Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04426 and BL00208
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_04426___ytsD.1.5803.seq
# -bsequence dna-align/BL00208___bceB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04426___ytsD-BL00208___bceB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04426___ytsD-BL00208___bceB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04426___ytsD
# 2: BL00208___bceB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1989
# Identity: 1468/1989 (73.8%)
# Similarity: 1468/1989 (73.8%)
# Gaps: 96/1989 ( 4.8%)
# Score: 5260.0
#
#
#=======================================
BSNT_04426___ 1 ATGAACATTAATCAGCTCATCCTGCGAAATTTGAAAAAGAATCTCCGGAA 50
||||.||||||||||||.|||.|.||.||..|||||||.|||.|.|||||
BL00208___bce 1 ATGAGCATTAATCAGCTGATCATCCGCAACCTGAAAAAAAATATACGGAA 50
BSNT_04426___ 51 TTACTATTTGTATGTGTTTGCGCTCATCTTTAGCGTGGCGCTTTATTTCG 100
.||.||..|.||||||||||||.|.|||||.||||..|||||||||||.|
BL00208___bce 51 CTATTACCTTTATGTGTTTGCGTTGATCTTCAGCGCAGCGCTTTATTTTG 100
BSNT_04426___ 101 CCTTTGTCACGCTGCAGTATGATCCAGCAATTAACGAAGTGAAGGCTTCA 150
|.|||||.|||||.||||||||||||||.||.||.|||||||||||.||.
BL00208___bce 101 CGTTTGTTACGCTCCAGTATGATCCAGCGATCAATGAAGTGAAGGCATCG 150
BSNT_04426___ 151 ATCAAGGGAGCCGCGGCTATTAAAACCGCTTCGATTTTGCTTGTGGCTGT 200
||.||.||.||.||||||.|.||..|.|||||.|||.|.||||||||.||
BL00208___bce 151 ATAAAAGGCGCAGCGGCTTTGAAGGCAGCTTCCATTCTCCTTGTGGCAGT 200
BSNT_04426___ 201 TGTGGCGATCTTCATTTTATATGCCAATACGATTTTTATTAAGAGACGGA 250
.||.|||.|.||..||||.||||||||||||||.|||||.||.|||||.|
BL00208___bce 201 AGTAGCGGTGTTTGTTTTGTATGCCAATACGATATTTATCAAAAGACGAA 250
BSNT_04426___ 251 GTAAAGAAATCGGGCTGTTTCAATTGATTGGAATGACGAAGCATAAAATT 300
|.|||||||||||..|.||.|||||.||.||.||||.||||||.|||||.
BL00208___bce 251 GCAAAGAAATCGGTTTATTCCAATTAATCGGCATGAGGAAGCAAAAAATC 300
BSNT_04426___ 301 TTTAGCATCTTAAG--TGCAGAAAATGTCATGCTGTATTTCGGTTCATTA 348
||..|||||||||| || |||||||||||||||||||||||.||.||.
BL00208___bce 301 TTCCGCATCTTAAGCTTG--GAAAATGTCATGCTGTATTTCGGCTCTTTG 348
BSNT_04426___ 349 GCGATCGGGGTAGCGGCCGGGTTTTCGATATCGAAGCTTGTCTTGATGAT 398
|..||.|||||....||||||||||||||.||.|||||.||..|.|||||
BL00208___bce 349 GTCATTGGGGTGTTTGCCGGGTTTTCGATCTCAAAGCTCGTGCTCATGAT 398
BSNT_04426___ 399 TCTGTTCAAAATTGTCGATGTCAAAGCGGATGCGAAACTGCATTTTTCTG 448
|.||||.||||||||.|||||..||||.||.||.|||.||.|||||||.|
BL00208___bce 399 TTTGTTTAAAATTGTAGATGTTCAAGCCGAAGCCAAATTGAATTTTTCCG 448
BSNT_04426___ 449 ----AGCAGGCTTTGGTCCAAACGGTCATTGTGTTCTGCGGCATTTACCT 494
||| |||| ||.|||||.||||||||.|||||||||||.|||||
BL00208___bce 449 TCGAAGC--GCTT--GTGCAAACCGTCATTGTATTCTGCGGCATCTACCT 494
BSNT_04426___ 495 TTTGATCATGATCATGAATTATACGTTTATCAAAAAACAGAGTATTTTAT 544
|.|..|.|||.|.|||||||||.|||||||||||||.|||||.|||||||
BL00208___bce 495 TCTCGTAATGGTGATGAATTATGCGTTTATCAAAAAGCAGAGCATTTTAT 544
BSNT_04426___ 545 CTTTGTTTAAAGTAACGTCCTCCACTGAAGACAAAGTGAAGAAAATATCA 594
||||.||||||||.||.||..|.||.||.||.||.||.||||.||||||.
