Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_06074 and BL00187

See Amino acid alignment / Visit BSNT_06074 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_06074___yxeB.1.5803.seq
#    -bsequence dna-align/BL00187___yxeB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_06074___yxeB-BL00187___yxeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06074___yxeB-BL00187___yxeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06074___yxeB
# 2: BL00187___yxeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 988
# Identity:     730/988 (73.9%)
# Similarity:   730/988 (73.9%)
# Gaps:          50/988 ( 5.1%)
# Score: 2633.0
# 
#
#=======================================

BSNT_06074___      1 ATGAAAAAGAACATATTGCTCGTGGGCATGCTTGTGCTGCTTCT-CATGT     49
                     .|||||||||||.|||||.|..|.||..|..||.||||| ||.| .||..
BL00187___yxe      1 GTGAAAAAGAACTTATTGATAATCGGTTTAGTTATGCTG-TTGTGTATAG     49

BSNT_06074___     50 TTGTCAGCGCTTGC---AGCGGCACGGCTTCTAAAGGGAGC-----TCAA     91
                     |.||||||||.|||   |||||||..||.||.||.||.|||     ..||
BL00187___yxe     50 TGGTCAGCGCCTGCGGAAGCGGCAATGCGTCAAACGGTAGCAAAGAAAAA     99

BSNT_06074___     92 GCGATTCTGCTTCCGAAAAAACAGAAATGAGAACATACAAATCACCAAAA    141
                     |||     |||   |||.|||| ||.|  ||||||||..||||    ||.
BL00187___yxe    100 GCG-----GCT---GAAGAAAC-GACA--AGAACATATCAATC----AAC    134

BSNT_06074___    142 G---GGAA-CGTCAACATTCCTGCACATCCGAAACGCATCGTCACTGATT    187
                     |   |||| |||.||.|||||..|||||||.||.||||||||.||.||.|
BL00187___yxe    135 GCGTGGAAGCGTGAAGATTCCAACACATCCAAAGCGCATCGTGACAGACT    184

BSNT_06074___    188 TTTATGCCGGTGAATTGCTGTCTGTCGGGGCCAATGTGGTCGGCTCAGGC    237
                     ||||||||||||||.||.|..|.|||||.||||||||.||||||||.|||
BL00187___yxe    185 TTTATGCCGGTGAACTGTTCACGGTCGGCGCCAATGTCGTCGGCTCCGGC    234

BSNT_06074___    238 TCATGGTCATTTGATAATCCGTTTTTAAA--ATCAAAGCTGAAAAATGTG    285
                     ||.|||||.||....|||||.||||||||  |.|..|  |||||.||||.
BL00187___yxe    235 TCGTGGTCTTTCTCCAATCCATTTTTAAAGGACCGTA--TGAAAGATGTA    282

BSNT_06074___    286 AAGGATGTTGGTGATCCAATAAGCGTTGAAAAAGTGATGGAGCTTCAGCC    335
                     |.||||.|.||.||.||.||.|..||.||||||||.|||.||||..||||
BL00187___yxe    283 ACGGATTTAGGCGACCCGATTAATGTGGAAAAAGTCATGAAGCTGAAGCC    332

BSNT_06074___    336 TGACTTAATTGTTGTCATGAATGAAGAGAATGTTGATAAATTAAAGAAAA    385
                     |||.||||||||.||.|||||.||.||.|||...||.|||.|....||||
BL00187___yxe    333 TGATTTAATTGTCGTGATGAACGATGATAATTACGACAAACTGTCCAAAA    382

BSNT_06074___    386 TCGCTCCGACTGTTGTCATACCTTATAACACAGCGAAAAACGTAGAAGAC    435
                     ||||.|||||||||||.||.|||||||||||.||||||||.||..|.||.
BL00187___yxe    383 TCGCACCGACTGTTGTGATTCCTTATAACACGGCGAAAAATGTTCAGGAA    432

