Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_06038 and BL00219
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_06038___yxiA.1.5803.seq
# -bsequence dna-align/BL00219___yxiA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_06038___yxiA-BL00219___yxiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_06038___yxiA-BL00219___yxiA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06038___yxiA
# 2: BL00219___yxiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1461
# Identity: 1019/1461 (69.7%)
# Similarity: 1019/1461 (69.7%)
# Gaps: 120/1461 ( 8.2%)
# Score: 3546.0
#
#
#=======================================
BSNT_06038___ 1 -----------------------------------ATGGC-CTTCACCCT 14
||.|| .||||.|.|
BL00219___yxi 1 ATGAATATGAGAAAGTGTTTCATCCAAGTCCTTGCATTGCTTTTCATCAT 50
BSNT_06038___ 15 ---------------CCCAAACTACGTCTATGCA------CAAAAACCTA 43
.||||||.|.|.||.|||| |||||||||.
BL00219___yxi 51 TGCTGCATGTTTCGCGCCAAACCAAGCCTCTGCACAAACTCAAAAACCTG 100
BSNT_06038___ 44 TATTTAAAGAAGTCAGCGTCCATGACCCTTCCATCATTGAAACAAACGGC 93
|.|||..||||||.|..||.|||||.||.||.||.|||.||.|.||.|||
BL00219___yxi 101 TTTTTTCAGAAGTGACGGTACATGATCCATCGATTATTAAAGCGAATGGC 150
BSNT_06038___ 94 ACCTTTTATGTTTTTGGATCTCATCTCGCTTCCGCAAAAACAAATGACCT 143
||.|..|||||.||.||.||.|||.|.|||||.||.|||.|.|..|||||
BL00219___yxi 151 ACGTACTATGTCTTCGGCTCCCATTTAGCTTCGGCCAAATCGACGGACCT 200
BSNT_06038___ 144 CATGCAATGGCAGCAGCTGACCAACAGCGTAAGCAACGACAACCCACTTA 193
.|||.|.|||..|||..|..||...||.||...|.|||.|||.||.||.|
BL00219___yxi 201 GATGAATTGGACGCAAATTTCCTCGAGTGTCCACGACGGCAATCCTCTGA 250
BSNT_06038___ 194 TCCCGAATGTCTATAAAGAATTAAAAGAAACCTTCGAATGGGCGCAATCC 243
|.|||||.||||||.|||||||||||||||||||.||||||||..||||.
BL00219___yxi 251 TTCCGAACGTCTATGAAGAATTAAAAGAAACCTTTGAATGGGCTGAATCT 300
BSNT_06038___ 244 GATACTCTTTGGGCGGCTGACGTCACGCAGCTGGCGGACGGCAAATACTA 293
|||||..|.|||||..||||.|||||.|||||.|.|||||||||.|..||
BL00219___yxi 301 GATACGTTGTGGGCACCTGATGTCACCCAGCTTGAGGACGGCAAGTTTTA 350
BSNT_06038___ 294 CATGTACTACAACGCCTGCCGCGGCGACTCGCCTAGGTCCGCCATGGGTG 343
.|||||.|||||||||||||||||.||.||.||.||.||||||.|.||..
BL00219___yxi 351 TATGTATTACAACGCCTGCCGCGGGGATTCTCCGAGATCCGCCCTCGGGC 400
BSNT_06038___ 344 TTGCCGTCGCTGACAACATCGAAGGGCCATACAAAAACAAAGGCATCTTT 393
||||.|||||.|||.||||.|||||.|||||||||||.||||||||.|||
BL00219___yxi 401 TTGCTGTCGCAGACGACATTGAAGGTCCATACAAAAATAAAGGCATTTTT 450
BSNT_06038___ 394 TTGAAATCAGGAATGGAAGGCACAAGCAACGATGGAACACCGTATGACGC 443
.||||.||.||||||||.||.|..|||||.||.||.||.||.||||||||
BL00219___yxi 451 CTGAAGTCGGGAATGGATGGGATCAGCAATGACGGGACGCCTTATGACGC 500
BSNT_06038___ 444 AACAAAACATCCGAATGTCGTCGACCCGCATACCTTCTTTGATAAAGACG 493
.|||||.||.||.|||||||||||.||.||.||.|||||||||.||.|||
BL00219___yxi 501 GACAAAGCACCCAAATGTCGTCGATCCCCACACATTCTTTGATCAAAACG 550
BSNT_06038___ 494 GCAAGCTGTGGATGGTGTATGGATCATACTCAGGCGGCATTTTCATACTT 543
|.|||||||||||||||||.||.||.||.||.|||||.|||||.||..|.
