Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04235 and BL00388
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:20
# Commandline: needle
# -asequence dna-align/BSNT_04235___nrdR.1.5803.seq
# -bsequence dna-align/BL00388___nrdR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04235___nrdR-BL00388___nrdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04235___nrdR-BL00388___nrdR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04235___nrdR
# 2: BL00388___nrdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 460
# Identity: 357/460 (77.6%)
# Similarity: 357/460 (77.6%)
# Gaps: 2/460 ( 0.4%)
# Score: 1361.0
#
#
#=======================================
BSNT_04235___ 1 TTGAAATGTCCTTCATGCCAGCATAACGGAACACGAGTCCTTGATTCACG 50
.||||||||||..||||.||||||||.||.||..|.||..|.||.||.||
BL00388___nrd 1 ATGAAATGTCCAGCATGTCAGCATAATGGGACGAGGGTTTTGGACTCCCG 50
BSNT_04235___ 51 GCCTGTGGATGACGGAAAGTCGATTCGCCGAAGACGCGAGTGCGAATCCT 100
.||.||.||.||.||.|..|||||||||.||||||||||.||||||||.|
BL00388___nrd 51 TCCGGTTGACGAAGGCAGATCGATTCGCAGAAGACGCGAATGCGAATCGT 100
BSNT_04235___ 101 GCCACTACCGGTTTACGACCTTTGAGAAAGTGGAGGAAACCCCGCTCATC 150
||.||||.||.|||||.||.|||||.||||||||.||||..|||||||||
BL00388___nrd 101 GCAACTATCGATTTACTACATTTGAAAAAGTGGAAGAAATTCCGCTCATC 150
BSNT_04235___ 151 GTTGTGAAAAAAGAAGGTGTGCGTGAGGAATTCAGCAGAGAAAAAATGCT 200
||.||.|||||||||||..|.||.||.|||||||||.|.||.||||||||
BL00388___nrd 151 GTCGTAAAAAAAGAAGGAATCCGGGAAGAATTCAGCCGCGAGAAAATGCT 200
BSNT_04235___ 201 GCGCGGCCTCATAAAAGCATGTGGAAAAAGGCCTGTTTCACTCAAAAC-G 249
.|||||..|.||.|||||.||.|.|||..|.|||||..| ||..||.| |
BL00388___nrd 201 CCGCGGTTTGATCAAAGCGTGCGAAAAGCGCCCTGTCGC-CTTGAAGCAG 249
BSNT_04235___ 250 CTTGAAGACATGTGCTTTGATATTGAAAAAGAACTTCGCAATCAAGGCTG 299
|||||.||.||.||||||||.|||||||||||.|||.|.|||||||||..
BL00388___nrd 250 CTTGAGGATATTTGCTTTGAAATTGAAAAAGAGCTTAGAAATCAAGGCGT 299
BSNT_04235___ 300 CTCCGAGGTGAAGAGTGAGCTCGTCGGAGAAATGGTCATGGACCGGCTGG 349
.||.||.||||||||.||..|..|||||||||||||.||||||.||||.|
BL00388___nrd 300 TTCTGAAGTGAAGAGCGACATGATCGGAGAAATGGTGATGGACAGGCTTG 349
BSNT_04235___ 350 CTAAGATTGACGAAGTCGCATATGTGCGGTTCGCGTCCGTCTATCGGCAG 399
|.||.||.|||||||||||||||||.||.||.||.||.||.||.||.||.
BL00388___nrd 350 CGAAAATCGACGAAGTCGCATATGTCCGATTTGCTTCAGTATACCGCCAA 399
BSNT_04235___ 400 TTTAAAGATATAAACGTCTTTATCGATGAATTAAAAGACTTAATAAAGAA 449
|||||||||||.|||||.||||||||.||..|.|||||.|||||||||||
BL00388___nrd 400 TTTAAAGATATTAACGTATTTATCGACGAGCTGAAAGATTTAATAAAGAA 449
BSNT_04235___ 450 AGAGCGTTAA 459
|||.||.|||
BL00388___nrd 450 AGAACGGTAA 459
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