Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05743 and BL00136

See Amino acid alignment / Visit BSNT_05743 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:51
# Commandline: needle
#    -asequence dna-align/BSNT_05743___thrZ.1.5803.seq
#    -bsequence dna-align/BL00136___thrZ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05743___thrZ-BL00136___thrZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05743___thrZ-BL00136___thrZ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05743___thrZ
# 2: BL00136___thrZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1967
# Identity:    1349/1967 (68.6%)
# Similarity:  1349/1967 (68.6%)
# Gaps:          97/1967 ( 4.9%)
# Score: 4302.5
# 
#
#=======================================

BSNT_05743___      1 ATGAGT---------AAACATGTACACATTCAGCTTCCGGACGGACAGAT     41
                     ||||||         |.|.|.||.|| |||||     ..||.|||.|.|.
BL00136___thr      1 ATGAGTGAAAGTTTAATAAAAGTTCA-ATTCA-----AAGAAGGAAATAC     44

BSNT_05743___     42 CAAGGAATATCCGAAAGGCATCACAATCAAAGAAGCG----GCTGGTTCT     87
                     .|||||||.||||||.||.||.|||||.|||    ||    ||.|..||.
BL00136___thr     45 GAAGGAATTTCCGAAGGGGATAACAATAAAA----CGTATTGCAGAATCC     90

BSNT_05743___     88 ATCAGTTCCAGTCTGCAAAAGAAGGCGGCTGCAGGTCAGGTCAATGGCAA    137
                     ||.|||.|.|.|.|...||||.|.||.|.||.||...||||..|||..||
BL00136___thr     91 ATTAGTACAACTTTAAGAAAGCACGCTGTTGTAGCAAAGGTTGATGAAAA    140

BSNT_05743___    138 GCTTGTTGATCTCAGTTTCAAGCTGGAGGAGGATGCTGAGCTTTCG--AT    185
                     ..|.||.|||.|.||.|..|..||.||..||||||.|.|.|  |||  ||
BL00136___thr    141 ATTCGTGGATTTAAGCTATACCCTTGACAAGGATGTTAAAC--TCGATAT    188

BSNT_05743___    186 TGTTACACTCGATTCACAAGAAGGCTTGCAGGTGCTTCGCCACACATCAG    235
                     |.||||.||.|||||..|||||||.|||..||||.|..|.||.|||||..
BL00136___thr    189 TTTTACTCTAGATTCGAAAGAAGGTTTGTCGGTGTTAAGACATACATCCA    238

BSNT_05743___    236 CGCATGTGCTGGCCCAAGCAGTAAAACGGCTGTACGGCGAAGTGTCA--T    283
                     |.|||.|..||||.||.||.||.|||.||||.|||  .|.|||||.|  |
BL00136___thr    239 CCCATATATTGGCACACGCTGTGAAAAGGCTTTAC--AGTAGTGTAAGTT    286

BSNT_05743___    284 TGGGGGTAGGGCCTGTGATTGAAGACGGCTTCTACTATGACATGAAGCTG    333
                     ||||..|.||.||.||.||||||||.|..||.|.||||||..||||.||.
BL00136___thr    287 TGGGTATTGGACCAGTAATTGAAGATGAGTTTTTCTATGATTTGAAACTT    336

BSNT_05743___    334 GGGAAAAGCTTGGCATCAGGA-GACTTAGAGGCCATCGAAAAAGAAATGA    382
                     |...|.||.|||.| ||..|| ||.|||...||.||.|||...||.|||.
BL00136___thr    337 GAACACAGTTTGTC-TCCCGAGGATTTACTAGCAATTGAACGTGAGATGG    385

BSNT_05743___    383 AAAACATAATAAATGAGAACCTTGAAATCAAACGTATAGAGGTTTCTTAC    432
                     ||||.||.||.||.|||||..|.|||||.|||||.||.|..||.|||||.
BL00136___thr    386 AAAAGATTATTAAGGAGAATATAGAAATTAAACGAATTGTTGTCTCTTAT    435

