Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05283 and BL00256

See Amino acid alignment / Visit BSNT_05283 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_05283___yvcS.1.5803.seq
#    -bsequence dna-align/BL00256.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05283___yvcS-BL00256.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05283___yvcS-BL00256.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05283___yvcS
# 2: BL00256
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2332
# Identity:    1117/2332 (47.9%)
# Similarity:  1117/2332 (47.9%)
# Gaps:         836/2332 (35.8%)
# Score: 1981.0
# 
#
#=======================================

BSNT_05283___      1 ATGAATTTGAGAACTATCGCCCG--------TAAAAA---CATTCTTGGG     39
                         ||    ||.||.|||.|.|        |||.||   |||||     
BL00256            1 ----AT----GACCTTTCGTCAGTTCGCGTTTAACAATGTCATTC-----     37

BSNT_05283___     40 AATCTGCAA-------CGGTATGTGGCCTACTTTTTAAGCTGTGTGTTTG     82
                          ||||       |.|||||..||.||.|||.|.|||.|..|||||.
BL00256           38 -----GCAACAAAAGGCTGTATGCCGCTTATTTTCTCAGCAGCATGTTTA     82

BSNT_05283___     83 CCGTTTCGGTGTTTTTTGTCTTCACATCATTT---ATTTTT------CAT    123
                     |.||...|||.|||||.|         |||||   ||||||      ||.
BL00256           83 CGGTGATGGTTTTTTTCG---------CATTTGCGATTTTTGCTTTCCAC    123

BSNT_05283___    124 CC--TGATG-TCAATGA-----AGACAATATATATGGC----GGAAGCCT    161
                     ||  ||||| .||.|||     .|||     .|..|||    ||.|||  
BL00256          124 CCGGTGATGACCAGTGATTCTTTGAC-----TTCCGGCATCGGGCAGC--    166

BSNT_05283___    162 TGTCAAAACATGCTTGAGC--GCAGCTCTTGTTGTCATCATTGTGTTTTG    209
                          |..|||.|||..||  ||.|.||  |..|.|..||||.| |||||
BL00256          167 -----ATGCATCCTTTGGCCTGCTGGTC--GCCGGCGGCATTAT-TTTTG    208

BSNT_05283___    210 TAT----ATTTTTCATCACATATTC----------CAATTCAGCGTTTTT    245
                     |.|    .||||||.|    |.|.|          .|.||||   |||.|
BL00256          209 TCTTCTCTTTTTTCTT----TGTGCTGTACTCGATGAGTTCA---TTTCT    251

BSNT_05283___    246 GCAGGCAAGAAAGAAAGAGTTTGGGCTGCTGACACTGTTT---GGCACAT    292
                     .||..|.|||||.||.||.||.||..|..|   |.||.||   ||.|..|
BL00256          252 TCAATCGAGAAAAAAGGAATTCGGCGTTTT---AATGATTCAAGGGATGT    298

BSNT_05283___    293 CAAAGCAGCAGCTTCGCAAGATG--ATTT------ATTATGAGCAGTCAC    334
                     |.|.||..||..||||||.||||  ||||      |.||||        |
BL00256          299 CGATGCGCCAAATTCGCATGATGGTATTTCTTGAAAATATG--------C    340

BSNT_05283___    335 TTATT---TCTCTTGCGGCGATTGCGGCCGGCATTG-GAGCAGGCCTGTT    380
                     |.|||   |.|.|||||.|.||  ||| |||.|||| |..|.|||..||.
BL00256          341 TGATTGGATTTTTTGCGACAAT--CGG-CGGGATTGTGCTCGGGCTCGTC    387

BSNT_05283___    381 ATTTTCAAA-----ACTGTT------------TTTTATGATTATGACATG    413
                     .|...||||     ||||.|            |.|..|||||||      
BL00256          388 TTCGCCAAATTGATACTGCTCACTGCGGAAAATGTCCTGATTAT------    431

