Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04429 and BL00211

See Amino acid alignment / Visit BSNT_04429 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:37
# Commandline: needle
#    -asequence dna-align/BSNT_04429___ytsA.1.5803.seq
#    -bsequence dna-align/BL00211___bceR.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04429___ytsA-BL00211___bceR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04429___ytsA-BL00211___bceR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04429___ytsA
# 2: BL00211___bceR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 713
# Identity:     560/713 (78.5%)
# Similarity:   560/713 (78.5%)
# Gaps:          43/713 ( 6.0%)
# Score: 2245.5
# 
#
#=======================================

BSNT_04429___      1 TTGTTTAAACTTTTGCTGATTGAAGATGATGAATCGCTGTTTCATGAAAT     50
                     .||||||||||..||.||||.|||||||||||||||||||||||.|||||
BL00211___bce      1 ATGTTTAAACTGCTGTTGATAGAAGATGATGAATCGCTGTTTCAAGAAAT     50

BSNT_04429___     51 CAAGGATCGTTTAACGGGATGGTCCTATGATGTATACGGCATTCAGGATT    100
                     .||.||.||.|||||.||.|||||.||.||.|||||||||||..|.||||
BL00211___bce     51 AAAAGAGCGGTTAACCGGGTGGTCATACGAGGTATACGGCATCAACGATT    100

BSNT_04429___    101 TCAGTCAGGTGCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATT    150
                     ||||..|.|||.|||||||.|||||||||.||||.||.||.||.|||||.
BL00211___bce    101 TCAGCGAAGTGATGCAGGAGTTTGCGGCGATTAAGCCAGACTGCGTCATC    150

BSNT_04429___    151 ATTGATGTACAGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCAGAT    200
                     ||.|||.|.|||||||||||||.||||||.||||||||||||||||||||
BL00211___bce    151 ATCGATATTCAGCTGCCTAAATATGACGGGTTTCATTGGTGCCGGCAGAT    200

BSNT_04429___    201 CCGCTCCCGGTCAAATGTTCCGATTCTCTTTTTATCCTCCCGGGATCATC    250
                     |||||||||.||.||.||||||||||||||||||||.||.||.|||||||
BL00211___bce    201 CCGCTCCCGTTCCAACGTTCCGATTCTCTTTTTATCTTCGCGCGATCATC    250

BSNT_04429___    251 CTGCTGATATGGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATCCAA    300
                     |||||||||||||.||||||||||||.||||.||.|||||.|.|||.||.
BL00211___bce    251 CTGCTGATATGGTCATGTCCATGCAGTTCGGAGCGGATGATTATATTCAG    300

BSNT_04429___    301 AAGCCATTTCATTTTGATGTGCTGATCGCGAAAATCCAAGCGATGTTCCG    350
                     |||||.|||||||||||.||||||||.||.||.|||||.|||||.|||||
BL00211___bce    301 AAGCCGTTTCATTTTGACGTGCTGATTGCCAAGATCCAGGCGATTTTCCG    350

BSNT_04429___    351 GCGTGTGCACCATTATAATACGGAGCC-GAATACGATT------AAAACG    393
                     .||.||..||.|.||||||||.||||| ||    ||||      ||||||
BL00211___bce    351 TCGCGTCTACGACTATAATACAGAGCCTGA----GATTCTTAAAAAAACG    396

BSNT_04429___    394 TGGTGCGGCGCTGCTGTAGACGCGGAGCAGAACCTCGTCAGCAATGACAA    443
                     ||||||||.||..|.||.||..|.||.||.||||.||||||||||    |
BL00211___bce    397 TGGTGCGGTGCAACCGTTGATCCCGAACAAAACCGCGTCAGCAAT----A    442

BSNT_04429___    444 AG--------GATCTGTTGAACTGACCAAAAATGAAATGTTCATTCTAAA    485
                     ||        ||||    ||||||||.|..|||||||||||||||.||||
BL00211___bce    443 AGGCGGGGGCGATC----GAACTGACAAGGAATGAAATGTTCATTTTAAA    488

BSNT_04429___    486 ACAATTAATAGAGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGATCA    535
                     ||||||.||.||.|||||||||||.||.||||||.|||||||..||||.|
BL00211___bce    489 ACAATTGATCGACCAAAAAAACAAAATTGTCAGCAGGGAAGAATTGATGA    538

BSNT_04429___    536 GAAGCTTGTGGAACGATGAGCGTTTTGTTAGTGATAATACGCTGACCGTC    585
                     |||||.|.|||||||||||.||.|||||.||.|||||.||||||||.|||
BL00211___bce    539 GAAGCCTATGGAACGATGAACGCTTTGTCAGCGATAACACGCTGACAGTC    588

BSNT_04429___    586 AATGTCAATCGCCTGCGAAAAAAACTGGACGCCCTGCAGCTTGGCGC-AT    634
                     ||.||.||.|||.|..||||||||||.||.|||.|| |.|||||.|| ||
BL00211___bce    589 AACGTAAACCGCTTAAGAAAAAAACTCGATGCCTTG-AACTTGGGGCAAT    637

BSNT_04429___    635 ATATCGAGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAG-AGGACAA    683
                     ||||||||||.|||||.|||||||||||.||.|||||.|||| |||    
BL00211___bce    638 ATATCGAGACGAAGGTCGGCCAGGGCTATATGGCGAAAGAAGAAGG----    683

BSNT_04429___    684 GTTCTATGATTAA    696
                          ||||    
BL00211___bce    684 -----ATGA----    687


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