Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04167 and BL00330
See
Amino acid alignment /
Visit
BSNT_04167 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04167___ysiA.1.5803.seq
# -bsequence dna-align/BL00330___ysiA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04167___ysiA-BL00330___ysiA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04167___ysiA-BL00330___ysiA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04167___ysiA
# 2: BL00330___ysiA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 622
# Identity: 436/622 (70.1%)
# Similarity: 436/622 (70.1%)
# Gaps: 56/622 ( 9.0%)
# Score: 1481.5
#
#
#=======================================
BSNT_04167___ 1 TTGAAGCAAAAACGGCCAAAGTATATGCAGATTATTGATGCAGCAGTAGA 50
|||||.|||||..|.||||||||||||||||||||.||.|||||.||...
BL00330___ysi 1 TTGAAACAAAAGAGACCAAAGTATATGCAGATTATCGACGCAGCTGTCAT 50
BSNT_04167___ 51 AGTCATTGCAGAAAACGGCTACCACCAGTCACAGGTATCCAAAATTGCCA 100
.||.||||||||||||||.|||||.|||.|.|||||.||.|||||.||||
BL00330___ysi 51 TGTGATTGCAGAAAACGGATACCATCAGGCGCAGGTTTCAAAAATCGCCA 100
BSNT_04167___ 101 AACAAGCTGGGGTAGCGGACGGCACCATCTATCTCTATTTTAAAAACAAA 150
|.||.||.|||||.||||||||||||||.|||||.|||||||||||||||
BL00330___ysi 101 AGCAGGCCGGGGTGGCGGACGGCACCATTTATCTTTATTTTAAAAACAAA 150
BSNT_04167___ 151 GAAGATATTTTAATTTCTCTTTTCAAAGAAAAAATGGGTCAATTTATTGA 200
|||||.|||.|.||.||..|.||||||||.||||||||.||.|||||.||
BL00330___ysi 151 GAAGACATTCTCATCTCATTATTCAAAGAGAAAATGGGACAGTTTATCGA 200
BSNT_04167___ 201 GCGGATGGAAGAGGACATTAAAGAAAAAGCAACAGCGAAAGAGAAATT-G 249
||.|||| ||.| |||||| ..|||||||| ||||| |
BL00330___ysi 201 GCAGATG--AGCG-------AAGAAA---TGACAGCGAA----AAATTCG 234
BSNT_04167___ 250 GC---------GCTTGTGAT-TTC-----AAAGCATTTTTCCCT-TTTAG 283
|| ||||..|.| ||| ||||||.|||...|| .|.||
BL00330___ysi 235 GCGACAGAAAAGCTTTCGCTGTTCATCAAAAAGCACTTTGAACTGCTCAG 284
BSNT_04167___ 284 CGGGTGACCATAATCTCGCAATTGTCACGCAGCTTGAGCTCCGCCAATCC 333
| .|.||.|...|.|||||.||||||||.|||||||||||..|.||.||.
BL00330___ysi 285 C-AGCGATCGCCACCTCGCGATTGTCACCCAGCTTGAGCTGAGGCAGTCG 333
BSNT_04167___ 334 AA-CTTGGAGCTGCGCCAAAAAATCAACGAAATATTAAAAGGCTACTTAA 382
|| ||| ||||||.|.|..||||||||.||.||..|.|||||.|||||||
BL00330___ysi 334 AATCTT-GAGCTGAGGCTGAAAATCAATGAGATTCTCAAAGGGTACTTAA 382
BSNT_04167___ 383 ATATTTTGGATGGCATTTTGACGGAAGGCATACAATCAGGCGAA-TTAAA 431
..||..||||.|.|||..|.||.|||||.|.|.||.|.||.||| |||||
BL00330___ysi 383 CGATCCTGGAAGACATCATCACCGAAGGAAAAGAAGCTGGAGAATTTAAA 432
BSNT_04167___ 432 AGAAGGCCTCGACGTCCGCCTCGCCCGGCAGATGATTTTTGGAACGATTG 481
||.|.| ||.|||||||||||.||...||||||||||||.||.|||.|.|
BL00330___ysi 433 AGCACG-CTTGACGTCCGCCTTGCGAAGCAGATGATTTTCGGTACGGTGG 481
BSNT_04167___ 482 ACGAAACCGTGACAACATGGGTGATGAATGACCAAAAGTACGATCTTGCT 531
|.||.||.||.|||||.||||||||||||||.|||||.||||||||..|.
BL00330___ysi 482 ATGAGACGGTTACAACCTGGGTGATGAATGATCAAAAATACGATCTCCCA 531
BSNT_04167___ 532 GCGCTTTCAGACAGCGTTTTAGAATTATTG------GTGTCCGGAATTCA 575
...||..||||||||.||...|||||..|| |.||.|.|.|..||
BL00330___ysi 532 AACCTGGCAGACAGCATTCATGAATTGCTGATCCACGGGTTCAGCAGCCA 581
BSNT_04167___ 576 TAATA---------AGTAA--- 585
.||.| ||.||
BL00330___ysi 582 AAAGACGAAGGAGGAGGAATAA 603
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.