Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04327 and BL00378

See Amino acid alignment / Visit BSNT_04327 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04327___acuC.1.5803.seq
#    -bsequence dna-align/BL00378___acuC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04327___acuC-BL00378___acuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04327___acuC-BL00378___acuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04327___acuC
# 2: BL00378___acuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1248
# Identity:     844/1248 (67.6%)
# Similarity:   844/1248 (67.6%)
# Gaps:         144/1248 (11.5%)
# Score: 2884.0
# 
#
#=======================================

BSNT_04327___      1 ATGGCCGTCAGAGCAAAGGGATCTGCTATGAGAGACAGTGTATTTATCTA     50
                                                ||||..|||||.||||||||.|.
BL00378___acu      1 ---------------------------ATGAAGGACAGCGTATTTATTTT     23

BSNT_04327___     51 TTCTCCATCCTACCAAACCTATATGTTTCATCAGGAGCATCCCTTTAATC    100
                     ||||||.||.||.|||||||||...||||||||.||.||.||.|||||||
BL00378___acu     24 TTCTCCCTCATATCAAACCTATCAATTTCATCAAGACCACCCGTTTAATC     73

BSNT_04327___    101 AGCAGCGGGTTCTGT-TAACATATGATTTGCTTAAGACGATCAATGCCTT    149
                     |||.|||.| |||.| |||||||.|||.|..|.||.|||.||...||.||
BL00378___acu     74 AGCTGCGAG-TCTATGTAACATACGATCTTTTGAACACGGTCGGCGCATT    122

BSNT_04327___    150 TGATGATGGAGA---CATTGTCACCCC-----CAGACTCGCTTCAGAAGA    191
                     |||....|||||   .||||   ||||     ||     ||..|||||..
BL00378___acu    123 TGAACCGGGAGAAACGATTG---CCCCGCGCGCA-----GCGACAGAAAC    164

BSNT_04327___    192 GGAGCTTTCCCTTGTCCACACGGACGATTACATTCA-GGCCGTAAAGCTT    240
                     .|||||....|||||.|||||||.||||||.| ||| ||||||..|||||
BL00378___acu    165 CGAGCTCGAGCTTGTTCACACGGGCGATTATA-TCAGGGCCGTCCAGCTT    213

BSNT_04327___    241 GCGGGCGCCGGAAAGCTTCCCGCTGAAGAAGGAGAAAGCTACGGGCTCGG    290
                     ||.||.||.||||||||.||.||.|..|||.|.||||.|||||||||.||
BL00378___acu    214 GCAGGGGCGGGAAAGCTCCCGGCAGCCGAAAGCGAAAACTACGGGCTTGG    263

BSNT_04327___    291 CACTGAAGACACACCCGTCTTTGCCGGCATGCACGAAGCGGCATCACTCT    340
                     .||.||.||.||.||.||.||||||||.|||||.|||||.||.||.||.|
BL00378___acu    264 AACGGAGGATACCCCTGTTTTTGCCGGGATGCATGAAGCCGCCTCCCTTT    313

BSNT_04327___    341 TGGTCGGCGGCACTTTAACGGCCGCAGACTGGGTCATGTCAG--------    382
                     ||||.|||||.||..|.|||||.|||||||..||||||.|.|        
BL00378___acu    314 TGGTAGGCGGAACGCTGACGGCTGCAGACTATGTCATGACGGGCAAAGCT    363

BSNT_04327___    383 -GACAAGCCCTGCATGCGGCAAACCTTGGCGGAGGGCTTCATCACGGCTT    431
                      ||||.|||||         .||.|||||.||.||||||||.|||||.||
BL00378___acu    364 AGACACGCCCT---------CAATCTTGGAGGCGGGCTTCACCACGGGTT    404

BSNT_04327___    432 TCGTGGGAGAGCTTCAGGGTTTTGCATATATAATGACAGCGCTGTGGCGA    481
                     ..|.||.||.||||||||.||||||.|.|||||||||||..|.||.|.||
BL00378___acu    405 CAGAGGAAGGGCTTCAGGCTTTTGCGTCTATAATGACAGTTCAGTTGTGA    454

BSNT_04327___    482 TTCAATATATCCAGAAAAAATACAGATCCAGG-----GTACTTTATATTG    526
                     |.|..||..|.|||||||||||     .||.|     ||..|.|||||||
BL00378___acu    455 TACGTTACTTGCAGAAAAAATA-----TCATGCGAAAGTTTTATATATTG    499

BSNT_04327___    527 ATACCGACGCCCACCACGGGGACGGTGTGCAATTTACCTTTTACGATAAT    576
                     ||||.||||||||.|||||.|||||.|||||.|||||.||.||.|||.||
BL00378___acu    500 ATACAGACGCCCATCACGGCGACGGGGTGCAGTTTACGTTCTATGATGAT    549