BSNT_05743___    433 GAAGAAGCTGATGAGCTGTTTGCACAAAAAGACGAGCGGCTCAAGCTTGA    482
                     ||.||||||||..||.|.||||.|.||||..|.||.|...|.||||||||
BL00136___thr    436 GAGGAAGCTGAAAAGTTATTTGAAGAAAATAATGAACCATTAAAGCTTGA    485

BSNT_05743___    483 GATTTTAA-AGGATATTCCGCGCGGGGAGGATATCACACTGTACCAGCAA    531
                     .||.|||| |||| |||||....||..|.||.||.||.||.|||||.||.
BL00136___thr    486 AATATTAAGAGGA-ATTCCAAAAGGCCAAGAAATAACTCTTTACCAACAG    534

BSNT_05743___    532 GGGGAATTCGTTGACCTGTGCCGCGGGCCGCATCTTCCTTCTACAGGGAT    581
                     ||.|||||..||||.||.||.|||||.||.||.|||||.||.||.||..|
BL00136___thr    535 GGAGAATTTATTGATCTTTGTCGCGGTCCACACCTTCCATCAACTGGTTT    584

BSNT_05743___    582 GATCAAGGCGTTCAAACTGACAAGAGTATCAGGCGCTTATTGGCGCGGAG    631
                     .||.||.||.||.|||.|.||..|.|||||.||.|||||||||.|.|||.
BL00136___thr    585 CATTAAAGCATTTAAATTAACTCGTGTATCTGGAGCTTATTGGAGAGGAA    634

BSNT_05743___    632 ACAGCAAAAATGAAGTCCTGCAGCGGGTGTACGGGGTTGCGTTTCAAAAG    681
                     |..||.||||.|||||.||.||.||.||.||.||.||.||.|||.|||||
BL00136___thr    635 ATCGCCAAAAAGAAGTTCTTCAACGAGTTTATGGAGTAGCTTTTAAAAAG    684

BSNT_05743___    682 AAAAAAGATTTGGATGCGCACCTGCATATGCTGGAAGAAGCGGCAAAACG    731
                     |||.|.|||||..|||...|.||..||.|..|.|||.||||.|||||||.
BL00136___thr    685 AAAGACGATTTAAATGAATATCTATATTTTTTAGAACAAGCAGCAAAACA    734

BSNT_05743___    732 AGACCATCGCAAGCTCGGCAAACAGTTAGGGCTGTTTATGTTTTCTGAAG    781
                     .||.|||||..||.|.||.|||||.||||...|.||||||||.||.||.|
BL00136___thr    735 TGATCATCGACAGTTAGGAAAACAATTAGATTTATTTATGTTCTCAGAGG    784

BSNT_05743___    782 AAGCGCCGGGGATGCCGTTTTATTTGCCGAAAGGGCAGATTGTCCGCAAT    831
                     ||||.|||||.|||||.|||||..|.||.|||||.||.|||||..|.||.
BL00136___thr    785 AAGCACCGGGAATGCCCTTTTACCTACCTAAAGGACAAATTGTTAGAAAA    834

BSNT_05743___    832 GAGCTGGAACGCTTCTCGCGTGAACTGCAAACAAATGC--CGGCTACAAT    879
                     ||..||||....||.||.||||||||.||||..|||||  ||  |||.||
BL00136___thr    835 GAATTGGAGAAATTATCCCGTGAACTTCAAAATAATGCATCG--TACGAT    882

BSNT_05743___    880 GAGGTGCGTACGCCGTTTATGATGAATCAGCGGTTATGGGAGCAGTCAGG    929
                     |||||.|.|||.|||||||||||||||.|.||.|||||||||.|.||.||
BL00136___thr    883 GAGGTCCATACACCGTTTATGATGAATTATCGATTATGGGAGAAATCCGG    932