BSNT_06074___    436 ACAGTCAGCATGTTCGGAGATATCGCCGGAGCGAAAGACAAAGC----AA    481
                     ||.||.|..||||||||.||.||.||.|||||.|||||..||||    .|
BL00187___yxe    433 ACTGTTAAGATGTTCGGCGACATTGCAGGAGCTAAAGAAGAAGCTGAACA    482

BSNT_06074___    482 AATCCTTTATGGCTGACTTTAACAAAAAAGCGGAAGCAGCTAAGAAGAAA    531
                     |.|||||    ||.||.||..||...|||.||.|||||||.|.|||.|||
BL00187___yxe    483 ATTCCTT----GCCGATTTCGACCGGAAATCGAAAGCAGCGAGGAAAAAA    528

BSNT_06074___    532 ATTGCCGGCGTCATCGACAAAGATGCAACCTTCGGCATTTATGAAAACAC    581
                     ||.||....|||.||||||||.||||.||.|||||.||||||||||||||
BL00187___yxe    529 ATCGCTCAAGTCGTCGACAAAAATGCTACTTTCGGTATTTATGAAAACAC    578

BSNT_06074___    582 AGACAAGGGCGAATTCTGGGTGTTCAATGACAATGGCGGACGCGGCGGCC    631
                     |||.||.|||.||||||||||||||||||||||.|||||.|||||.||||
BL00187___yxe    579 AGAAAAAGGCCAATTCTGGGTGTTCAATGACAACGGCGGCCGCGGAGGCC    628

BSNT_06074___    632 AAGCTGTATACAATGCACTTGGGTTAAAAGCGCCTGAAAAAATTGAGCAA    681
                     ||||.||.|||||.||.||.||.|||||.|||||||||||.|||.|..||
BL00187___yxe    629 AAGCCGTGTACAACGCGCTCGGCTTAAAGGCGCCTGAAAAGATTCAAAAA    678

BSNT_06074___    682 GATGTCATCAAAAAAGGAGAGATGAAACAGCTCTCTCAAGAGGTTATTCC    731
                     ||..||.||||||||||.||.||.|||.|.||.||....||.||..|.||
BL00187___yxe    679 GACATCTTCAAAAAAGGCGAAATCAAAGAACTTTCCTTGGAAGTCGTACC    728

BSNT_06074___    732 TGAGTATGCCGCAGATTATATGTTCATTACGGATTACAACCCGAAAGGCG    781
                     |||.|||||.|||||.||.||||||.|.||.||.||.||||||||.||||
BL00187___yxe    729 TGAATATGCAGCAGACTACATGTTCGTGACAGACTATAACCCGAACGGCG    778

BSNT_06074___    782 AAAGCAAAACACTCGACAAGCTGGAGAATTCCTCCATTTGGAAAAATCTT    831
                     |.||||||||.||.|||||||||.||.|.||.||||||||||||||.|||
BL00187___yxe    779 ACAGCAAAACGCTGGACAAGCTGAAGCAGTCTTCCATTTGGAAAAACCTT    828

BSNT_06074___    832 GACGCTGTTAAACATAATCGCGTGTTTATCAATGACTTTGACTCGTTCTA    881
                     |||||.||.|||.|.||.||.||.||||||||.|||||||||.|||||||
BL00187___yxe    829 GACGCCGTCAAAAACAACCGTGTCTTTATCAACGACTTTGACACGTTCTA    878

BSNT_06074___    882 CCCGTACGACCCGATTTCTGTCAGCAAACAGGTGGATATCATCACCGACA    931
                     .||||||||.|||||.|||||||||||||||||.|||.|.||.||.||.|
BL00187___yxe    879 TCCGTACGATCCGATCTCTGTCAGCAAACAGGTTGATTTGATTACGGAGA    928

BSNT_06074___    932 TGCTGATCAAACGGGCCGAA---GAAAATAAAAAATAA    966
                     |||||.|.||.||   ||||   ||.|||||..||   
BL00187___yxe    929 TGCTGGTGAAGCG---CGAAAAGGAGAATAAGTAA---    960


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