BL00219___yxi 551 GAAAGCTGTGGATGGTGTACGGCTCCTATTCCGGCGGAATTTTTATTTTA 600
BSNT_06038___ 544 GAAATGAATCCGAAAACGGGCTTCCCGCTTCCTGGACAGGGATACGGGAA 593
||||||.|...||||||.||.||.||||||||.||||||||||||||.||
BL00219___yxi 601 GAAATGGACAAGAAAACCGGATTTCCGCTTCCGGGACAGGGATACGGCAA 650
BSNT_06038___ 594 AAAACTGCTTGGCGGCAACCATAGCAGAATCGAAGGCCCGTATGTTCTCT 643
|||.|||.|.|||||||||||.|||.|.||.||||||.|.|||.||||||
BL00219___yxi 651 AAAGCTGATCGGCGGCAACCACAGCCGTATTGAAGGCGCATATATTCTCT 700
BSNT_06038___ 644 ACAATCCAGACACCCAATACTACTACTTATACCTATCATATGGCGGTCTT 693
||.||||.||.||.||.||.||||||.|.|||.|.||.|..||.||.|||
BL00219___yxi 701 ACCATCCTGAAACACAGTATTACTACCTGTACATGTCCTTCGGGGGGCTT 750
BSNT_06038___ 694 GATGC-AACAGGCGGCTATAACATCCGTGTGGCCCGCTCCAAGAAACCAG 742
|..|| .|| |||||.||.|||||.||.||.|||||||||||.||.||.|
BL00219___yxi 751 GCCGCTGAC-GGCGGGTACAACATTCGCGTCGCCCGCTCCAAAAACCCTG 799
BSNT_06038___ 743 ACGGCCCTTATTATGATGCAGAAGGCAATCCAATGCTTGATGTCCGCGGC 792
||||||||||||||||||||||||||.|..|.|||.||||.|||||||||
BL00219___yxi 800 ACGGCCCTTATTATGATGCAGAAGGCCACGCGATGATTGACGTCCGCGGC 849
BSNT_06038___ 793 AAAGAAGGCACATTCTTCGACGACCGTTCCATCGAATCATACGGCGTCAA 842
||||||||.||..|.||.|||||.|||||.||||||.|.|||||||||||
BL00219___yxi 850 AAAGAAGGAACGCTTTTTGACGATCGTTCAATCGAACCGTACGGCGTCAA 899
BSNT_06038___ 843 ACTCATGGGCAGCTACACTTTTGAAACAGAAAATGAAAAAGGCACCGGGT 892
|||.|||||.|..|.|.|.||| ||| |||.|||| |||.|
BL00219___yxi 900 ACTGATGGGAAATTTCTCATTT--AAC----AATAAAAA------CGGCT 937
BSNT_06038___ 893 ACGTCTCACCAGGCCACAACTCCGCATACTATGACGAAAAAACCGGGCGT 942
|.||.||.||.|||||.|||||.||.|..||.||.|||||||.|||....
BL00219___yxi 938 ATGTGTCGCCGGGCCATAACTCTGCCTTTTACGATGAAAAAAGCGGTAAA 987
BSNT_06038___ 943 TCCTATTTAATCTTCCACACCCGCTTCCCGGGCAGGGGTGAGGAACACGA 992
||.|||||||||||||||||||||||||||||..||||.|||||.|||||
BL00219___yxi 988 TCATATTTAATCTTCCACACCCGCTTCCCGGGACGGGGCGAGGAGCACGA 1037
BSNT_06038___ 993 AGTCAGAGTCCACCAATTGTTCATGAATAAAGACGGCTGGCCGGTAGCAG 1042
||||.|.||||||||||||.|.|||||.|||.|.|||||||||||.|..|
BL00219___yxi 1038 AGTCCGCGTCCACCAATTGCTGATGAACAAACAAGGCTGGCCGGTTGTCG 1087
BSNT_06038___ 1043 CGCCATATCGTTACGCAGGTGA-AACACTGAAAGAAGTAAAACAAAAAGA 1091
|.||..|.||.||.||.||.|| ||...||||| |.|| .||||||.
BL00219___yxi 1088 CCCCTCACCGCTATGCCGGAGAGAAGCTTGAAA-AGGT----GAAAAAGT 1132
BSNT_06038___ 1092 CA----TCACAGGAACATACAAACTCATCCAGCACGGAAAAGACATCTCA 1137
|| |.|..||....|||.||.|..|...||||||.|||||||||||.
BL00219___yxi 1133 CAGATGTGATTGGCGATTACGAATTGGTGAGGCACGGCAAAGACATCTCC 1182
BSNT_06038___ 1138 GCCGACATCAAAAAAACCATCAACATCCAGC-----TCAACA----AAAA 1178
||.||.||.|||.||.|.|...|.|||| || ||||.| ||||
BL00219___yxi 1183 GCAGATATTAAAGAATCGAAAGAAATCC-GCTTGAATCAAAATGGCAAAA 1231
BSNT_06038___ 1179 CCACACCATTTCCGGGGAAATGACCGGAACATGGCAGAAAACCGGAAAAA 1228
..||| ||.|.|.|..|||||||.|||.||||.||.||..|.|
BL00219___yxi 1232 TAACA--------GGCGCAGTAGCCGGAACGTGGAAGAACACGGGGCATA 1273
BSNT_06038___ 1229 ACACAGCCGACATCACGTTAGCGGGCAAGACGTATAACGGGGTATTTTTA 1278
|||.|...||..|||.|.|.|..||.||.||.||..|.||.||.|||||.
BL00219___yxi 1274 ACAAAATAGAACTCAAGATCGACGGAAAAACCTACGATGGCGTGTTTTTG 1323
BSNT_06038___ 1279 CGCCAGTGGGATTCGG----TGAGAGAGAAGAACGTCATGACGTTTAGTG 1324
||.|||||||||.||| ||||.| .||.||.|||||||||||||
BL00219___yxi 1324 CGTCAGTGGGATGCGGCTTCTGAGCG----TAAGGTGATGACGTTTAGTG 1369
BSNT_06038___ 1325 TGTTGAAT-GGCAGCGGTGAGGCTGTTTGGGGTAGTAAGCTTAAAA---- 1369
.||||..| |..|| ||.||.||.||||||||.||| ||.||||||
BL00219___yxi 1370 CGTTGTCTCGTGAG-GGAGATGCGGTTTGGGGGAGT-AGTTTAAAAAGAG 1417
BSNT_06038___ 1370 --GA----TAA 1374
|| |||
BL00219___yxi 1418 CGGAATTTTAA 1428
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