BL00208___bce 545 CTTTATTTAAAGTGACATCAGCTACGGAGGATAAGGTAAAGAGAATATCC 594
BSNT_04426___ 595 TTTTTCCAAATGCTGATCGGCGCTTTAGGCATCGTGTTGATTTTGACAGG 644
.|||||||||||.|.||||||...||.||||||.||||.|||||..|.||
BL00208___bce 595 GTTTTCCAAATGATCATCGGCTTATTGGGCATCTTGTTTATTTTATCCGG 644
BSNT_04426___ 645 ATACTATGTGTCTTCTGAGCTGTTTGGCGGAAAATTTAAGACCATTAATG 694
|||||||||.||..|||||||.||..||||||||||.||||||.|..|||
BL00208___bce 645 ATACTATGTATCCACTGAGCTTTTCAGCGGAAAATTCAAGACCGTAGATG 694
BSNT_04426___ 695 AACTGTTTGTTGCGATGAGCTTCATTCTGGGGAGCGTCATTATCGGGACG 744
|.||||||..||||||||||||.|||||.||.|.||||||.|||||.|||
BL00208___bce 695 AGCTGTTTTATGCGATGAGCTTTATTCTCGGAACCGTCATCATCGGAACG 744
BSNT_04426___ 745 TTTTTGTTTTATAAAGGATCAGTTACGTTTATCTCGAATATCATTCGAAA 794
|...|.||.|||||||||||.||.|..|||.||||.||.|||||.||.||
BL00208___bce 745 TACCTCTTCTATAAAGGATCGGTCAGCTTTGTCTCCAACATCATCCGCAA 794
BSNT_04426___ 795 AAGCAAGGGCGGCTACTTAAATATTTCTGAGGTCCTGTCACTGTCATCAA 844
||||||.||.||||||||.|||||||.|||.||.|||||.||.|||||.|
BL00208___bce 795 AAGCAAAGGAGGCTACTTGAATATTTATGAAGTGCTGTCCCTTTCATCGA 844
BSNT_04426___ 845 TCATGTTCAGAATGAAATCGAATGCGCTGCTGCTGACGATTATTACAACC 894
||||||||.|.||||||||.||.||.||..|..|.||.||.|||||.|||
BL00208___bce 845 TCATGTTCCGGATGAAATCAAACGCCCTATTATTAACAATCATTACCACC 894
BSNT_04426___ 895 GTTTCAGCACTTGCGATCGGGCTGTTATCTCTTGCA--TATATCTCGTAT 942
|||||.||.||.||||||||..||||||| |||| | |||||.|||||.
BL00208___bce 895 GTTTCGGCGCTGGCGATCGGATTGTTATC-CTTG-AGCTATATTTCGTAC 942
BSNT_04426___ 943 TACTCGTCAGAAAAGACCGCTGAACAAAATGTAGCGGCTGATTTTTCATT 992
||.||..||||.||.|||||.||||||||.||.|||||||||||..|
BL00208___bce 943 TATTCTGCAGAGAAAACCGCCGAACAAAACGTGGCGGCTGATTTCGC--- 989
BSNT_04426___ 993 CATG---AATGAGAAAGATGCCAAGTTATTTGAA-AACAGATTGAGG--G 1036
|||| |||.|.||.|||||.|||...|||||| ||| ||..|| |
BL00208___bce 990 CATGACAAATCAAAAGGATGCAAAGCGTTTTGAACAAC---TTTTGGACG 1036
BSNT_04426___ 1037 AAAGCAACATCTCGTTTGTA----AAAAAGGCAACACCTGTCCTGCAAGC 1082
|||..||||| ||..|| |||||.|.||..|.||||.|.|||||
BL00208___bce 1037 AAAATAACAT----TTCCTACAGCAAAAAAGAAATTCATGTCATTCAAGC 1082
BSNT_04426___ 1083 AAATGTTGACATTGCAAATATTATGGATGGAACTCC-GAAAGAGATGCAG 1131
...|.||.|..|.|.|.|.|||.|.||||||..||| |||| |.|||...
BL00208___bce 1083 GGTTTTTAATCTGGAACAAATTGTCGATGGAGATCCTGAAA-ATATGGCT 1131
BSNT_04426___ 1132 GGCGATCCCAGCAATATGCAGCTTGCTGTTGTTAGCGA--CAAAGAT--- 1176
||.||.||..|.||..|||..||.||.||.||.||||| ||.||||
BL00208___bce 1132 GGAGACCCGGGGAAATTGCCCCTCGCCGTGGTCAGCGATGCAGAGATTGC 1181
BSNT_04426___ 1177 -GTAAAAGGAGTCGATGTGGCGGCTGGAGAAGCCGTTTTCTCAGGATACA 1225
| ||| |.||.|||.|....|||||.|.|.||||.||||||||.|
BL00208___bce 1182 CG-----GGA-TGGACGTGCCAAAAGGAGACGTCATTTTTTCAGGATATA 1225
BSNT_04426___ 1226 CCGACTTGCTGCAAAAAATAATGGTTTTCAAGGACTCTGGTGTTATTAAA 1275
|||||.|.||.||.|||.|.||||.|||.||.||..|.||||...||||.
