Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01391 and BL00255

See Amino acid alignment / Visit BSNT_01391 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:55
# Commandline: needle
#    -asequence dna-align/BSNT_01391___yfiQ.1.5803.seq
#    -bsequence dna-align/BL00255___yfiQ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01391___yfiQ-BL00255___yfiQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01391___yfiQ-BL00255___yfiQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01391___yfiQ
# 2: BL00255___yfiQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1161
# Identity:     783/1161 (67.4%)
# Similarity:   783/1161 (67.4%)
# Gaps:         144/1161 (12.4%)
# Score: 2508.0
# 
#
#=======================================

BSNT_01391___      1 ATGCAAATTAAAGAAATTTTTATGATCCGCTGCGTTTCGTGCTTAAGTGT     50
                     .|||||.|.||||||||||||.|.||.||||||.|.||.||.|||||.||
BL00255___yfi      1 TTGCAAGTAAAAGAAATTTTTGTCATTCGCTGCATCTCCTGTTTAAGCGT     50

BSNT_01391___     51 CGTCTTGCTCCATATCATTTCAATGGTCCTGATGCTTCAGGC--AGAAGC     98
                     .||.|||||.|||...||.||||||||.||.|||.|.|.|||  |.|.||
BL00255___yfi     51 TGTTTTGCTTCATGCGATATCAATGGTGCTCATGGTGCGGGCGGACATGC    100

BSNT_01391___     99 TCTTGCAGAT----ATTTCTCACAC----TGTTGATTCTTTCCGCACACT    140
                     ||  |.||||    .||||     |    ||||||.||||||.|.||.||
BL00255___yfi    101 TC--GGAGATGCGGTTTTC-----CGGGTTGTTGAATCTTTCAGAACGCT    143

BSNT_01391___    141 CCTGATGTTCAGCACGCCCGCTTTTATTTTCATCTCTGAATTTTTACTGG    190
                     ||||||||||||.|||||.||.|||||||||||.||.||||||||.||.|
BL00255___yfi    144 CCTGATGTTCAGTACGCCGGCGTTTATTTTCATTTCCGAATTTTTGCTCG    193

BSNT_01391___    191 CCCGTTCTTATCCTGATGGGGTGCCTGACGGTTTTTTAAAGAAGCGGGGA    240
                     |.|.|.|.|||||||.|||.||.||.||.||.||||||||.||||||...
BL00255___yfi    194 CGCATGCCTATCCTGGTGGTGTTCCGGAAGGGTTTTTAAAAAAGCGGTTT    243

BSNT_01391___    241 AAAGTGATTTTTGTTCCTTTTTTATTTATCGCGGCCATCGATG-------    283
                     |||...|||||..|.||||||.||||||||||.|...|.||||       
BL00255___yfi    244 AAAACAATTTTCATCCCTTTTCTATTTATCGCTGTTTTGGATGCTTTTAT    293

BSNT_01391___    284 ---CGCTG--CTGATGACCAGTGCGATGGGGGGAGAGGTAACCTTTC---    325
                        |||.|  |||||||    |||            .|.||  ||||   
BL00255___yfi    294 GACCGCAGGTCTGATGA----TGC------------AGCAA--TTTCATG    325

BSNT_01391___    326 --TCGCGT--TTGTGCAAAAA-TATCTGGCGAACGTATTCTTAGGAAACT    370
                       ||| ||  ||.|..||||| |.| |||||||..|||||||.||.||.|
BL00255___yfi    326 CATCG-GTCATTATTAAAAAACTGT-TGGCGAATATATTCTTGGGGAATT    373

BSNT_01391___    371 TTATCGGATACTTCATTCTCGTCATCTTTCAATTTTACATGCTGCATATG    420
                     |.|||||.|||||||||||||||||.||||||||||||.|||||||.|||
BL00255___yfi    374 TCATCGGTTACTTCATTCTCGTCATTTTTCAATTTTACTTGCTGCACATG    423

BSNT_01391___    421 ATG-TTTCATGAGTACTTGAAAAAAGCATCGCCGAAATGGGTGCTGTCTA    469
                      || ||.|||...|..|||.||||.||.|||||.|||||||||||.||.|
BL00255___yfi    424 -TGCTTCCATTCATTTTTGCAAAAGGCTTCGCCTAAATGGGTGCTTTCGA    472

BSNT_01391___    470 TCTCATTTGTGGTGACAGCCGCTTATTTAGGCTATTTCTCCG--CAGCCA    517
                     |.||.||||.|||.|||||.||||||||..|||||||| .||  ||..||
BL00255___yfi    473 TTTCTTTTGCGGTCACAGCGGCTTATTTGAGCTATTTC-ACGTTCATTCA    521