BSNT_05743___    930 CCATTGGGACCATTATCGCGACAATATGTACTTTTCAGAAGTGGATGATA    979
                     .||||||||.|||||.|..||.||||||||||||||.||.||.|||.|||
BL00136___thr    933 TCATTGGGATCATTACCAAGAAAATATGTACTTTTCTGAGGTCGATAATA    982

BSNT_05743___    980 CAAGATTCGCAATGAAGCCGATGAATTGCCCCGGCCACATGCTCATCTTT   1029
                     |||..||.|||||.||.||.||||||||.||.||.||.|||||.||||||
BL00136___thr    983 CAAAGTTTGCAATCAAACCAATGAATTGTCCTGGACATATGCTAATCTTT   1032

BSNT_05743___   1030 AAAAACAGCCTGTATTCTTATCGGGATCTGCCGATTCGCATGGCGGAATT   1079
                     |||||.|..||.||.||.|||||.|||||.||.|||||..|||||||||.
BL00136___thr   1033 AAAAATAATCTTTACTCCTATCGAGATCTACCTATTCGATTGGCGGAATA   1082

BSNT_05743___   1080 CGGACAGGTGCATCGCCATGAATACAGCGGCGCTTTAAACGGAATGCTTC   1129
                     .|||||.||.|||||.|||||||..||.||..|.|||||||||.||||||
BL00136___thr   1083 TGGACAAGTTCATCGACATGAATTTAGTGGTTCATTAAACGGATTGCTTC   1132

BSNT_05743___   1130 GCGTTCGGACGTTCTGTCAGGATGACGCCCATATTTTCGTTCGGGAGGAT   1179
                     |.||.||.||.||.||||||||||||||.||.||.||.|||||.||.|||
BL00136___thr   1133 GGGTACGCACATTTTGTCAGGATGACGCTCACATCTTTGTTCGAGAAGAT   1182

BSNT_05743___   1180 CAGATTGAGAGTGAGATCAAAGAAGCGA-TTCGGCTGATTGATGAGGTAT   1228
                     ||.|||||.|||||.|| .||||||..| |||...|.|||||..|.||.|
BL00136___thr   1183 CAAATTGAAAGTGAAAT-TAAGAAGGTATTTCATTTAATTGACCAAGTGT   1231

BSNT_05743___   1229 ATCGGACATTTGGTTTCGAGTATTCAGTTGAGCTTTCGACTCGCCCGGAG   1278
                     ||||.||..|||||||.|||||||||||.||.||.||.|||||.||.||.
BL00136___thr   1232 ATCGTACTATTGGTTTTGAGTATTCAGTGGAACTGTCTACTCGGCCAGAT   1281

BSNT_05743___   1279 GATTCATTAGGCAATGA-CAGCCTTTGGGAAGCGTCGGAACGTGCCTTAG   1327
                     |||||||||||.|||.| || |||.|||||.|..||.||..|..|.|||.
BL00136___thr   1282 GATTCATTAGGAAATAATCA-CCTATGGGAGGTTTCTGAGGGATCATTAA   1330

BSNT_05743___   1328 CACGCGTCCTTGAGGAGCTTGGC-CTCTCTTATGAGATCAATGAAGGCGA   1376
                     .|...||.|||||.|| .||.|| .||...|||.|..|.||||||||.||
BL00136___thr   1331 AAAATGTGCTTGACGA-TTTAGCAATCAAATATCAAGTTAATGAAGGTGA   1379

BSNT_05743___   1377 TGGGGCGTTTTACGGGCCGAAAATTGATTTCCACATAAAAGATGCCCTGA   1426
                     ||||||.||||||||.||.||||||||||||||.||.||||||||..|.|
BL00136___thr   1380 TGGGGCTTTTTACGGACCAAAAATTGATTTCCATATTAAAGATGCTTTAA   1429

