131___yya    865 GAATTGTATTGCGCGGTCTACAACATCACGCAAGAAGGGAATTTTGAAGG    914

BSNT_06256___    915 CAAAAATATTCCTAACCTCATTCACACAAAGTGGGAACAAATCAAAGCCG    964
                     |.|.||||||||.|||.|.||..||||.|.|..||||.|.|||||.|..|
BL00131___yya    915 CCATAATATTCCAAACTTGATCTACACCAGGCTGGAAGACATCAAGGATG    964

BSNT_06256___    965 ATGCCGGGTTAACCGAAAAAGAGC-TCAGTCTCAAACTCGAAGAAGCAAG   1013
                     |...||.|.|.||.||..|||||| |||| ..|||.||.||||||||.||
BL00131___yya    965 AATTCGCGCTGACAGATGAAGAGCTTCAG-AACAAGCTTGAAGAAGCGAG   1013

BSNT_06256___   1014 -ACAGCAGC-TCTTGAAGACACGCGAGGAAAGAACCTATCCGCATGTCGA   1061
                      ||| .||| |.||||| |.|||..||||||||||.|||||.||||||||
BL00131___yya   1014 AACA-AAGCTTTTTGAA-AAACGTCAGGAAAGAACGTATCCTCATGTCGA   1061

BSNT_06256___   1062 TGATAAAGTGCTTACCTCATGGAACGCGCTGATGATCGCGGGTCTTGCGA   1111
                     .|||||||||||.||.||.||||||||.||||||||||||||||||||.|
BL00131___yya   1062 CGATAAAGTGCTGACTTCTTGGAACGCTCTGATGATCGCGGGTCTTGCCA   1111

BSNT_06256___   1112 AAGCGGCAAAGGTATACCAGGAACCGAAATATCT----------------   1145
                     |||||||.||.||.|||.|.|..||..||||.||                
BL00131___yya   1112 AAGCGGCGAAAGTCTACAATGCGCCCGAATACCTGGAGATGGCGCGAGCT   1161

BSNT_06256___   1146 -CAGCCTAGCGAAAGACGCCATCACATTTATTGAAAACAAATTAATCATC   1194
                      |||||.||                 |||||.||.||.|||||.||  ||
BL00131___yya   1162 GCAGCCGAG-----------------TTTATCGAGAATAAATTGAT--TC   1192

BSNT_06256___   1195 --GACGGCCGTGTAATGGTCCGATATCGAGACGGCGAAGTGAAAAACAAA   1242
                       |||||.||..|.||||||||.||.||.||||||||.||||||||.|||
BL00131___yya   1193 AAGACGGTCGCATCATGGTCCGCTACCGTGACGGCGAGGTGAAAAATAAA   1242

BSNT_06256___   1243 GGCTTTATCGACGATTACGCTTTTCTCCTATGGGCTTATCTGGATCTCTA   1292
                     ||.||||||||.||.|||||.||.||.||.|||||.||..|.||..|.||
BL00131___yya   1243 GGATTTATCGATGACTACGCCTTCCTGCTGTGGGCCTACATCGAATTGTA   1292

BSNT_06256___   1293 TGAAGCTTCGTTTGATCTTTCTTATTTACAAAAAGCGAAGAAACT-GA--   1339
                     ||||||.||..|||||.|..|..||||.|.||||||.||.||.|| ||  
BL00131___yya   1293 TGAAGCATCACTTGATTTAACCGATTTGCGAAAAGCCAAAAAGCTCGAAG   1342

BSNT_06256___   1340 CAGACGATATCATCA----GCTTATTTTGGGATGAGGAGCATGGCGGATT   1385
                     ||||      |||.|    || |.||.||||||||.|||||.|||||.||
BL00131___yya   1343 CAGA------CATGAAGGGGC-TGTTCTGGGATGAAGAGCACGGCGGTTT   1385