BSNT_01391___    518 GCCCGGCTCCTGCTTC--TGAAGAGGGCGGGGCATTTCCGTTCTTC-TGG    564
                     .|    ||||.|  ||  |.|.||||..|.|.|.||||| ||.||| |||
BL00255___yfi    522 AC----CTCCGG--TCGTTCAGGAGGAGGCGCCGTTTCC-TTTTTCGTGG    564

BSNT_01391___    565 GTTCCGTTCGCAGGCTGGCTTTTCTACTTTTGTCTAGCCTACTATTGCGG    614
                     ||.|||||..|.||||||||.||.|||||||||.|.|||||.||||||||
BL00255___yfi    565 GTGCCGTTTCCCGGCTGGCTCTTTTACTTTTGTTTGGCCTATTATTGCGG    614

BSNT_01391___    615 AAAAGAA-TACAAGCGTTTTTTAGCGCTGCTGAACCAATACCGCTGGGTG    663
                      .||||| |||.||||.|||||.||..|||||.|.|..|||.|....|.|
BL00255___yfi    615 -CAAGAATTACGAGCGCTTTTTGGCATTGCTGGAACGGTACAGGCATGCG    663

BSNT_01391___    664 GTGTA--CGGCGCCGCAATTGCTTCTGGGGC--GCTG----GTTGTCACT    705
                     |||||  |||||        |||.|||.|.|  |.||    .||||..|.
BL00255___yfi    664 GTGTATGCGGCG--------GCTGCTGTGACCGGATGTTTCATTGTAGCG    705

BSNT_01391___    706 GTTTCTTATGTCGG---TGAAATCGGCATGA--TCAGCTCGAAGCGGCCT    750
                     |||||.||..||||   .||.||||...|||  |||     |||||.||.
BL00255___yfi    706 GTTTCCTACTTCGGCCAAGACATCGCGGTGACGTCA-----AAGCGTCCG    750

BSNT_01391___    751 GATATCATGCTGTATTCAACAAGCATGATTTTCCTGTGTTTTCACTTGTT    800
                     ||||||.||||.|||||.||||||||.||||||.|.||.||.|||.||||
BL00255___yfi    751 GATATCCTGCTTTATTCGACAAGCATCATTTTCTTATGCTTCCACCTGTT    800

BSNT_01391___    801 TTCCAAAATGAAGCATGTGCCGAAAATCATGATGTTTATCAGCAACTATT    850
                     |||.|||.|||||...||.|||||..|.||.|||.|.|||||||||||||
BL00255___yfi    801 TTCAAAACTGAAGTCGGTACCGAAGCTGATTATGATGATCAGCAACTATT    850

BSNT_01391___    851 CCTTTTCGATTTATCTGCTTCATGCCTATTTTA---TGATTATAGGCTAC    897
                     |.|||||.||||||.|.||.||.||   |||||   |||||      |.|
BL00255___yfi    851 CTTTTTCTATTTATTTACTGCACGC---TTTTATCCTGATT------TTC    891

BSNT_01391___    898 GTGTTG-----CTT--------TTGA----ATATGCCCGAAATTCCTGCC    930
                     |.||||     |||        ||||    ||..|           |.|.
BL00255___yfi    892 GGGTTGGTCATCTTAACCGCCCTTGACAGCATCGG-----------TACG    930

BSNT_01391___    931 GTACCGGCTGTTCTCCTGCTGTTTGCCGTGTGTACAGCCGGCCCGATTCT    980
                     |||.||||||||.|.||..|||||..|.|.|.|||||.||...||.||.|
BL00255___yfi    931 GTATCGGCTGTTTTGCTTTTGTTTTTCATTTCTACAGGCGCTGCGGTTTT    980

BSNT_01391___    981 GACCTCGTGGGCACTGAATAAATTCAAATACGGGTATTTATTTGTGGGGA   1030
                     .|..||.|||||..|.||||||||.||.|||||.|||.|.|||||.||.|
BL00255___yfi    981 CATATCCTGGGCCGTCAATAAATTGAAGTACGGCTATATGTTTGTCGGAA   1030

BSNT_01391___   1031 AAATTTATCAGCC--AAAACAGAAGAAGGTAACAGTCGAAGTGCGTGATC   1078
                     ||||||||..|||  ||||.||..|||.|.|.||  ..|||||||..|||
BL00255___yfi   1031 AAATTTATGTGCCGAAAAAGAGGCGAATGGAGCA--AAAAGTGCGCCATC   1078

BSNT_01391___   1079 ACGCAGGGTGA   1089
                     |.|||||.|.|
BL00255___yfi   1079 ATGCAGGTTAA   1089


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