Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04201 and BL00351

See Amino acid alignment / Visit BSNT_04201 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:17
# Commandline: needle
#    -asequence dna-align/BSNT_04201___araB.1.5803.seq
#    -bsequence dna-align/BL00351___araB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04201___araB-BL00351___araB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04201___araB-BL00351___araB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04201___araB
# 2: BL00351___araB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1764
# Identity:    1210/1764 (68.6%)
# Similarity:  1210/1764 (68.6%)
# Gaps:         186/1764 (10.5%)
# Score: 4057.5
# 
#
#=======================================

BSNT_04201___      1 ATGGCTTACACAATAGGGGTTGATTTTGGAACTTTATCAGGAAGAGCAGT     50
                                                      ||.|||||..|.|||||
BL00351___ara      1 ---------------------------------TTGTCAGGGCGTGCAGT     17

BSNT_04201___     51 GCTCGTTCATGTCCAAACAGGGGAGGAACTTGCGGCTGCTGTAAAAGAAT    100
                     .|||||..||||||..|||||.||||||.|.|||.|.|||||.|||||.|
BL00351___ara     18 TCTCGTCGATGTCCGGACAGGTGAGGAAATCGCGACAGCTGTCAAAGAGT     67

BSNT_04201___    101 ACCGGCATGCTGTCATTGATACCG------TCC-TTCCAAAAACGGGTCA    143
                     ||..|||.|..||.||  |.||||      ||| .||..|||.||     
BL00351___ara     68 ACACGCACGGGGTGAT--AGACCGGGAGCTTCCGGTCTCAAAGCG-----    110

BSNT_04201___    144 AAAGCTGCCGCGTGACTGGGCGCTGCAGCACCCTGCTGATTACCTCGAAG    193
                     ||||||.|||.|.|||||||||||.|||||.||.||.||||||.|.||||
BL00351___ara    111 AAAGCTTCCGAGAGACTGGGCGCTCCAGCATCCGGCCGATTACATTGAAG    160

BSNT_04201___    194 TCTTGGAAACAACCATTCC--GTCTTTACTCGAACAG--ACGGGCGTTGA    239
                     |..||||...|||.|||||  |.||||  |..|||||  |...|||  ||
BL00351___ara    161 TGCTGGAGGAAACGATTCCGAGCCTTT--TGAAACAGTCAAAAGCG--GA    206

BSNT_04201___    240 ACCGAAAGACATTATCGGGATTGGAATTGATTTCACGGCATGTACGATCC    289
                     .||||||||.||.|||||.||.|||||.|||||||||||.||.|||||..
BL00351___ara    207 TCCGAAAGAAATCATCGGAATCGGAATCGATTTCACGGCTTGCACGATTT    256

BSNT_04201___    290 TTCCTATTGAC-AGCAGCGGGCAGCCGTTATGCATGCTGCCTGAATATGA    338
                     |.||..||||| || |.||||...||..|.||.|||..|...||.||||.
BL00351___ara    257 TGCCCGTTGACGAG-AACGGGACTCCTCTTTGTATGAGGGAAGAGTATGC    305

BSNT_04201___    339 AGAGGAGCCGCACAGCTATGTGAAGCTCTGGAAGCATCATGCGGCCCAAA    388
                     ...|||.||||||||||||||||||||.||||||||.|||||.||.||..
BL00351___ara    306 GTCGGAACCGCACAGCTATGTGAAGCTTTGGAAGCACCATGCTGCACAGG    355

BSNT_04201___    389 AACATGCTGATCGGCTCAATCAAATCGCGGAAG-AAGAAGGGAAGGCTTT    437
                     |.||.||..||||..|.|||||||||||||||| |||||..||| .||||
BL00351___ara    356 AGCAGGCGAATCGCTTAAATCAAATCGCGGAAGAAAGAAATGAA-CCTTT    404

BSNT_04201___    438 TTT----ACAGCGGTACGGAGGAAAAATTTCATCAGAATGGATGATTCCA    483
                     |.|    |||    |||||.||.||||||||.||.||.|||.|..|||||
BL00351___ara    405 TCTTCAAACA----TACGGCGGGAAAATTTCTTCCGAGTGGCTCGTTCCA    450

BSNT_04201___    484 AAGGTCATGCAAATTGCCGAGGAAGCGCCTCACATTTATGAAGCGGCTGA    533
                     ||.||.||||||||.||.||.|||||||||.||||||||||.||.||.| 
BL00351___ara    451 AAAGTGATGCAAATCGCGGAAGAAGCGCCTGACATTTATGATGCCGCAG-    499