BSNT_05283___    414 GATGCTCAGCGTGAAGGTGCCGATTTCGT---TTGCCATTG-TGCCGAAA    459
                       ||.|.|    .|||.|  ||||||  |   ||.||.||| ||.|||  
BL00256          432 --TGATAA----CAAGCT--CGATTT--TTACTTCCCGTTGATGGCGA--    469

BSNT_05283___    460 GCGTTTGTGATGACAATTGC------CGG------CTT-------TCTCA    490
                      .|.||||||.|...|||.|      |||      |||       |||..
BL00256          470 -TGATTGTGACGTTTATTTCTTTTAACGGTCTGTTCTTATTTATCTCTTT    518

BSNT_05283___    491 TCCTGTTTCAGACGCTGCTCATTTTATCACTGGGACGGATTCGGAAGCTG    540
                     ||.|||.|| |....||||||           |||..||    |||||||
BL00256          519 TCTTGTGTC-GTTTGTGCTCA-----------GGAGCGA----GAAGCTG    552

BSNT_05283___    541 GAAATCATTGAACTGATTAAATCGG----------CCAAA---AAGCCGA    577
                           ||||..||| |||||..||          |||||   .||||| 
BL00256          553 ------ATTGTTCTG-TTAAAAGGGAACAAAATCTCCAAAGGGGAGCCG-    594

BSNT_05283___    578 AAAG--TTTGCCGGTTTATTCGAAATGGCT--CACTGTATTGTCTTTGCT    623
                     ||||  |.||||             |.|||  |.|||    ||...||||
BL00256          595 AAAGCATCTGCC-------------TTGCTTACGCTG----GTTGCTGCT    627

BSNT_05283___    624 ATG--TCTTGGCAGTGGTTATTATCTATCTGCAACAGC-CAATGCCATTG    670
                     .||  .||||.|.|.||.||||           |||.| |..||  ||||
BL00256          628 GTGCTGCTTGCCGGAGGCTATT-----------ACACCGCTTTG--ATTG    664

BSNT_05283___    671 ACA---------------------TGATGTTTCGGGT-ATTTCCAATTTT    698
                     .||                     .||||.|.|.||| |          .
BL00256          665 TCAAAGAAGGAGGCGTTCTTGTGGCGATGGTGCCGGTGA----------C    704

BSNT_05283___    699 GATTTTAGT-GTTAGTTGGCACGTATTTCTTTTTTACACAAAGCAGTGTG    747
                     ||||.|.|| .||| |.|||||.|||.|..|.|||||.|  |||.|.|||
BL00256          705 GATTGTTGTCATTA-TCGGCACATATCTGCTGTTTACGC--AGCTGAGTG    751

BSNT_05283___    748 GCGTTTT------TCCGCATGCTGTACCGAAA-----GAAACACAGCTTC    786
                         |||      ||||||.|||    |.|||     |||||.|.|.|| 
BL00256          752 ----TTTATGTGATCCGCAGGCT----CAAAAAACGGGAAACCCTGTTT-    792

BSNT_05283___    787 TACAAAGGC-----ACGAATATCATTGTGCGTTCCAACATGAT-----AT    826
                          .|||     ||||||||.|||.||..|||     ||||     .|
BL00256          793 -----TGGCGGAAAACGAATATGATTTTGTTTTC-----TGATCTGTCTT    832

BSNT_05283___    827 TCAGGCTGAAGGATCATGCACGCATGCTGTTTTTAACCTCT----GTCAT    872
                     .||||.||||.||..||.|.||   |..||||||    |.|    |.|||
BL00256          833 ACAGGATGAAAGACAATTCGCG---GACGTTTTT----TATGGTGGCCAT    875

BSNT_05283___    873 TA---CAGCGGTCATATTAACAGCTACAGGTGTCAT-------CTATATG    912
                     ||   |..|.|||..|||  ||||       |.|||       ||.||  
BL00256          876 TATCTCTACTGTCGCATT--CAGC-------GCCATTGGGACGCTGTA--    914

BSNT_05283___    913 TTTTATTCCGATTTACAAAGGCAGGAGGAGCAAA--GCATTCCTCAGTCT    960
                             ||.|||.||||..|.||.|  .||||  |.|||         
BL00256          915 --------CGGTTTCCAAACTCTGGTG--ACAAACGGAATT---------    945

