Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04180 and BL00340

See Amino acid alignment / Visit BSNT_04180 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence dna-align/BSNT_04180___pheS.1.5803.seq
#    -bsequence dna-align/BL00340___pheS.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04180___pheS-BL00340___pheS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04180___pheS-BL00340___pheS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04180___pheS
# 2: BL00340___pheS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1047
# Identity:     821/1047 (78.4%)
# Similarity:   821/1047 (78.4%)
# Gaps:          24/1047 ( 2.3%)
# Score: 3171.0
# 
#
#=======================================

BSNT_04180___      1 ATGGAAGAAAAGCTAAAACAGCTGGAACAAGAAGCTTTAGAACAAGTAGA     50
                     |||.|.|||.||||.||||.|||.|||.|||||||..|.|||.||||.||
BL00340___phe      1 ATGCAGGAAGAGCTGAAACGGCTTGAAAAAGAAGCGGTTGAAAAAGTGGA     50

BSNT_04180___     51 AGCGGCAAGCTCATTGAAGGTTGTCAATGATATTCG-GGTGCAATATCTC     99
                     |||.||..|.|||||.||.|..|||||.|||.|.|| |.||| .|||||.
BL00340___phe     51 AGCCGCTGGTTCATTAAAAGAAGTCAACGATGTCCGCGTTGC-GTATCTG     99

BSNT_04180___    100 GGAAAAAAAGGGCCGATTACAGAAGTGCTGCGCGGAATGGGCAAGCTTTC    149
                     ||||||||.||.|||||.|||||||||||.||.||||||||.|||||.||
BL00340___phe    100 GGAAAAAAGGGACCGATCACAGAAGTGCTTCGGGGAATGGGAAAGCTGTC    149

BSNT_04180___    150 TGCTGAGGAACGTCCAAAAATGGGGGCCCTCGCGAACGAAGTAAGGGAGC    199
                     .|||||.|||.|.||.||||||||||||.|.||||||||||||||.|||.
BL00340___phe    150 CGCTGAAGAAAGGCCGAAAATGGGGGCCTTGGCGAACGAAGTAAGAGAGA    199

BSNT_04180___    200 GTATTGCCAATGCGATTGCTGACAAAAA----CGAGAAGCTTGAAGAAGA    245
                     ..||.|||...|||||.||.||.|||||    ||    .|||||.|||||
BL00340___phe    200 AAATCGCCGCGGCGATCGCCGAAAAAAATGCCCG----CCTTGAGGAAGA    245

BSNT_04180___    246 GGAAATGAAACAGAAGCTTGCAGGA-CAGACAATTGACGTCACGCTGCCG    294
                     .||..|||||..||||| ||.|.|| |||||.||||||||.|||||.|||
BL00340___phe    246 AGAGGTGAAAAGGAAGC-TGAAAGAGCAGACGATTGACGTGACGCTTCCG    294

BSNT_04180___    295 GGGAACCCTGTTG----CAGTCG-GCGGCCGCCATCCGCTCACTGTTGTC    339
                     ||.|.||||| ||    |||..| ||||    ||||||||.||..|.||.
BL00340___phe    295 GGAAGCCCTG-TGAAAACAGGAGCGCGG----CATCCGCTGACGATCGTT    339

BSNT_04180___    340 ATTGAAGAAATTGAAGATTTATTTATCGGTATGGGCTACACAGTCGAGGA    389
                     |||||||||||.|||||.||.||||||.|.|||||.||..|.||.||.||
BL00340___phe    340 ATTGAAGAAATCGAAGACTTGTTTATCAGCATGGGATATTCGGTGGAAGA    389

BSNT_04180___    390 AGGGCCAGAGGTTGAAACGGATTACTACAACTTCGAATCGCTCAATCTTC    439
                     .|||||.||.||.|||||.||.||.||.|||||||||.|||||||.||||
BL00340___phe    390 GGGGCCTGAAGTGGAAACCGACTATTATAACTTCGAAGCGCTCAACCTTC    439

BSNT_04180___    440 CGAAAGAACACCCTGCGCGCGATATGCAGGACAGCTTTTACATCACAGAG    489
                     |||||||.|||||.||.||.||||||||.|||||||||||.||.||.||.
BL00340___phe    440 CGAAAGAGCACCCGGCCCGGGATATGCAAGACAGCTTTTATATTACGGAA    489

