Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04253 and BL00398
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04253___icd.1.5803.seq
# -bsequence dna-align/BL00398___icd.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04253___icd-BL00398___icd.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04253___icd-BL00398___icd.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04253___icd
# 2: BL00398___icd
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 1058/1281 (82.6%)
# Similarity: 1058/1281 (82.6%)
# Gaps: 18/1281 ( 1.4%)
# Score: 4394.5
#
#
#=======================================
BSNT_04253___ 1 GTGGCACAAGGTGAAAAAATTACAGTCTCTAACGGAGTATTAAACGTACC 50
|||||||||||.|||||||||||||||||...|||||||||||||||.||
BL00398___icd 1 GTGGCACAAGGCGAAAAAATTACAGTCTCCGGCGGAGTATTAAACGTTCC 50
BSNT_04253___ 51 AAACAACCCGATTATCCCATTTATCGAAGGAGACGGAACTGGTCCTGATA 100
||||||||||.|.|||||.|||||.|||||.||||||||.||||||||||
BL00398___icd 51 AAACAACCCGGTCATCCCGTTTATTGAAGGGGACGGAACAGGTCCTGATA 100
BSNT_04253___ 101 TTTGGAACGCGGCTTCGAAGGTTTTAGAAGCAGCAGTAGAAAAAGCATAC 150
||||||..||||||||.|.||||.|.|||||.||.||.||.|||||.||.
BL00398___icd 101 TTTGGAGAGCGGCTTCCAGGGTTCTTGAAGCGGCTGTGGAGAAAGCGTAT 150
BSNT_04253___ 151 AAAGGCGAAAAGAAAATTACATGGAAAGAAGTTTACGCCGGAGAAAAGGC 200
||.||||||||||||||.||.|||||||||||.||||||||.|||||.||
BL00398___icd 151 AACGGCGAAAAGAAAATCACTTGGAAAGAAGTCTACGCCGGGGAAAAAGC 200
BSNT_04253___ 201 TTATAATAAAACAGGTGAGTGGCTCCCTGCTGAAACATTAGATGTGATCC 250
.||.||.|||||.||.||.|||||.||.|..|||||..|.|||..|||||
BL00398___icd 201 GTACAACAAAACCGGCGAATGGCTTCCGGAAGAAACGCTTGATACGATCC 250
BSNT_04253___ 251 GCGAATATTTCATCGCGATTAAAGGCCCGTTAACGACACCTGTCGGCGGC 300
|||||||..|.||||||||||||||.||.|||||.||.|||||.|||||.
BL00398___icd 251 GCGAATACCTGATCGCGATTAAAGGTCCTTTAACAACTCCTGTAGGCGGG 300
BSNT_04253___ 301 GGTATCCGTTCTTTGAACGTAGCGCTCAGACAAGAGCTTGACCTATT--- 347
||.|||||.||.||.|||||||||||||||||||||||||||.|.||
BL00398___icd 301 GGAATCCGCTCATTAAACGTAGCGCTCAGACAAGAGCTTGACTTGTTTAC 350
BSNT_04253___ 348 -CGTCTGCTTAAGACCTGTAAGATACTTTACTGGAGTGCCGTCACCGGTA 396
.|.|||| |.|||||..|.||.||.||.||.||.||.||||||||.
BL00398___icd 351 ATGCCTGC----GTCCTGTCCGCTATTTCACAGGCGTTCCTTCACCGGTT 396
BSNT_04253___ 397 AAACGCCCTGAAGATACTGATATGGTCATCTTCCGTGAAAATACAGAAGA 446
||.||||||||||||||.||.|||||||||||||||||.|||||.|||||
BL00398___icd 397 AAGCGCCCTGAAGATACGGACATGGTCATCTTCCGTGAGAATACTGAAGA 446
BSNT_04253___ 447 TATTTACGCAGGCATCGAGTATGCAAAAGGCTCTGAAGAAGTGCAAAAGC 496
|||.|||||.|||||||||||.||.|||||||||||||||||||||||||
BL00398___icd 447 TATCTACGCCGGCATCGAGTACGCGAAAGGCTCTGAAGAAGTGCAAAAGC 496
BSNT_04253___ 497 T--TATCAGCTTCCTTCAAAATGAGTTAAACGTCAATAAAATCCGTTTCC 544
| |.||| |||||..||||.|||.|...|||.||.||||||||.||||
BL00398___icd 497 TGATTTCA--TTCCTGAAAAACGAGCTTGGCGTTAACAAAATCCGCTTCC 544
BSNT_04253___ 545 CTGAGACATCAGGTATCGGCATTAAGCCTGTTTCAGAAGAAGGAA---CA 591
||||.|||||.||.||||||||.|||||.|||||.|||||||||| ||
