Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05286 and BL00259

See Amino acid alignment / Visit BSNT_05286 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:23
# Commandline: needle
#    -asequence dna-align/BSNT_05286___yvcP.1.5803.seq
#    -bsequence dna-align/BL00259___yxdJ.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05286___yvcP-BL00259___yxdJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05286___yvcP-BL00259___yxdJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05286___yvcP
# 2: BL00259___yxdJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 825
# Identity:     445/825 (53.9%)
# Similarity:   445/825 (53.9%)
# Gaps:         228/825 (27.6%)
# Score: 1072.0
# 
#
#=======================================

BSNT_05286___      1 ---------GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGC     41
                              |||         .||.||||.|||||.||...|...|||||
BL00259___yxd      1 ATGCAAAAAGTG---------ATGATTGTAGAAGACGACCCGAAAATTGC     41

BSNT_05286___     42 TTCTTTGCT------GGGCGGTCATCTTCAAAAATACGGAT---------     76
                     ...||||.|      |      |||.||...||||||||||         
BL00259___yxd     42 AGATTTGTTAAAATCG------CATATTGTCAAATACGGATACAACGTTC     85

BSNT_05286___     77 ATGAAGTGAA--AATTGCTGAACAGCTGAATGATATAAAATTGGAATTTG    124
                     |||.||||||  |.||  |||.|...|.|..|||         ||.||  
BL00259___yxd     86 ATGTAGTGAAAGACTT--TGACCGTGTCATGGAT---------GAGTT--    122

BSNT_05286___    125 CAGAA--ATGAAGCCTGATCTTGTGCTGCTTGATATCAACCTGCCTTTTT    172
                     |||||  |.|..||||||||||||.|||||||||||.||||||||....|
BL00259___yxd    123 CAGAAGCACGGCGCCTGATCTTGTTCTGCTTGATATTAACCTGCCGAGCT    172

BSNT_05286___    173 TTGACGGATTTTATTGGTGCAGGCAAATCCGTACC--------ATTTCCA    214
                     |||||||.|..||.||||||.||||||||||  ||        |||    
BL00259___yxd    173 TTGACGGCTACTACTGGTGCCGGCAAATCCG--CCAGGAATCGATT----    216

BSNT_05286___    215 ATGCGCCGATTATCTTTATATCGGCACGGATCGATGAGCTGAATCAGGTA    264
                      |||.||| |..|.|||||.||.||.||||..|.|||..||.|||||||.
BL00259___yxd    217 -TGCCCCG-TCTTGTTTATTTCTGCGCGGACAGGTGAAATGGATCAGGTG    264

BSNT_05286___    265 ATGGCGATT-GAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATC    313
                     ||||| ||| |||||.|||||.|||||.|.||||||.||||||||.||..
BL00259___yxd    265 ATGGC-ATTGGAAAACGGCGGAGATGACTTTATCACCAAGCCGTTTCACG    313

BSNT_05286___    314 TAGAGGTAGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCA---CATAT    360
                     ..|||.|.||.|||||.|||||   |.||..||.||..||||   |.||.
BL00259___yxd    314 CCGAGATCGTCATGGCAAAAAT---ACGCAGCCAGCTTCGCAGGGCTTAC    360

BSNT_05286___    361 GGTGAATATTCGCCCTCTTTGC-----CGCAGGAA-----TCTAGAATAG    400
                     ||.|||||..||        ||     ||.|||||     .||.|||.| 
BL00259___yxd    361 GGCGAATACGCG--------GCGAAGGCGGAGGAACGGCTGCTGGAAAA-    401

BSNT_05286___    401 TGGAGCTTGGTGGGCTGACGATTTATCCTGA-----TCAAAATGA-----    440
                            .|..||||||..|.|.|||||.||     |..||.|||     
BL00259___yxd    402 -------AGAAGGGCTGCGGCTGTATCCGGAAAGACTTGAACTGACATTT    444

BSNT_05286___    441 ---GGCCGAATGGAACAGCTCCCGTATTCTGTTTT--CCCAAAAAGAATT    485
                        ||.|.||.||               |||.|||  |..||||||||..
BL00259___yxd    445 GCCGGTCAAACGG---------------CTGCTTTGACGAAAAAAGAAGC    479

BSNT_05286___    486 TCAGCTTCTCTCTATTTTTG------TGAGGGA---GCATAAAAAAATTG    526
                     ..|         ||||.|||      |.|.|||   .|||...|.||   
BL00259___yxd    480 GGA---------TATTATTGAAAGCTTAATGGAACGCCATCCGAGAA---    517

BSNT_05286___    527 TTTC---TCGTGATGAACTATTGGAGGC---GTTATGGGATGACGTTGAT    570
                     ||||   .||.||.||   .|||..|||   |.|.||||||||....|..
BL00259___yxd    518 TTTCAGGCCGCGAAGA---TTTGCTGGCCAAGCTGTGGGATGATCAGGCA    564

BSNT_05286___    571 TTTGTCGATGACAATACG-TTAACGGTCAATGTCAAC----CG-GCTGCG    614
                     |.|||.|||||.||.||| ||       |||||||||    || ||..|.
BL00259___yxd    565 TATGTGGATGAAAACACGCTT-------AATGTCAACATTACGCGCGTCA    607

BSNT_05286___    615 GAGAAAA----CTGGAGAATGC-CGG-ACTGAAAGATTGCATTTCCACAA    658
                     ||.||||    |.|||    || ||| |.|| |||||             
BL00259___yxd    608 GAAAAAAATTTCAGGA----GCTCGGTATTG-AAGAT-------------    639

BSNT_05286___    659 TCAGAGGACAA--------------GGCTATCAATTTCAAGTCAATC---    691
                     .|||.||| ||              |||||||..||..|.||  |||   
BL00259___yxd    640 GCAGTGGA-AACAGTGCGGGGCGCGGGCTATCGCTTGAATGT--ATCCTG    686

BSNT_05286___    692 --GGAAGGATGAAGCGGAGTGTTAA    714
                       .|||||..|.||.|||.||.   
BL00259___yxd    687 GGTGAAGGCGGGAGAGGAATGA---    708


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