Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04173 and BL00336
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_04173___yshB.1.5803.seq
# -bsequence dna-align/BL00336___yshB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04173___yshB-BL00336___yshB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04173___yshB-BL00336___yshB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04173___yshB
# 2: BL00336___yshB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 575
# Identity: 356/575 (61.9%)
# Similarity: 356/575 (61.9%)
# Gaps: 79/575 (13.7%)
# Score: 952.5
#
#
#=======================================
BSNT_04173___ 1 ATGCTAGATATCATCATCTTAATCTTGC-----TCCTGATGGGGACTTTA 45
|||.|||||||||||||..|.||.|||| |||.|.|.| ||||
BL00336___ysh 1 ATGTTAGATATCATCATTATCATTTTGCTTTTGTCCGGTTTG----TTTA 46
BSNT_04173___ 46 CTGGGGTTAAAACGCGGTTTTATCCTGCAGTTTATCCGCTTG---ACGAG 92
.|||..|.|||| |.||.|||||||..|||||||||||.||| |||
BL00336___ysh 47 TTGGACTCAAAA-GAGGGTTTATCCGCCAGTTTATCCGTTTGGTTACG-- 93
BSNT_04173___ 93 CTTTATTTTATCAATTGCCTTTGCGGCTTTATTCTATAA----AAACGTG 138
|||||...|.|.||.|| ||.|||...|..||||.| .|.|.||
BL00336___ysh 94 -TTTATCGCAGCGATCGC---TGTGGCCGCAACCTATTACGGCGACCTTG 139
BSNT_04173___ 139 -------GCACCGCATTTACATTGGATTCCCGCACCCGATTTTTCAGCGG 181
||.|.|| ||||||||..|.|||||.|||.|.|..|
BL00336___ysh 140 CGCCTAAGCTCGGC--------TGGATTCCGTCTCCCGACTTTACGGGCG 181
BSNT_04173___ 182 GACAGCCGGCTCTTTC-TTTTTTTACGGGGAA---TTTGGAAGCAGCGTA 227
|.|||.|.||.||..| |||.|..|| |||| || ||||..||.||
BL00336___ysh 182 GCCAGGCTGCGCTGGCGTTTGTAAAC--GGAAGCCTT--GAAGGCGCTTA 227
BSNT_04173___ 228 CTATAATGCGATTGCGTTTATCGTTTTATTTATCATTGCTAAAATCTTAC 277
.||.|||..||||||||||.|..||.|.||||||.|..|.|..|||.|..
BL00336___ysh 228 TTACAATATGATTGCGTTTTTGATTCTCTTTATCCTGACGATTATCCTTT 277
BSNT_04173___ 278 TGAGAATCATCGGCTCGTTCTTGAGTATTGTCGCCGGCATTCCGGTGATC 327
|||||.|...||..|||||.|||..|...|||||..||||.|||||..||
BL00336___ysh 278 TGAGAGTTGCCGCATCGTTTTTGGATGCCGTCGCAAGCATACCGGTTCTC 327
BSNT_04173___ 328 AAACAAATCAACCAATTGCTGGGCGCCGTTCTCGGTTTTCTAGAAGTCTA 377
|||||.|||||||||.|.||.||.|||||.|||||||||...|||.||||
BL00336___ysh 328 AAACAGATCAACCAAATACTCGGAGCCGTGCTCGGTTTTGCGGAAATCTA 377
BSNT_04173___ 378 TTTATTTACATTTGTGCTGCTGTATGTCGCATCCGTTCTGCCGGTAGATG 427
|.|.||....|||||..|.||||...|||.|.|..||||||||.|.||||
BL00336___ysh 378 TCTGTTCGTGTTTGTCGTTCTGTTCATCGGAACGCTTCTGCCGATTGATG 427
BSNT_04173___ 428 CACTGCAGCAA--ATGATGG--GG--CAATCGTCCCTCGCAAATGTGATC 471
..||||| || ||||||| || ||.| |.|.||..||.|||||
BL00336___ysh 428 TCCTGCA--AAGCATGATGGCCGGTTCAGT----CATGGCTGATTTGATC 471
BSNT_04173___ 472 ATTAACCATACACCATACTTGTCAGGGCTCCTACAAG-------AGCTG- 513
|||.|..|.|||||.|..||.||| .|||.| |.|||
BL00336___ysh 472 ATTCATAAAACACCGTTTTTATCA-------AACATGTTAAACAATCTGC 514
BSNT_04173___ 514 TGGACA-CAGTACGGGGC---ATAA 534
|| || ||||||||..| .|||
BL00336___ysh 515 TG--CATCAGTACGGATCTTTGTAA 537
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