BSNT_05743___   1427 AACGGAGCCACCAATGCGCGACTATTCAGCTTGATTTTCAAATGCCGGAA   1476
                     |||||||.||.||.||||..||.||.||.|||||||||||.|||||.|||
BL00136___thr   1430 AACGGAGTCATCAGTGCGGAACAATCCAACTTGATTTTCAGATGCCTGAA   1479

BSNT_05743___   1477 AAATTTGATTTAACATATATCAACGAACACAATGAAAAGGTTCGTCCCGT   1526
                     |||||||||||.||.|||||.||..|..|.||.|||||.||||||||.||
BL00136___thr   1480 AAATTTGATTTGACTTATATTAATCATAATAACGAAAAAGTTCGTCCTGT   1529

BSNT_05743___   1527 TGTCATCCACAGAGCGGTTTTCGGCTCAATCGACCGTTTCTTCGGCATTT   1576
                     |||.||||||.|.||..||||.||.||.||.||.|||||.||.||.||||
BL00136___thr   1530 TGTTATCCACCGTGCTATTTTTGGTTCTATTGATCGTTTTTTTGGAATTT   1579

BSNT_05743___   1577 TGATCGAGCATTACGGCGGG-GCTTTTCCAGTCTGGCTCGCACCGCTCCA   1625
                     |.||.||||||| ..||||| |.||||||.||.|||||.||.||..|.||
BL00136___thr   1580 TAATAGAGCATT-TTGCGGGTGTTTTTCCTGTTTGGCTTGCCCCTATTCA   1628

BSNT_05743___   1626 GGTTCAAATCATACCGGTTTCTCACGTTCACTTAGACTATTGCAGAAAGG   1675
                     .||||||||.||.||..||||.||..|||||.|.||.|||||...|..|.
BL00136___thr   1629 AGTTCAAATTATTCCTATTTCACATATTCACCTGGAGTATTGTTTAGGGA   1678

BSNT_05743___   1676 TGCAGGCGGAGCTGAAGCAGGCGGGGATAAGAGCCGGCATTGATGAGCGC   1725
                     |..||.||||.||.||.||....||||||||||.....|||.|.|||.|.
BL00136___thr   1679 TTAAGTCGGAACTCAAACAACACGGGATAAGAGTACAAATTAACGAGAGT   1728

BSNT_05743___   1726 AATGAGAAGCTGGGCTATAAAATCAGAGAATCGCAGGTGCAGAAAATCCC   1775
                     |||.|.|||.|.||.||.|||||.||.|||.|.|||||.||.||||||||
BL00136___thr   1729 AATCAAAAGTTAGGGTACAAAATTAGGGAAGCACAGGTTCAAAAAATCCC   1778

BSNT_05743___   1776 GTACGTGC--TGGTGCTTGGAGATCATGA-------------GGAGCAGG   1810
                     .||  |.|  |.||..|.|||||..||||             ||||.|  
BL00136___thr   1779 CTA--TACATTAGTAGTAGGAGACAATGAAATTAAAGAAAACGGAGTA--   1824

BSNT_05743___   1811 AGAATGCGGTA--AACGTCCGCCGATTCGG-ACATCAGCAGAGTGAACAC   1857
                       |||   |||  ||.||..|..||   || |||.||..|.|.||     
BL00136___thr   1825 --AAT---GTAAGAAAGTATGGAGA---GGAACAACAAAAAAATG-----   1861

BSNT_05743___   1858 GTTCCTTTCCAAACTTTTAAAGATAAACTTGTCAAACAGGTGGAAAATCG   1907
                     .|||..||..||.||||.|||.|.|.|.||..||        |.||||..
BL00136___thr   1862 TTTCAATTGAAAGCTTTAAAAAAAATATTTTGCA--------GCAAATAA   1903

BSNT_05743___   1908 AGGCATGTAG-------   1917
                     ||.||.||||       
BL00136___thr   1904 AGACACGTAGTGTCTAG   1920


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