Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05162 and BL00265

See Amino acid alignment / Visit BSNT_05162 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:16
# Commandline: needle
#    -asequence dna-align/BSNT_05162___yvfM.1.5803.seq
#    -bsequence dna-align/BL00265___yvfM.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05162___yvfM-BL00265___yvfM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05162___yvfM-BL00265___yvfM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05162___yvfM
# 2: BL00265___yvfM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 876
# Identity:     660/876 (75.3%)
# Similarity:   660/876 (75.3%)
# Gaps:          60/876 ( 6.8%)
# Score: 2519.0
# 
#
#=======================================

BSNT_05162___      1 ATGCTGGCAGATATGAAGGTCAGAAAATATATCCGTCTCCTT--------     42
                                 ||||||...||||.||...|.||.||||||        
BL00265___yvf      1 ------------ATGAAGAAAAGAAGATTCTTTCGGCTCCTTCTGACCTA     38

BSNT_05162___     43 TTCTCTTACTTGTTGCTAGCCTTTATG---GCGGTCATCATTGTTTATCC     89
                     |||||     |||||   ||.||||||   ||.||.||||   |.||.||
BL00265___yvf     39 TTCTC-----TGTTG---GCTTTTATGACAGCCGTTATCA---TATACCC     77

BSNT_05162___     90 TCTCCTTTGGACGGCAGGCGCAAGCTTTAATCCCGGCAACAGCTTAATCA    139
                     |||.||||||||||..||.|..||||||||||||||||||||.||..|||
BL00265___yvf     78 TCTGCTTTGGACGGTGGGGGTCAGCTTTAATCCCGGCAACAGTTTGGTCA    127

BSNT_05162___    140 GTACATCCATCATTCCGAAGC--ATCCGACATTCGACCATTACAAAGAAT    187
                     |.||.||.|||||||||  ||  ||||||||||.||.||.||.|||||||
BL00265___yvf    128 GCACTTCTATCATTCCG--GCAAATCCGACATTGGATCACTATAAAGAAT    175

BSNT_05162___    188 TATTTGCGGGCAAGGAAAGCCTTCAATATGTGCAGTGGTATGTCAACTCT    237
                     ||||.||.|||||.||.|||||.|||||.|.|||.||||||.|.|||||.
BL00265___yvf    176 TATTCGCCGGCAAAGAGAGCCTCCAATACGGGCAATGGTATATAAACTCG    225

BSNT_05162___    238 ATGAAGATCAGCCTGTTTACAATGGCAGGGTCTTTGCTCTGTGTGACGTT    287
                     .||||.||||||.|.|||||.|||...||.||..|..||.|.||..|.||
BL00265___yvf    226 CTGAAAATCAGCATCTTTACGATGATCGGATCGGTCATCAGCGTTTCTTT    275

BSNT_05162___    288 TACGGCCTATGCGTTTTCGCGCTTTCGGTTTAAAGGGAGGAAATACGCTT    337
                     |||.||.|||||.|||||.||.|||||.||||||||.||||||.||||||
BL00265___yvf    276 TACAGCTTATGCTTTTTCACGGTTTCGTTTTAAAGGAAGGAAAAACGCTT    325

BSNT_05162___    338 TAACGCTCTTTTTAT------TGCTCCAGATGATTCCTCAGTTTTCAGCT    381
                     ||      .||||||      ||||.||.|||||||||||.|||||.|||
BL00265___yvf    326 TA------GTTTTATTCTTGCTGCTGCAAATGATTCCTCAATTTTCGGCT    369

BSNT_05162___    382 TTAATTGC---CTT-GTTTGTGCTGGCGCAAAT-CTTGGGAATGATCAAT    426
                     ||..||||   ||| ||||    |.|||||.|| ||| ||||||||.||.
BL00265___yvf    370 TTGGTTGCGCTCTTCGTTT----TAGCGCAGATGCTT-GGAATGATGAAC    414

BSNT_05162___    427 AGCCACTGGCTGCTAATCTTGCTTTATATCGGCGGCCTGATCCCGATGAA    476
                     |||||.||||||||.||.|||||.||.||||||||.||.||.||||||||
BL00265___yvf    415 AGCCATTGGCTGCTGATTTTGCTGTACATCGGCGGGCTCATACCGATGAA    464

BSNT_05162___    477 TACGTATTTGATGAAAGGGTACATGGATTCCATTCCGATGGATTTAGACG    526
                     .||||||||||||||||||||.|||||.||||||||.||.|||||.||.|
BL00265___yvf    465 CACGTATTTGATGAAAGGGTATATGGACTCCATTCCCATCGATTTGGATG    514

BSNT_05162___    527 AAAGCGCCAAGATTGACGGAGCCAGCAGCACCAGAATCTTCTTCCAGATC    576
                     |.|||||.|||||||||||.||.||||..||.||.||.|||.|.|||||.
BL00265___yvf    515 AGAGCGCTAAGATTGACGGCGCAAGCAATACAAGGATTTTCCTGCAGATT    564

BSNT_05162___    577 ATTCTGCCATTATCAAAACCGATGGCGGCAGTCGTGGCCATGAACGGCTT    626
                     |||.||||..||||.|||||||||...||.|||||.|||||||||||.||
BL00265___yvf    565 ATTATGCCGCTATCCAAACCGATGATCGCGGTCGTTGCCATGAACGGATT    614

BSNT_05162___    627 TACCGGTCCGCTCGGAGATTTTGTGCTGTCCTCAACCATATTGAGAACGC    676
                     .|||||.||||||||.|||||.||..||||.||.||.||||||.|.||.|
BL00265___yvf    615 CACCGGGCCGCTCGGGGATTTCGTTTTGTCTTCGACGATATTGCGGACAC    664

BSNT_05162___    677 CTGAATCATATACATTGCCCGTCGGTCTATTCAATTTAGTGAATGATGTC    726
                     |.||.||.|||||||||||..|||||.|||.|||||||||.|||||.||.
BL00265___yvf    665 CGGAGTCGTATACATTGCCGATCGGTTTATACAATTTAGTCAATGAGGTG    714

BSNT_05162___    727 ATGGGGGCCAGCTATACGACATTTGCGGCCGGAGCCCTGCTTATCAGCAT    776
                     |||||.||||||||||||||.|||||.|||||.||..|..|.||||||||
BL00265___yvf    715 ATGGGAGCCAGCTATACGACGTTTGCCGCCGGCGCTATTTTGATCAGCAT    764

BSNT_05162___    777 ACCGGTTGCCGTTATCTTTATCATGCTGCAAAAGAATTTTGTATCCGGAT    826
                     ||||||.|||||.|||||||||||||||||||||||.|||||.||.||||
BL00265___yvf    765 ACCGGTAGCCGTCATCTTTATCATGCTGCAAAAGAACTTTGTGTCAGGAT    814

BSNT_05162___    827 TAACCGCAGGCGGAACGAAGGGCTAA    852
                     |.||.||||||||||||||.||.||.
BL00265___yvf    815 TGACGGCAGGCGGAACGAAAGGATAG    840


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05162 and BL00265

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
