Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04174 and BL00337

See Amino acid alignment / Visit BSNT_04174 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence dna-align/BSNT_04174___yshA.1.5803.seq
#    -bsequence dna-align/BL00337___zapA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04174___yshA-BL00337___zapA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04174___yshA-BL00337___zapA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04174___yshA
# 2: BL00337___zapA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 266
# Identity:     210/266 (78.9%)
# Similarity:   210/266 (78.9%)
# Gaps:          16/266 ( 6.0%)
# Score: 815.5
# 
#
#=======================================

BSNT_04174___      1 TTGTCTGACGGCAAAAAAACAAAAACAACCGTTGACATTTACGGCCAGCA     50
                     ||||||||.||..|||||||.||||||||.||||||||.|||||.|||||
BL00337___zap      1 TTGTCTGATGGTCAAAAAACGAAAACAACAGTTGACATCTACGGTCAGCA     50

BSNT_04174___     51 CTTCACGATTGTCGGTGAAGAAAGC-AGAGCCCATATGAGGTATGTCGCC     99
                     .|||||.||||||||.||.||.||| |||| ||||||||||.|.||.|||
BL00337___zap     51 ATTCACAATTGTCGGCGATGAGAGCAAGAG-CCATATGAGGCACGTTGCC     99

BSNT_04174___    100 GGAATTGTTGATGATAAAATGAGAGAAATCAATGAAAAAAATCCATACCT    149
                     ...|||||.|||||||||||||||||||||||.|||||||||||.||.||
BL00337___zap    100 TCGATTGTGGATGATAAAATGAGAGAAATCAACGAAAAAAATCCGTATCT    149

BSNT_04174___    150 TGATATAAATAAACTTGCAGTGCTGACAGCGGTAAATGTGGTGCACGATT    199
                     |||||||||||||||.||.||..||||.||.|||||||||||.|||||||
BL00337___zap    150 TGATATAAATAAACTGGCCGTTTTGACGGCTGTAAATGTGGTTCACGATT    199

BSNT_04174___    200 ATGTCAA-ATTA--CAAGA----GAAATGTGAAAAACTGGAGCGGCAGCT    242
                     ||.|.|| .|||  .||||    ||.|..|.||||   |||    ||..|
BL00337___zap    200 ATTTGAAGCTTAAGGAAGAGCTTGAGAGATTAAAA---GGA----CAAAT    242

BSNT_04174___    243 TAAAGAAAAGGATTGA    258
                     .|||||||||||||||
BL00337___zap    243 AAAAGAAAAGGATTGA    258


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