BSNT_04327___    577 CCTGACGTATGCACGCTGTCCATTCATGAAACAGGAAGGTATTTATTCCC    626
                     |||..|||.|||||..|.||.||.|||||||||||..|.||..|||||||
BL00378___acu    550 CCTTCCGTCTGCACCGTCTCGATACATGAAACAGGCCGCTACCTATTCCC    599

BSNT_04327___    627 TGGAACCGGTCAGATCCAAGAAAAAGG-CA--GCGGAAAAGGATATGGCT    673
                     .|||||.||.|||.|.||.||||.||| ||  |||   ||||.||.||||
BL00378___acu    600 GGGAACGGGGCAGGTTCAGGAAAGAGGTCATGGCG---AAGGCTACGGCT    646

BSNT_04327___    674 ATTCCTTTAATATCCCGCTTGACGCTTTTACAGAGGATGATTCTTTTCTT    723
                     ||.|.||||||||||||||.||.||.||.|||||.|||||.|||||||||
BL00378___acu    647 ATGCTTTTAATATCCCGCTCGATGCCTTCACAGAAGATGAGTCTTTTCTT    696

BSNT_04327___    724 GAGGCTTACCGGACAGCAGCTTCAGAAGTCGCCGCTTATTTCAAGCCCGA    773
                     ||..|.||||||||.||.|.|||.|||.|.||||..|.||||||.||.||
BL00378___acu    697 GATTCCTACCGGACGGCTGTTTCTGAAATAGCCGAGTTTTTCAAACCGGA    746

BSNT_04327___    774 TGTCATTATCAGCCAAAACGGCGCCGATGCCCATTACTACGACCCGCTGA    823
                     |||||||.|....||||||||.||.||.||.|||||||||||.|||||||
BL00378___acu    747 TGTCATTTTGTCGCAAAACGGAGCTGACGCACATTACTACGATCCGCTGA    796

BSNT_04327___    824 CGCATTTATCAGCA--ACAATCAATATATACGAAGAAATCCC--------    863
                     |.||.||.|  |||  ||.||.||.||.||||||||.||.||        
BL00378___acu    797 CACACTTGT--GCACGACGATGAAGATTTACGAAGAGATTCCAAAGCTCG    844

BSNT_04327___    864 ----CCGTCTTGCACACACTTTGGCTCATCAATATTGCGGAGGGAAATGG    909
                         |...|||||||||||            .||||||.|.||.|.||||
BL00378___acu    845 CTCACGAACTTGCACACAC------------CTATTGCAGCGGAAGATGG    882

BSNT_04327___    910 ATTGCAGTCGGAGGCGGCGGATATGATATTTGGCGCGTCGTGCCCCGCGC    959
                     ||.||.|||||.||.|||||.||.||.||||||||||||||.||..|.||
BL00378___acu    883 ATCGCTGTCGGCGGAGGCGGCTACGACATTTGGCGCGTCGTACCGAGGGC    932

BSNT_04327___    960 CTGGGCCAGAATATGGCTTGAAATGAAGGGAATTGACCCGGGACACGAGA   1009
                     .|||||.|||||.||||||||||||||.||.||.||.||   |.|.||||
BL00378___acu    933 ATGGGCAAGAATCTGGCTTGAAATGAAAGGGATGGAACC---AGAGGAGA    979

BSNT_04327___   1010 TCCCGCCGGAATGGATTGCTAAATGGCAAAAACAATGCCCCG--------   1051
                     ....|||.|||         |||||||..|||.||||    |        
BL00378___acu    980 AAATGCCTGAA---------AAATGGCTGAAAAAATG----GGGGAAACA   1016

BSNT_04327___   1052 ------TGGCC--CTTCCGTCGAGCTGGAGCGATCCGGCTGATTTATATC   1093
                           ||.||  |||||..|.|.||||..|||.||||..|||||.||||
BL00378___acu   1017 GGCATCTGTCCGGCTTCCTGCCAACTGGTCCGACCCGGAAGATTTGTATC   1066

BSNT_04327___   1094 CTCCGATTCCCCGCAAGCCTGAAATTACAGAAAAAAATGCCCAAACTGTC   1143
                     ||||.|||||..|.||..|.|||||.||.||||||||.||.|||||.||.
BL00378___acu   1067 CTCCAATTCCAAGAAAAACCGAAATAACGGAAAAAAACGCACAAACCGTT   1116

BSNT_04327___   1144 AGCAAAGCATTATATGCGATACGTTCTGAACAGCAAAGAACAAAGTAA   1191
                     ..||||||..|.|||.||||.||.||||..||||   |.||.|..|||
BL00378___acu   1117 GCCAAAGCCCTTTATCCGATTCGCTCTGCCCAGC---GTACCACTTAA   1161


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