Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05153 and BL00204

See Amino acid alignment / Visit BSNT_05153 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:16
# Commandline: needle
#    -asequence dna-align/BSNT_05153___yvfR.1.5803.seq
#    -bsequence dna-align/BL00204___yvfR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05153___yvfR-BL00204___yvfR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05153___yvfR-BL00204___yvfR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05153___yvfR
# 2: BL00204___yvfR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 948
# Identity:     647/948 (68.2%)
# Similarity:   647/948 (68.2%)
# Gaps:          96/948 (10.1%)
# Score: 1977.5
# 
#
#=======================================

BSNT_05153___      1 ATGAAAGAAGTAGTAACAGTAAGCAACGTGACAAA-ACATTTCCATCGAA     49
                     ||||...|.||.||||...|.|..||.|||||||| ||| ||||..|.||
BL00204___yvf      1 ATGAGCAATGTTGTAAGCTTGACGAATGTGACAAAGACA-TTCCGCCAAA     49

BSNT_05153___     50 AAACCGCTGTAAACCACATCAG---CTTCAGTATTGAAAAAGGAGAAATT     96
                     ||||.||.||..|.||.|| ||   .||||  |||.||||||||||||||
BL00204___yvf     50 AAACGGCGGTTGATCAGAT-AGATTTTTCA--ATTAAAAAAGGAGAAATT     96

BSNT_05153___     97 GCAGCCATTCTCGGGCCAAATGGGGCAGGGAAGACGAC--CGTCATCTCT    144
                     |.|||||||||.||||||||.||.||.|||||.||.||  ||  ||.||.
BL00204___yvf     97 GTAGCCATTCTAGGGCCAAACGGAGCCGGGAAAACAACAACG--ATTTCA    144

BSNT_05153___    145 ATGATATTAGGATTGCTGAAACCGAGTGAGGGAGAAATCAAACTATTTAA    194
                     ||||||||.||..||.|.|||||||..|..||..|.||||.|.||||   
BL00204___yvf    145 ATGATATTGGGGCTGTTAAAACCGACGGCTGGCAACATCACATTATT---    191

BSNT_05153___    195 CCGGGTTC----CCG-ATGATCAACAGGTTCGTGAAAAAATAGGTGTAAT    239
                       .|.|||    ||| ||||..|||.|||.|||||||||||.||....||
BL00204___yvf    192 --CGATTCCATGCCGCATGAAAAACGGGTGCGTGAAAAAATCGGCACGAT    239

BSNT_05153___    240 GCTTCAGGAAGTAAGTGTCATGCCGGGCCTTAAGGTG--GATGAAATTCT    287
                     |||.||||||||.||.||||||||.||  ||...|||  |.||||||..|
BL00204___yvf    240 GCTCCAGGAAGTCAGCGTCATGCCTGG--TTTGCGTGCAGGTGAAATCAT    287

BSNT_05153___    288 TGAACTCTTCCGGAGCTATTATCCGAATCCATTGTCCATGAAAGAACTCG    337
                     .||||||.||||||||||.|||||.||.||..|.|||.|..||.|    |
BL00204___yvf    288 CGAACTCATCCGGAGCTACTATCCAAAGCCTCTATCCTTTCAAAA----G    333

BSNT_05153___    338 TTT----CGTTAACAGCACTCACCAAAGAA-GATTTGAAAACA-AGAGCA    381
                     .||    ||||.||||...|.| ||.|.|| |||||.|||||| || |||
BL00204___yvf    334 CTTAGAACGTTGACAGGTTTGA-CAGACAAGGATTTAAAAACACAG-GCA    381

BSNT_05153___    382 GAAAAATTATCCGGCGGACAAAAACGCCGTTTGAGCTTTGCTTTGGCTCT    431
                     |||||.||.||||||||.|||||.||.|||.|..|||||||.|||||.||
BL00204___yvf    382 GAAAAGTTGTCCGGCGGGCAAAAGCGGCGTCTAGGCTTTGCCTTGGCACT    431

BSNT_05153___    432 TGCCGGGAACCCAGAGCTGCTTATACTTGATGAACCGACAGTCGGCATGG    481
                     ||||||..|.|||||.|||.|.||..||||.|||||.||.||||||||||
BL00204___yvf    432 TGCCGGCGATCCAGAACTGATGATCTTTGACGAACCCACGGTCGGCATGG    481

BSNT_05153___    482 A---CACTTCATCAAGACACCGATTCTGGCAGACCATTCA--CGGACTGT    526
                     |   ||||   ||||||.||||.||.|||||.||..||||  ||  ||..
BL00204___yvf    482 ATATCACT---TCAAGAAACCGCTTTTGGCAAACGGTTCAATCG--CTCG    526

BSNT_05153___    527 CGGACCAAGGAAAAACAATTATTTTTTCAACTCATTATTTACAGGAAGCA    576
                     |.||.|||||||||||.||.||||||||.||.||.||.||||||||||||
BL00204___yvf    527 CAGAGCAAGGAAAAACGATCATTTTTTCTACACACTACTTACAGGAAGCA    576

BSNT_05153___    577 GACGATGCCGCACAGCGAATCCTATTTTTTACTGAAGGACAGCTTGTTGC    626
                     ||.||||||||.||.||||||.|..|.||||..||.||..||.|.||.||
BL00204___yvf    577 GATGATGCCGCGCAACGAATCTTGCTGTTTAAAGACGGCAAGATAGTAGC    626

BSNT_05153___    627 AGACGGCTCACCAATGCAAATCCGCTCAAGAAT-TCAAAAACAGTCTGTT    675
                     .||.||..|.||..|.|||||....|||||||| || .||.||.||.|||
BL00204___yvf    627 TGATGGAACGCCGCTCCAAATAAAATCAAGAATATC-GAAGCATTCGGTT    675

BSNT_05153___    676 TCCTTTACGCTTCATTCAAGTGAA---TCAGTGGA-AAGACTGTCTTGTC    721
                     ||.||||...||.||.|   .|||   |||.|.|| ||| ||||.|...|
BL00204___yvf    676 TCATTTATAGTTGATCC---GGAACAGTCACTCGAGAAG-CTGTATCAGC    721

BSNT_05153___    722 ACCCGGAAGTCG-AGAGAGTGATCCACGAGCATGAGAGAACC------AT    764
                     ||||.|||..|| |.|||.|..||     |.| .|.|.||||      | 
BL00204___yvf    722 ACCCAGAAACCGAACAGATTTTTC-----GTA-AAAACAACCGGGTTTA-    764

BSNT_05153___    765 CATCCAGACATCAAATACAGACAAAGTGTTGGCGCTGATCTTTC-AAGAA    813
                     ||||.|.||..|.|||||.||||||.|..|||..||.|| |||| .||||
BL00204___yvf    765 CATCGACACGGCCAATACGGACAAAATACTGGAACTCAT-TTTCTCAGAA    813

BSNT_05153___    814 AACATACATGCACGG-------GATATTCGAATTGAGCAAGCAACGCTCG    856
                     ||.||       |||       |||||||.||||||||..|.||..||||
BL00204___yvf    814 AAGAT-------CGGCGCTTATGATATTCAAATTGAGCGCGGAAATCTCG    856

BSNT_05153___    857 ATGAGGCATTTCGCCAGCTGGCTGAC-GGCAACAGGGAGGCGATGTGA    903
                     |.||||||||||||||    |||||| .|||  |.||||.||| ||.|
BL00204___yvf    857 AAGAGGCATTTCGCCA----GCTGACAAGCA--AAGGAGACGA-GTAA    897


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