Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04324 and BL00376

See Amino acid alignment / Visit BSNT_04324 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04324___acuA.1.5803.seq
#    -bsequence dna-align/BL00376___acuA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04324___acuA-BL00376___acuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04324___acuA-BL00376___acuA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04324___acuA
# 2: BL00376___acuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 644
# Identity:     488/644 (75.8%)
# Similarity:   488/644 (75.8%)
# Gaps:          22/644 ( 3.4%)
# Score: 1817.0
# 
#
#=======================================

BSNT_04324___      1 GTGGAACATCATAAAACATACCATTCAGCAAACATCAAAACAGCA-ACC-     48
                     |||||.|||||.|||||.||.|||   ||.||    |.||..||| ||| 
BL00376___acu      1 GTGGAGCATCACAAAACTTATCAT---GCCAA----AGAATTGCAGACCG     43

BSNT_04324___     49 -----GGCTCTTTACTGATAGAAGGGCCTGTCTCTCCAGAGGATTTGGCA     93
                          ||||||.|.||||||||.||.|||.||..|||.||..|..|.|||
BL00376___acu     44 AGAAAGGCTCTGTGCTGATAGAGGGCCCTATCAGTCCCGAAAAACTCGCA     93

BSNT_04324___     94 GGTTATGAGTTTCATAAAGATTTAACCGCATTTCGCCCGCCTCGCGAGCA    143
                     |..|||||.|||||..|.||..|.||.||.||||||||..|.|...|.||
BL00376___acu     94 GAATATGAATTTCACGACGAGCTTACAGCCTTTCGCCCATCACAAAAACA    143

BSNT_04324___    144 GCATGAAGCGCTAGTCGACATTGCAGGCCTTCCCGAAGGGCGCATTATTA    193
                     .||||||||..||.||||.||.|||||.|||||||||||.||.||.||.|
BL00376___acu    144 ACATGAAGCATTAATCGAAATCGCAGGGCTTCCCGAAGGACGAATCATCA    193

BSNT_04324___    194 TTGCCAGAGATGGCCG---AACCATTATCGGCTATGTCACGTATTTATAT    240
                     |.|||.|   |..|||   |||||||.||||||||||.||.|||.|.|||
BL00376___acu    194 TCGCCCG---TTTCCGGCAAACCATTGTCGGCTATGTGACATATGTTTAT    240

BSNT_04324___    241 CCTGACCCGCTCGAAAGATGGTCTGAAGGAAATATGGAGGATTTGATTGA    290
                     ||.||||||||.||||||||||||||||||||.|||||..||||.||.||
BL00376___acu    241 CCAGACCCGCTTGAAAGATGGTCTGAAGGAAACATGGAAAATTTAATCGA    290

BSNT_04324___    291 GCTCGGAGCCATCGAAGTAGCGCCGGACTATC-GGGGATGCGCTGTCGGA    339
                     |||.||||||||||||||....|||| |..|| |.||...|.|||||||.
BL00376___acu    291 GCTTGGAGCCATCGAAGTCATTCCGG-CGTTCAGAGGTCACTCTGTCGGG    339

BSNT_04324___    340 AAGACGCTCCTGACCGTCAGCATGATGGATGAACAAATGGAAAACTACAT    389
                     ||||||||.||..|.|||||||||||||||...||.||||||||.||.||
BL00376___acu    340 AAGACGCTGCTTGCGGTCAGCATGATGGATCCGCAGATGGAAAAATATAT    389

BSNT_04324___    390 TGTGATGACGACAGAATATTACTGGCATTGGGATTTAAAAGGGATGAAAA    439
                     |.|.||.|||||.|||||||||||||||||||||.||||.||||..||.|
BL00376___acu    390 TATCATCACGACTGAATATTACTGGCATTGGGATCTAAAGGGGACTAACA    439

BSNT_04324___    440 AAGATGTGTGGGAATACAGAAAGATCATGGAAAAGATGATGAATGCAGGC    489
                     |||||||.|||||||||||||||||.|||||.||||||||||||||.||.
BL00376___acu    440 AAGATGTTTGGGAATACAGAAAGATGATGGAGAAGATGATGAATGCCGGA    489

BSNT_04324___    490 GGATTGGTCTGGTTTGCAACGGATGAGCCGGAGATCAGCTCCCACCCTGC    539
                     |||.|.|||||||||||.||.||.||.|||||.|||||||||||.||.||
BL00376___acu    490 GGACTTGTCTGGTTTGCGACAGACGATCCGGAAATCAGCTCCCATCCCGC    539

BSNT_04324___    540 AAACTGTCTGATGGCCCGCATTGGGAAAAACGTCAGCCAAGAATCAATTG    589
                     .||||||.|.|||||.|||||.||.|||.|.|||||.||.|||||.||.|
BL00376___acu    540 CAACTGTTTAATGGCACGCATCGGAAAAGAGGTCAGTCAGGAATCGATCG    589

BSNT_04324___    590 AGCAATTTGACAGGCTCCGTTTTTATCATCGTTATATGTATTAA    633
                     |||..||||||||.|||.|.||..|..||||||.||||||||||
BL00376___acu    590 AGCGTTTTGACAGACTCAGATTCCACAATCGTTTTATGTATTAA    633


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