BSNT_04201___    534 CCG-GATCATCGAGGCTGCGGACTGGATCGTGTACCAGCTGTGCGGCTCG    582
                     ||| ||||||.||.||.||.|||||||||||.||...|||||||||..|.
BL00351___ara    500 CCGAGATCATGGAAGCGGCCGACTGGATCGTCTATATGCTGTGCGGAACC    549

BSNT_04201___    583 CTCAAGCGAAGCAATTGTACCGCAGGGTATAAAGCGATGTGGAGTGAAAA    632
                     ...|||||.|.||||||.||.||.||.|||||||||||.|||| ..||.|
BL00351___ara    550 AGAAAGCGCAACAATTGCACAGCGGGTTATAAAGCGATTTGGA-ACAATA    598

BSNT_04201___    633 AGCG-GGGTATCCGTCAGATGATTTCTT--------------------TG    661
                     ||.| ||.|||||.||.||.||||||||                    ||
BL00351___ara    599 AGAGCGGCTATCCTTCCGACGATTTCTTCGCAAGCCTGCATCCGAAGCTG    648

BSNT_04201___    662 AGAAATTAAATCCTTCAATGAAAACGATTACAAAGGACAAATTGGCAGGT    711
                     |.||||   |||.|||....|||||  |.||..||||             
BL00351___ara    649 AAAAAT---ATCGTTCGGGAAAAAC--TAACGGAGGA-------------    680

BSNT_04201___    712 TCTATTCATTCGGTAGGAGAAAAAGCCGGCAGTCTGACTGAAAAAATGGC    761
                       ||||.||||.|||||.||||||||.|||.|.|||||||||.|||||||
BL00351___ara    681 --TATTTATTCTGTAGGCGAAAAAGCGGGCGGACTGACTGAAGAAATGGC    728

BSNT_04201___    762 ----AAAGCTGACAGGGCTTCTCCCGGGAACGGCTGTTGCGGTTGCCAAT    807
                         |||    |||||||||||..|.||.|||||.||.||.||.||.|||
BL00351___ara    729 CGGGAAA----ACAGGGCTTCTGGCAGGTACGGCGGTCGCTGTCGCAAAT    774

BSNT_04201___    808 GTGGACGCTCATGTTTCCGTACCGGCGGTTGGCATTACAGAGCCAGGGAA    857
                     ||.||.||||||||.||.||.||||||||.|||||.||||||||.||.||
BL00351___ara    775 GTTGATGCTCATGTGTCGGTTCCGGCGGTCGGCATCACAGAGCCGGGCAA    824

BSNT_04201___    858 AATGCTGATGATTATGGGAACCTCAACGTGCCATGTTCTTCTTGGTGAAG    907
                     .|||||||||||.||||||||.||.||.||.|||.|.||.||.||.||.|
BL00351___ara    825 GATGCTGATGATCATGGGAACGTCTACCTGTCATATGCTGCTCGGCGAGG    874

BSNT_04201___    908 AGGTGCA-TATCGTTCCAGGTATGTGCGGCGTTGTGGACAACGGAATTCT    956
                     |.|| || .||.||.||.||.|||||||||||.||.||..||||.|||||
BL00351___ara    875 ATGT-CAGGATGGTGCCGGGAATGTGCGGCGTCGTTGAAGACGGGATTCT    923

BSNT_04201___    957 CCCGGGCTATGCGGGATATGAAGCCGGGCAGTCCTGTGTCGGCGATCATT   1006
                     .||||||||||..||.||||||||.||.||.||.||.||.|||||.||||
BL00351___ara    924 GCCGGGCTATGTCGGCTATGAAGCGGGCCAATCGTGCGTTGGCGACCATT    973

BSNT_04201___   1007 TTGACTGGTTTGTGA--AAACA-TGTGTCCCGCCAGCTTAT------CAA   1047
                     ||.|.|||   .|||  .|||| |.|||.||...|||.|||      .||
BL00351___ara    974 TTCATTGG---CTGATTCAACACTTTGTTCCAGAAGCGTATTTGAAAGAA   1020

BSNT_04201___   1048 GAGGAAGC--AAAGGAAAAAAACATTGGCGTTCATGAGCTGCTGAGTGAG   1095
                     |..|||||  ||.||        |||..|.||.|.||.||||||..|.|.
BL00351___ara   1021 GCTGAAGCCGAAGGG--------ATTTCCATTTACGAACTGCTGTCTCAA   1062