BSNT_04180___    490 GAAACTTTGATGAGAACGCAAACTTCTCCTGTCCAAACACGGACGATGGA    539
                     ||.||..||||||||||.||.||.||||||||.||.||.||.||||||||
BL00340___phe    490 GATACGCTGATGAGAACACAGACATCTCCTGTTCAGACGCGCACGATGGA    539

BSNT_04180___    540 AAAGCATAAAGGCAAAGGTCCCGTTAAAATCATTTGCCCGGGTAAAGTAT    589
                     |||.||||||||||||||.||.||.||||||||.|||||.||.|||||.|
BL00340___phe    540 AAAACATAAAGGCAAAGGCCCTGTCAAAATCATCTGCCCCGGCAAAGTGT    589

BSNT_04180___    590 ATCGCCGTGATAACGATGATGCGACGCACTCTCACCAATTTATGCAAATT    639
                     |.|||||.||.||||||||||||||.||.||.||.||.||||||||.|||
BL00340___phe    590 ACCGCCGCGACAACGATGATGCGACACATTCCCATCAGTTTATGCAGATT    639

BSNT_04180___    640 GAAGGGCT-TGTCGTTGACAAAAACATCAGCATGAGTGATTTAAAAGGAA    688
                     |||||||| || |||||||....|.|||||||||||.||.||||||||||
BL00340___phe    640 GAAGGGCTCTG-CGTTGACCGTGATATCAGCATGAGCGACTTAAAAGGAA    688

BSNT_04180___    689 CGCTTGAACTCGTTGCGAAAAAAATGTTCGGGCAAGACCGTGAAATCAGA    738
                     |.||.|||...||.||||||||.||||||||..||||.||.|||||||||
BL00340___phe    689 CCCTGGAAACGGTCGCGAAAAAGATGTTCGGCGAAGAGCGCGAAATCAGA    738

BSNT_04180___    739 CTCCGCCCAAGCTTCTTCCCGTTTACTGAGCCTTCAGTAGAAGTGGATGT    788
                     ||.||.||||||||||||||||||||.|||||.||.||.|||||.|||||
BL00340___phe    739 CTGCGTCCAAGCTTCTTCCCGTTTACAGAGCCGTCTGTCGAAGTCGATGT    788

BSNT_04180___    789 GACATGCTTTAAATGTGGTGGAAACGGCTGCTCAGTATGTAAAGGAACAG    838
                     ..|.|||||||||||.||.||.||.||||||||.||.||||||..|||.|
BL00340___phe    789 TTCCTGCTTTAAATGCGGAGGCAAAGGCTGCTCCGTTTGTAAACAAACGG    838

BSNT_04180___    839 GCTGGATTGAAATCCTCGGTGCCGGAATGGTTCACCCGAACGTGCTTAAA    888
                     |||||||.|||||.|||||.|||||||||||.||.|||||||||||..||
BL00340___phe    839 GCTGGATCGAAATTCTCGGCGCCGGAATGGTGCATCCGAACGTGCTCGAA    888

BSNT_04180___    889 ATGGCTGGCTTTGATCCGAAGGAATATCAGGGCTTCGCATTCGGAATGGG    938
                     |||||.||.||.|||.|.||..||||||||||.||.||.||.||.|||||
BL00340___phe    889 ATGGCCGGATTCGATTCCAAACAATATCAGGGATTTGCTTTTGGGATGGG    938

BSNT_04180___    939 TGTTGAGCGCATCGCGATGCTGAAATACGGCATTGATGATATCCGCCACT    988
                     .|||||.||.|||||.||||||||.|||||||||||.||.||.||.||.|
BL00340___phe    939 CGTTGAACGGATCGCAATGCTGAAGTACGGCATTGACGACATTCGTCATT    988

BSNT_04180___    989 TCTATACAAACGATGTCAGATTTATTTCGCAGTTTAAACAGGCGTAA   1035
                     |||||||.|||||||||||||||.|.||.||.||||||||.||.|||
BL00340___phe    989 TCTATACGAACGATGTCAGATTTTTATCTCAATTTAAACAAGCTTAA   1035


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