Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04313 and BL00372
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:27
# Commandline: needle
# -asequence dna-align/BSNT_04313___hisJ.1.5803.seq
# -bsequence dna-align/BL00372___hisJ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04313___hisJ-BL00372___hisJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04313___hisJ-BL00372___hisJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04313___hisJ
# 2: BL00372___hisJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 865
# Identity: 573/865 (66.2%)
# Similarity: 573/865 (66.2%)
# Gaps: 110/865 (12.7%)
# Score: 1770.5
#
#
#=======================================
BSNT_04313___ 1 ATGCAAAAGCGAGACGGACATATTCACACACCATTTTGCCCTCACGGCTC 50
||||..||.||||||||.|||.||||..|.||.|||||.||.|||||.||
BL00372___his 1 ATGCTGAAACGAGACGGTCATGTTCATTCTCCCTTTTGTCCGCACGGATC 50
BSNT_04313___ 51 CAATGACACACTCAGACAATATGCAGAAGAA----GCCTTAAAAAAAGGG 96
.||.|||..|.|||||.|.|||..||||||| || ||||||||.
BL00372___his 51 AAAAGACGAATTCAGATATTATATAGAAGAATTGTGC----AAAAAAGGC 96
BSNT_04313___ 97 TTCGAATCGATTACTTTTACCGAACACGCCCCATTGCCGCCCTCTTTTAC 146
|||.||||..|..|.|||||.||.|||||.||..|.|||||.||.||||.
BL00372___his 97 TTCCAATCCGTATCCTTTACTGAGCACGCGCCGCTTCCGCCTTCATTTAT 146
BSNT_04313___ 147 CGATCCCACGCCGCTGAAAGACAGCGCGATGGCG-----CAAGCTTCTTT 191
.|||||.||.|||..||||||||||||.|||.|| |.||| |
BL00372___his 147 TGATCCGACTCCGGAGAAAGACAGCGCCATGCCGATCTCCCAGC-----T 191
BSNT_04313___ 192 GGAACGCTATATTCA-----TGAAATTTCCGGATTAAAAAAAGAATATCG 236
||..|||||||||.| ||| |||.|.|.||..|||||||..|
BL00372___his 192 GGGCCGCTATATTGAACGGCTGA-----CCGAACTGAAGGAAGAATACAG 236
BSNT_04313___ 237 CGGACAGCTTAGCATACGGACAGGGCTTGAAGTCGATTATAT---CGC-- 281
.|||||||||..|||...||..||.||||||||||||||||| |||
BL00372___his 237 AGGACAGCTTGACATTTTGATCGGTCTTGAAGTCGATTATATCCGCGCCT 286
BSNT_04313___ 282 -TGAATTTGAAGACGAAA--TTACATTATTCCTAGA-CACATACGGGCCA 327
||||..|||| |||||| | ||.||.|| || .|||||..||
BL00372___his 287 TTGAACATGAA-ACGAAAGCT-------TTTCTCGATCA-GTACGGCACA 327
BSNT_04313___ 328 TATTTAGATGACAGCATCTTATCCGTTCATTTTTTGCGCACAGACTCTTC 377
.||.|.||.|||||||||.|.||||||||||||||||...|.|..|||||
BL00372___his 328 CATCTTGACGACAGCATCCTGTCCGTTCATTTTTTGCCGGCTGGATCTTC 377
BSNT_04313___ 378 CTATCTATGCCTTGATTATGACG----AGCATACCTTCAAAG-AGCTGAT 422
.||..|.||.|||||.||.||.| |||.| ||| || |||||||
BL00372___his 378 ATACATCTGTCTTGACTACGATGAAAAAGCGT---TTC--AGCAGCTGAT 422
BSNT_04313___ 423 TTCAGCCTG---CGGAAGCATTGAAGC-GGTATAT---GAACAATATTAC 465
.|.||| |||.||||..| ||| |||.||| |...|.|||.||
BL00372___his 423 ---CGACTGCTACGGCAGCACAG-AGCAGGTTTATCTCGCCTATTATGAC 468
BSNT_04313___ 466 CGGAGTATCTATTCTTCCATTGTAGCATCTCTCGGCGTTTATAAGCCAAA 515
|| .||||||||||||||||||.||.|..|.||.|..|.|||||||||
BL00372___his 469 --GA-AATCTATTCTTCCATTGTATCACCGTTGGGAGCATTTAAGCCAAA 515
BSNT_04313___ 516 AAGAGTCGGTCACATCACACTCGTCCAAAAATTCATCAAGCTGTTTCCAT 565
|.||.||||.||||||||.||.|...|||||||..|.|||||||||||.|
BL00372___his 516 ACGAATCGGCCACATCACGCTTGCGAAAAAATTTGTGAAGCTGTTTCCGT 565
BSNT_04313___ 566 ACAGCATGTC----------AGAACATATTCGCGGCCTCGTTTCCCTGTG 605
|.|..||||| ||||.|| |||.|||.| |||||
BL00372___his 566 ATACGATGTCGGAAAGCGTTAGAAAAT-----CGGTCTCCT---CCTGT- 606
BSNT_04313___ 606 CCTGAATGCCATTGAAG----AAAA--CGGAATGGAGCTCGACTTCAATA 649
|||.| ||||| |||| ||||.|.||.||.|||||.||||
BL00372___his 607 -CTGGA------TGAAGCCGCAAAACGCGGACTTGAACTTGACTTTAATA 649
BSNT_04313___ 650 CTTCCGGCTTAAGAAAAACTTACGCTGGCGGTATTTATATCGAGGATTGG 699
|..|||||.|..|.||..||||.||.|||....|.|||||.||.||.|||
BL00372___his 650 CGGCCGGCCTCCGCAAGCCTTATGCAGGCAACGTCTATATGGAAGAATGG 699
BSNT_04313___ 700 ATGCTGAATGAAGCGAAGCAAAAGAAGATCCCGCTTGTGTTTGGGTCAGA 749
|||.|.||.||||||.|.|||||.||.|||||||||||.||||||||.||
BL00372___his 700 ATGATAAAAGAAGCGGAACAAAAAAACATCCCGCTTGTCTTTGGGTCTGA 749
BSNT_04313___ 750 TGCCCATCAAGCGGGAGATGTCGGATATGCGTATGAGGCGTTTTTGGAAC 799
.|||||.|||||.|..||||.|||||.||..||.|| .|.||||..||.|
BL00372___his 750 CGCCCACCAAGCAGAGGATGCCGGATTTGGTTACGA-ACATTTTGAGAGC 798
BSNT_04313___ 800 GG---TGCTAG---- 807
.| ||.||.
BL00372___his 799 CGCTTTGTTAAATAA 813
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