BSNT_04201___   1096 AAAGCAAACCATCAAGCGCCA----GGTGAAAGCGGCCTGCTTGCTTTAG   1141
                     ||.|    ||..||..|.|||    |||||||||||..|||||||.||.|
BL00351___ara   1063 AAGG----CCGGCAGTCTCCAAATCGGTGAAAGCGGTTTGCTTGCATTGG   1108

BSNT_04201___   1142 ATTGGTGGAATGGAAACCGTTCAACTCTTGTTGATGCAGATTTAACAGGG   1191
                     ||||||||||.||||||||||||||.||.||||||||.|||.|.||.||.
BL00351___ara   1109 ATTGGTGGAACGGAAACCGTTCAACACTCGTTGATGCCGATCTGACGGGA   1158

BSNT_04201___   1192 ATGCTGCTTGGAATGACACTGCTG--ACGAAGCCTGAAGAGATTTATAGA   1239
                     ||||||||.||.|||||.||  ||  ||.||||||||||||||.||..|.
BL00351___ara   1159 ATGCTGCTCGGTATGACCCT--TGCCACTAAGCCTGAAGAGATATACCGT   1206

BSNT_04201___   1240 GCGTTAGTTGAAGCGACAGCTTACGGAACCCGGATGATTATCGAAACATT   1289
                     ||.||.|||||||||||.||.|||||.||..||||.|||||.|||||.||
BL00351___ara   1207 GCATTGGTTGAAGCGACTGCCTACGGGACGAGGATCATTATTGAAACGTT   1256

BSNT_04201___   1290 CAAAGAAAGCGGTGTTCCGATTGAGGAACTATACGCAGCGGGCGGAATAG   1339
                     ||.|.|||||||.||.|||||.|||||.||.||.||.||.||.|||||.|
BL00351___ara   1257 CAGACAAAGCGGCGTGCCGATCGAGGAGCTGTATGCCGCAGGAGGAATCG   1306

BSNT_04201___   1340 CTGAGAAAAACCCGTTTGTCATGCAGATTTATGCGGATGTGACAAACATG   1389
                     |.||.|||||.||||||.||||||||.||||.||||||||.||.||||||
BL00351___ara   1307 CCGAAAAAAATCCGTTTATCATGCAGGTTTACGCGGATGTCACCAACATG   1356

BSNT_04201___   1390 GACATTAAAATCTCTGGTTCACCGCAAGCCCCAGCCTTAGGATCTGCCAT   1439
                     ||.||.|||||.||.||.||.|||||.||.||.||.|||||.||.||.||
BL00351___ara   1357 GAAATCAAAATTTCCGGATCTCCGCAGGCGCCGGCTTTAGGTTCAGCGAT   1406

BSNT_04201___   1440 TTTCGGTGCGCTTGCAGCAGGCAAAGAA--AAAGGCGGCTACGATGACAT   1487
                     .|||||.|||||.||.||.||  |||.|  ||.|||||.|||||..|.||
BL00351___ara   1407 ATTCGGAGCGCTCGCGGCCGG--AAGCATGAACGGCGGTTACGACCATAT   1454

BSNT_04201___   1488 CAAAGAGGCAGCGGCGAACATGGGAAAACTGAAAGATATAACTTATACGC   1537
                     |.||||.||||..||..|.|||||.||..|.||.||||.|||.||.|..|
BL00351___ara   1455 CGAAGAAGCAGTCGCACATATGGGCAAGATCAAGGATAAAACGTACAAAC   1504

BSNT_04201___   1538 CAAATGCCGAAAACG---CCGCGGTTTAT--GAAAAATTGTACGCTGAAT   1582
                     |||.|.|.|||||||   ||     ||||  ||..|..|.||.||.||||
BL00351___ara   1505 CAATTCCTGAAAACGTTTCC-----TTATACGATCAGCTTTATGCGGAAT   1549

BSNT_04201___   1583 ATAAAGAGCTGGTT-CA-TTATTTCGGAAAAGAAAACCATGTCATGAAGC   1630
                     ||||.|||||  || || .||.||||||||..|||||.||||.|||||.|
BL00351___ara   1550 ATAAGGAGCT--TTACACGTACTTCGGAAAGCAAAACAATGTGATGAAAC   1597

BSNT_04201___   1631 GTCTGAAAACGATCAAAAATCTTCAAT---TTTCATCTG---CCGCCAAA   1674
                     |.||.||||...|.|||||..|.||.|   ||...||||   |||..|||
BL00351___ara   1598 GCCTTAAAAAATTGAAAAACATCCAGTCCCTTAGTTCTGACACCGGTAAA   1647

BSNT_04201___   1675 AAGAATTGA-----   1683
                     ..||  ||.     
BL00351___ara   1648 GCGA--TGGCTTAG   1659


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.