Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00391 and BL00163
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:03
# Commandline: needle
# -asequence dna-align/BSNT_00391.1.5803.seq
# -bsequence dna-align/BL00163___ybfH.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00391-BL00163___ybfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00391-BL00163___ybfH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00391
# 2: BL00163___ybfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 938
# Identity: 359/938 (38.3%)
# Similarity: 359/938 (38.3%)
# Gaps: 454/938 (48.4%)
# Score: 1037.5
#
#
#=======================================
BSNT_00391 1 ATGAACATACAAAGAGAAACTTCGGGGCATATCGCAGCCATTGTG---AC 47
|||||.|.|..|.|.|||||..|.||.||..||||||| |||| ||
BL00163___ybf 1 ATGAAGACAAGACGCGAAACCGCCGGACACCTCGCAGC---TGTGATCAC 47
BSNT_00391 48 CATTCTGATTTGGGGGACGACCTTTATTTCGACAAAAGTTCTGCTGGCTG 97
.||..|.||.|||||.||.||.|||.|.||.|||||.||.|||||.|..|
BL00163___ybf 48 GATCATCATCTGGGGTACTACTTTTGTCTCAACAAAGGTGCTGCTCGAGG 97
BSNT_00391 98 ACTTCTCTCCAATGGAAATATTATTTTATCGGTTTTTGATGGGCTTTATC 147
|.|||.|.||..|.||.|||||.|||||.||.|||.|.||.||.||.||.
BL00163___ybf 98 ATTTCCCGCCCGTAGATATATTGTTTTACCGTTTTCTCATCGGGTTGATT 147
BSNT_00391 148 GCTCTTATCCTCGTCCGTCCCAACATGATTCCGTTCAGAAATTGGCGGC- 196
|..||.|||.|.||.|.|||..|..||.|..|.|||.|.|..|||.|||
BL00163___ybf 148 GTGCTGATCATGGTGCATCCGCATGTGCTGACTTTCCGGAGCTGGAGGCA 197
BSNT_00391 197 AGGAGCTGTTGTTTGCCGGAGCTGGTTTATTTGGCGTAAC-CTTATACTT 245
||.||| |.|||||||.|||||.|||||||..||.||.|| ||| |||||
BL00163___ybf 198 AGAAGC-GCTGTTTGCGGGAGCAGGTTTATGCGGAGTGACGCTT-TACTT 245
BSNT_00391 246 TCTATTAGAAAATATAGCTCTCAC-CTATACATACGCATCCAATGTCGGC 294
|||.||.|||||.||.||.||.|| || |||.|||||.||.||.|.||||
BL00163___ybf 246 TCTGTTGGAAAACATCGCGCTTACTCT-TACCTACGCCTCAAACGCCGGC 294
BSNT_00391 295 ATGATCGTGTCCATTATACCGATGATCACTGCGGTTTTGGCCCATTTTCT 344
||||||||..|..||||.|||||||||||.|||||.|||||.||||||||
BL00163___ybf 295 ATGATCGTCGCGGTTATTCCGATGATCACCGCGGTATTGGCGCATTTTCT 344
BSNT_00391 345 GC--TCGAAGGCGAAAAACTG------CGTCTGACTTTTTTGATTGGATT 386
.| ||| ||||||||.||| || .|||||.|||||.||
BL00163___ybf 345 CCTTTCG--GGCGAAAAGCTGGAGCCCCG------CTTTTTCATTGGGTT 386
BSNT_00391 387 TGTCTCGG----CACTGATCGGGCTT----TTATTGATTACGTTTAACGG 428
.|.|.|.| |||| ||.||| |.||| || .|||||.||
BL00163___ybf 387 CGCCGCCGCTTTCACT----GGACTTGCGCTCATT--TT--CTTTAATGG 428
BSNT_00391 429 -CAATGTGGTACTGCGTCTA-----AATCCGC-CGGAGACATCATGGCAG 471
||| .||.|.|| || ||||||| |||.|||||..|.||.|
BL00163___ybf 429 ACAA-ATGATGCT-----TAAATTGAATCCGCTCGGCGACATTCTCGCTG 472
BSNT_00391 472 CCGGGGCTGCTCTCGTGTTTGGCGG-ATACTCGATATTCATGA------- 513
|.|...|.||..|||| .|.||||| |||..||||.||.||||
BL00163___ybf 473 CTGCCTCCGCATTCGT-CTGGGCGGCATATGCGATTTTGATGAAAAAAAT 521
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 522 CAGCACATTCGGTTACCATACAATCCAATGCACACAGCGGATCTTTCTGT 571
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 572 ACGGTTTGCTATTCATGGTTCCCGCTCTGTTCCTGTTTGATTTCCGCTTC 621
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 622 GACGCAAGCCCTTTTTCCTCCCCCGTCAATTGGTTGAACATCCTATTCTT 671
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 672 AGGCGCGGGCGCATCTGCGCTTTGCTTTGTGACATGGAACTGGTCGGTCG 721
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 722 GTGTGCTTGGAGCGGTAAAAACGAGCGCTTATATCTATATGGTGCCCGTC 771
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 772 ATCACTATTGCGGCATCCGTTATCATTCTGCAAGAAAAACTGACATGGGT 821
BSNT_00391 513 -------------------------------------------------- 513
BL00163___ybf 822 TGCTTTTTGCGGAGGAGCGCTCACATTGGCCGGCCTTTATATTTCTGAAA 871
BSNT_00391 513 -------------------------------------- 513
BL00163___ybf 872 CAAAACCAAAACCGCAGCTGAAGGAGGAACAAATTTGA 909
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