BL00398___icd 545 CTGAAACATCGGGCATCGGCATCAAGCCGGTTTCTGAAGAAGGAACATCA 594
BSNT_04253___ 592 AGCCGCTTGGTCAGAGCTGCCATTGATTATGCGATCGAGCATGGCCGCAA 641
|| |||| |||||||||||.||.||.||||||||||||||.||||||||
BL00398___icd 595 AG--GCTT-GTCAGAGCTGCGATCGAGTATGCGATCGAGCACGGCCGCAA 641
BSNT_04253___ 642 ATCTGTAACGCTTGTTCACAAAGGAAACATCATGAAGTTCACAGAAGGCG 691
||||||.|||||.||.||.|||||||||||||||||.|||||.|||||||
BL00398___icd 642 ATCTGTGACGCTCGTCCATAAAGGAAACATCATGAAATTCACGGAAGGCG 691
BSNT_04253___ 692 CGTTCAAAAACTGGGGCTATGAACTTGCTGAAAAAGAATACGGAGATAAA 741
|.||.||||||||||||||||||.|.|||||||||||||.|||.||||||
BL00398___icd 692 CCTTTAAAAACTGGGGCTATGAAGTGGCTGAAAAAGAATTCGGCGATAAA 741
BSNT_04253___ 742 GTCTTCACATGGGCTCAATATGACCGCATTGCTGAAGAAGAAGGAAAAGA 791
||.|||||.|||||..||||.||||||||.||||||.||||.||.|||||
BL00398___icd 742 GTATTCACTTGGGCCGAATACGACCGCATCGCTGAAAAAGACGGCAAAGA 791
BSNT_04253___ 792 CGCTGCCAACAAAGCGCAAAGCGAAGCGGAAGCAGCAGGAAAAATCATTA 841
||||||.||||||||||||||||||||.|||||.||.||.||||||||.|
BL00398___icd 792 CGCTGCAAACAAAGCGCAAAGCGAAGCTGAAGCTGCCGGCAAAATCATCA 841
BSNT_04253___ 842 TCAAAGACAGCATTGCTGACATTTTCCTTCAGCAGATCTTAACGCGTCCA 891
|||||||||||||.||.|||||.|||||.||||||||..|.||.|||||.
BL00398___icd 842 TCAAAGACAGCATCGCCGACATCTTCCTGCAGCAGATTCTGACACGTCCT 891
BSNT_04253___ 892 AACGAGTTTGATGTCGTTGCGACAATGAACTTGAACGGAGATTACATTTC 941
..|||||||||.||.||.||||||||||||.|||||||.||.||||||||
BL00398___icd 892 GCCGAGTTTGACGTTGTGGCGACAATGAACCTGAACGGGGACTACATTTC 941
BSNT_04253___ 942 TGATGCTCTTGCTGCGCAAGTCGGCGGAATCGGCATTGCTCCTGGAGCGA 991
.|||||.||.|||||.||||||||||||||||||||.||.||||||||.|
BL00398___icd 942 AGATGCGCTGGCTGCCCAAGTCGGCGGAATCGGCATCGCACCTGGAGCAA 991
BSNT_04253___ 992 ACATCAACTACGAAACAGGACATGCGATTTTCGAGGCGACGCACGGAACG 1041
||||||||||.||.|||||||||||.||.||.||||||||.||.||.||.
BL00398___icd 992 ACATCAACTATGAGACAGGACATGCCATCTTTGAGGCGACACATGGTACA 1041
BSNT_04253___ 1042 GCTCCTAAATATGCAGGCCTTGATAAAGTAAACCCATCTTCAGTTATTCT 1091
||.||||||||.||.|||||.||.|||||||||||.||||||||.||.||
BL00398___icd 1042 GCGCCTAAATACGCCGGCCTCGACAAAGTAAACCCGTCTTCAGTCATCCT 1091
BSNT_04253___ 1092 TTCAGGCGTTCTGCTTCTTGAGCATTTAGGATGGAACGAAGCGGCTGATT 1141
.||.|||||.|||||||||||||||||.||.|||||.||.|||||.||..
BL00398___icd 1092 ATCCGGCGTGCTGCTTCTTGAGCATTTGGGCTGGAATGAGGCGGCCGACC 1141
BSNT_04253___ 1142 TGGTTATCAAATCTATGGAAAAAACAATCGCTTCCAAAGTCGTAACTTAC 1191
|.||.||.|||||.|||||.|||||||||||.|||||||||||.||.|||
BL00398___icd 1142 TTGTCATTAAATCAATGGAGAAAACAATCGCATCCAAAGTCGTCACATAC 1191
BSNT_04253___ 1192 GATTTTGCCAGATTAATGGACGGGGCGACTGAAGTGAAATGTTCAGAGTT 1241
|||||.||..|.||.||||||||.|||||||||||.|||||.||.||.||
BL00398___icd 1192 GATTTCGCTCGTTTGATGGACGGCGCGACTGAAGTCAAATGCTCTGAATT 1241
BSNT_04253___ 1242 CGGAGAAGAACTGATCAAAAACATGGACTAA 1272
|||.||.||.||.||||||||||||...|||
BL00398___icd 1242 CGGTGATGAGCTTATCAAAAACATGTCTTAA 1272
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