BSNT_05283___    961 GTTTCCTGGGTGGAAAAG-GATGCTTCCCG----CTTTCAGGTCAT-GAA   1004
                                   |||| |||| ..||||    |.|||   |||| .||
BL00256          946 --------------AAAGAGATG-AACCCGCATACGTTC---TCATATAA    977

BSNT_05283___   1005 GCCTGAGACGGCTGA-------GAATACATTGAAAAA-AGCTCAT-GCTG   1045
                     ||      ||.|.||       .||.||||.|||||| |   |.| |||.
BL00256          978 GC------CGCCGGAAACAAACAAACACATCGAAAAAGA---CGTGGCTT   1018

BSNT_05283___   1046 TTATCAAGTATAAGGTGGATGCCACAGGGAT-TC----CTGTCA---CTT   1087
                     |.|||||..|.|...||||||  |.||..|| ||    |.|.||   || 
BL00256         1019 TCATCAATGACACACTGGATG--AAAGAAATATCAAAACAGACAAAGCT-   1065

BSNT_05283___   1088 TTCAGTCAGACTTGCCGTATGGAAATAAGAAGATGGAAGCGG--AAGCTC   1135
                          |||| ||..||.|    .||||....||||...||||  |.|...
BL00256         1066 -----TCAG-CTGTCCTT----CAATATTTCGATGTCGGCGGCAATGACA   1105

BSNT_05283___   1136 TGCTGATT-TCAGAAAAA----GTCTATAATCAA-------------GTC   1167
                     |||||||| |  ||||.|    |.|||||| |||             |||
BL00256         1106 TGCTGATTGT--GAAAGAATCTGACTATAA-CAAGTTTGCCGATCTCGTC   1152

BSNT_05283___   1168 GCA----------------------AAGGAAAA----AGGGTTCCCAGTT   1191
                     |.|                      |.||||||    .||.|.||.||| 
BL00256         1153 GGAGCCGACCACGTCAAGCTTGAAGACGGAAAAGCGGCGGCTGCCGAGT-   1201

BSNT_05283___   1192 ATTCATTTACAAGAAAATGAAGCATTTATTAATGTTTCTTTTCAAATGAT   1241
                                     ||||.|                   ||||  |||
BL00256         1202 ----------------ATGAGG-------------------TCAA--GAT   1214

BSNT_05283___   1242 --GGTGAAAGACACATTTGGAGAAGGGGAAACAGCAGCAT---TTCATAT   1286
                       |.|.|.||        |||||.|..| |.||||||| |   |||    
BL00256         1215 CGGCTTAGAG--------GGAGATGATG-ACCAGCAGC-TCCCTTC----   1250

BSNT_05283___   1287 GAAGTCAGGAAAAACCCTATCCTACGTCATGAAAAAGCAGCAAAACA---   1333
                        |||     ||.||||.|         ||.|||   .|.||||||   
BL00256         1251 ---GTC-----AATCCCTTT---------TGCAAA---TGGAAAACAACT   1280

BSNT_05283___   1334 -AAGG--GAT--ATTGATGTCTGTTGA-----------TGGAGTCAGCCG   1367
                      ||||  |||  |..||  ||.|||.|           ||.|..||||..
BL00256         1281 GAAGGCTGATCAAACGA--TCCGTTCAAAAGCGTTATCTGAACCCAGCTA   1328

BSNT_05283___   1368 TT-TATTGGTTGTCAGCGA-AAAGAGCTTTGGCAGTCTGTCACAGGATGT   1415
                     || |||||  ||.||  || |||||  |||.|||                
BL00256         1329 TTATATTG--TGACA--GACAAAGA--TTTCGCA----------------   1356

BSNT_05283___   1416 GCCGCTGAAGGAACAGATGAGAATGGTA-----GGTTATGAGCTTGAGCA   1460
                      |.||||||..|||.||    ||.|..|     ||||.|..||.|| |||
BL00256         1357 -CAGCTGAAAAAACCGA----AAAGCGAAAACCGGTTCTATGCATG-GCA   1400