BSNT_06256___   1386 CTACTTCACCGGACACGATGCAGAAGCCTTAATCGTACGGGAAAAAGAAG   1435
                     .||.||.||.|||..||||||.||.||.||.|||||.|||||.|||||||
BL00131___yya   1386 TTATTTTACGGGAAGCGATGCCGAGGCTTTGATCGTGCGGGATAAAGAAG   1435

BSNT_06256___   1436 TGTACGACGGCGCCGTGCCTTCCGGAAACAGTGTGGCGGCTGTTCAGCTG   1485
                     |.||||||||||||.|.||.|||||||||.|.||...|||.||.||||||
BL00131___yya   1436 TATACGACGGCGCCCTCCCGTCCGGAAACGGCGTCCTGGCCGTGCAGCTG   1485

BSNT_06256___   1486 CTGCGTCTCGGGCAAG-TCACAGGCGACTCATCACTAATTGAAAAAGCAG   1534
                     ...||.|| |||||.| |.||.|||||||..||.||...|||..||||.|
BL00131___yya   1486 TCCCGGCT-GGGCAGGCTGACTGGCGACTTGTCGCTCCATGATCAAGCGG   1534

BSNT_06256___   1535 AAACGATGTTTTCCGTGTTCAAGCCAGACATCGACGCGTATCCGAGCGGC   1584
                     .||..||||||.|.|..|||.|...||||.||...||.||||||||||||
BL00131___yya   1535 CAAAAATGTTTGCTGCCTTCCATGGAGACGTCTCTGCTTATCCGAGCGGC   1584

BSNT_06256___   1585 CATGCTTTCTTTATGCAAAGTGTATTAAGACATCTGATGCCTAAGAAAGA   1634
                     |||.|...||||.|.|||.||.|..|.||.||..|.|||||..|.||.||
BL00131___yya   1585 CATACAAACTTTCTCCAAGGTTTGCTGAGCCAATTCATGCCGCAAAAGGA   1634

BSNT_06256___   1635 AATCGTGATTTTTGGAAGTGCAGAC-----GATCCAGCCAGAAAACAAAT   1679
                     ||||||..|..|.|||     |.||     |||||.|.||||.|..|.||
BL00131___yya   1635 AATCGTTGTGCTCGGA-----AAACGGAATGATCCGGACAGACAGAAGAT   1679

BSNT_06256___   1680 CATAACAGAGC--TCCAAAAAGCCTTTAAGCCTAACGACTCCATTCTGGT   1727
                     |.||  ||.||  |.||..|.|||||..||||.||..|..||.|.||.|.
BL00131___yya   1680 CGTA--AGCGCTTTGCAGCAGGCCTTCCAGCCGAATTATGCCGTCCTCGC   1727

BSNT_06256___   1728 AGCAGAGCAT--CCTGATCAATGCAAAGACATTGCGCCA-TTCGCGGCAG   1774
                     .|||||  ||  |||||..|.|.|||||..||||| |.| ||.|||||.|
BL00131___yya   1728 CGCAGA--ATCGCCTGACGATTTCAAAGGGATTGC-CGACTTTGCGGCCG   1774

BSNT_06256___   1775 ACTAC--CGCA-TC-ATAGACGGCAAAACAACCGTGTATATTTGTGAAAA   1820
                     |.|||  .||| || |||    .||||||.||.||.||||||||||||||
BL00131___yya   1775 AATACAAAGCAGTCGATA----ACAAAACGACTGTCTATATTTGTGAAAA   1820

BSNT_06256___   1821 CTTCGCCTGCCAGCAGCCGACAACGAATATCGAAGAAGCCATCCACACGT   1870
                     .|||||||||..|||||||||.||||||||.||.|||||..||       
BL00131___yya   1821 TTTCGCCTGCAGGCAGCCGACGACGAATATAGACGAAGCGCTC-------   1863

BSNT_06256___   1871 TAATAAGCAGCAGGGATTAA   1890
                         .|.|||| .||.||||
BL00131___yya   1864 ----GATCAGC-TGGTTTAA   1878


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