BL00208___bce 1226 CCGACCTTCTCCAGAAATTTATGGCTTTAAAAGAGACCGGTGCCGTTAAG 1275
BSNT_04426___ 1276 ATAAAAAGCAAACATGAGACGCAGCCATTAAAATATAAAGGATTAAGAGA 1325
.||||.||||..||||||||....||||||||.|||..|||.||.|.|.|
BL00208___bce 1276 GTAAAGAGCAGGCATGAGACAATCCCATTAAACTATTTAGGCTTGAAAAA 1325
BSNT_04426___ 1326 AGAGTTTCTTGTATCCTACACGTTTACAAGCGGGGGCATGCCCGCTGTCA 1375
|||||.||||.||||||.||..|||||.|||||.||..||||.|.||.|.
BL00208___bce 1326 AGAGTCTCTTTTATCCTTCAACTTTACCAGCGGCGGATTGCCTGTTGCCG 1375
BSNT_04426___ 1376 TTGTGGATGACAGC-CTGTTTAAACAGCT------GGACAAGGAT--AAG 1416
||||.||||| .|| ||||||||||..|| .|||||.||| ||
BL00208___bce 1376 TTGTAGATGA-TGCGCTGTTTAAACGTCTTAGCCAAGACAAAGATCCAA- 1423
BSNT_04426___ 1417 GACCCCCGCATTCAGCTGGCGCA-------ATCTACATTTAT-CGGCGTC 1458
|||||..||| |.| |.|||.| |||..||
BL00208___bce 1424 -------------AGCTGCAGCAGAAGCCGAGC--CTTTTTTACGGAATC 1458
BSNT_04426___ 1459 AATGTGAAACATGACGATCAAATGGAAAAAGCAAATGAGCT-TTTTCAAC 1507
|||.|.||||||||.|||||..|..|..|.||||||||||| |||.||||
BL00208___bce 1459 AATTTAAAACATGAAGATCAGCTTCAGCAGGCAAATGAGCTGTTTGCAAC 1508
BSNT_04426___ 1508 AGGTGAA-CAAGAAAAACG---AGCATTTATCAAGACTGGATACAAGCGC 1553
| ||||| | |||||| ||||||||||....||.|||.|||||.|
BL00208___bce 1509 A-GTGAATC----AAAACGATCAGCATTTATCGCTCCTTGATGCAAGCAC 1553
BSNT_04426___ 1554 TGCGCAAAAATCACTGTTTGGTATGGTGATGTTCATCGTCGGCTTCTTAG 1603
.||.||||||||.||.||.||..|.|..|||||.||.||.|||||.||||
BL00208___bce 1554 AGCTCAAAAATCGCTTTTCGGCCTTGCCATGTTTATTGTAGGCTTTTTAG 1603
BSNT_04426___ 1604 GGTTAACGTTCCTGATTACATCAGGTTGTATCCTTTATTTTAAACAAATG 1653
|..|||||||.|||||.||.|||||.||.|||||.|||||||||||||||
BL00208___bce 1604 GACTAACGTTTCTGATCACTTCAGGATGCATCCTATATTTTAAACAAATG 1653
BSNT_04426___ 1654 GGTGAAAGTGAAGATGAAAAACCGAGCTATACGATTTTAAGAAAACTCGG 1703
|..|||||.||||||||.|||||||..||.||||||||.|||||||||||
BL00208___bce 1654 GACGAAAGCGAAGATGAGAAACCGAATTACACGATTTTGAGAAAACTCGG 1703
BSNT_04426___ 1704 TTTTACGCAGGGCGACCTGATAAAGGGGATACGCATCAAACAAATGTACA 1753
|||.||.|.|..|||.|||.|.|||||||||||.|||||||||||.||||
BL00208___bce 1704 TTTCACACGGAACGATCTGTTGAAGGGGATACGAATCAAACAAATCTACA 1753
BSNT_04426___ 1754 ACTTCGGCATTCCGCTCGTTGTCGGCCTCTTCCACAGTTACTTTGCCGTC 1803
|||||||||||||..|.|||.|||||||.|..|||||.|||||.||||||
BL00208___bce 1754 ACTTCGGCATTCCATTAGTTATCGGCCTGTCTCACAGCTACTTCGCCGTC 1803
BSNT_04426___ 1804 CAATCCGGCTGGTTCTTATTCGGATCAGAGGTATGGGCGCCCATGATTAT 1853
||.||||||||||||.|||||||..|||||.|.|||.||||.|||||.||
BL00208___bce 1804 CAGTCCGGCTGGTTCCTATTCGGGGCAGAGCTGTGGACGCCGATGATCAT 1853
BSNT_04426___ 1854 GGTGATGGTGTTATATACTGCGCTCTACTCCATTTTTGGTTTTCTGTCAG 1903
.|||||||||.|.||.||.|..||.|||||.|||||.||.||.||.||.|
BL00208___bce 1854 CGTGATGGTGCTGTACACCGTCCTGTACTCTATTTTCGGCTTGCTTTCCG 1903
BSNT_04426___ 1904 TTCTTTATTATAAGAAGGTCATTAAATCGTCGTTGTGA- 1941
|||||||....|||||.||.||.||.|||.||.||| |
BL00208___bce 1904 TTCTTTACGGCAAGAAAGTGATCAAGTCGGCGCTGT-AG 1941
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