BSNT_05283___   1461 TTGGCAGGAGACGGT----GGATGTCTCTGAAAAGCTTGAAAACATGG--   1504
                       ||||..|||.|.|    |.|||.||.|    ||  |||||.|..||  
BL00256         1401 --GGCAAAAGAAGCTGACGGCATGGCTTT----AG--TGAAAGCCGGGGA   1442

BSNT_05283___   1505 -----TGCCGAAAGAACA------TACATCTGATTTTCAAACAC-GTGCT   1542
                          || |.|||||| |      |||||.| ||||       | |.|||
BL00256         1443 GGCTTTG-CAAAAGAA-ACTGGATTACATGT-ATTT-------CGGGGCT   1482

BSNT_05283___   1543 CCTAG-TTATCA-------AAT-TGTGAAGC--AGGGAGTTGC-----AT   1576
                      .||| ||||.|       ||| |   ||||  ||||..|.||     ||
BL00256         1483 -GTAGATTATGAGGTATATAATAT---AAGCAAAGGGTATGGCCCGATAT   1528

BSNT_05283___   1577 TAATGCTGTTTATTGGTCTGTTTGTC---AGCGTGCTGTT--TTTTATCG   1621
                     ||      |||.|.||.||||||.||   |.|||..|.||  |||.|.| 
BL00256         1529 TA------TTTGTCGGACTGTTTATCGGAATCGTCTTCTTCGTTTCAGC-   1571

BSNT_05283___   1622 TGCAAGGAAGCATGCTGTATTTGCGGATGTTTACGGAAATAGAAGATACG   1671
                         |||||||.|.||.|||||.|||.|||..||.||..|.||.|||   
BL00256         1572 ----AGGAAGCTTCCTCTATTTCCGGTTGTACACTGATTTGGACGAT---   1614

BSNT_05283___   1672 AGAGTGCAGGTGTTAGC----CTTAAAAAGGAT--------AGGGGTTA-   1708
                      ||         |.|||    .||.|||..|||        .|||.||| 
BL00256         1615 -GA---------TAAGCAGAAATTCAAATCGATTGCCAAAATGGGCTTAA   1654

BSNT_05283___   1709 -------CGGAC-----AAAGAGATTCACTCGATCCTTGGAAAGCAAATA   1746
                            ||.||     ||||.|.|..||            |.|||.||.
BL00256         1655 CAGACCGCGAACTGCATAAAGTGCTGAAC------------AGGCAGATC   1692

BSNT_05283___   1747 GGATTTTTATTCTTCATCCCATTTATCGCAGGTACGATT---CA------   1787
                     ||..|.||.||||||...||   ||||||.|.|.|..||   ||      
BL00256         1693 GGCATCTTGTTCTTCGCGCC---TATCGCTGTTGCCCTTGTCCATGGAGC   1739

BSNT_05283___   1788 -----CGCGG---GCTTT-GCGTATGCAGCGTTAAGTAATATGCTGAATT   1828
                          |||.|   ||||| .||.||||  |.||.||||            
BL00256         1740 TGTGGCGCTGACCGCTTTATCGCATGC--CTTTCAGTA------------   1775

BSNT_05283___   1829 CCAATTTATTTCTT----GAGGCCGTAATTGTCATCTTCATTTATTTTGT   1874
                      ||    |..||||    ||..|.|.|||.||..||..|.|.|..||.|.
BL00256         1776 -CA----ACCTCTTCAAGGAATCTGCAATGGTGCTCGGCGTGTTCTTCGC   1820

BSNT_05283___   1875 ATTCCAGGCTGTTTATTATATCGTCACCCGC---------------CATA   1909
                     ..||||||...|.|||||..||.||..||||               ||.|
BL00256         1821 CATCCAGGTCATATATTACTTCATCGTCCGCTTCTACTATACAAAACAGA   1870

BSNT_05283___   1910 TTTATAAGCGTGCTGTTCTTCAGCGTATGTAA   1941
                       ||.|||||            ||| ||.|||
BL00256         1871 --TAAAAGCG------------GCG-ATTTAA   1887


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