Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04254 and BL00399
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04254___citZ.1.5803.seq
# -bsequence dna-align/BL00399___citZ.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04254___citZ-BL00399___citZ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04254___citZ-BL00399___citZ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04254___citZ
# 2: BL00399___citZ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1132
# Identity: 868/1132 (76.7%)
# Similarity: 868/1132 (76.7%)
# Gaps: 26/1132 ( 2.3%)
# Score: 3261.0
#
#
#=======================================
BSNT_04254___ 1 ATGACAGCGACACGCGGTCTTGAAGGGGTTGTAGCAACAACATCATCTGT 50
||||||||.||||||||.|||||||||||.||.||.||.||||||||.||
BL00399___cit 1 ATGACAGCAACACGCGGCCTTGAAGGGGTAGTCGCCACTACATCATCAGT 50
BSNT_04254___ 51 TAGTTCTATTATTGATGATACCCTTACATATGTGGGGTATGATATCGATG 100
.|||||.||||||||||||||.|||||||||||.||||||.|.|||||||
BL00399___cit 51 AAGTTCAATTATTGATGATACTCTTACATATGTAGGGTATAACATCGATG 100
BSNT_04254___ 101 ATTTGACAGAGAATGCAAGTTTTGAAGAAATCATCTACTTGCTTTGGCAT 150
||||||||||.||.||.||.|||||||||.|..|.||..|||||||||||
BL00399___cit 101 ATTTGACAGAAAAAGCTAGCTTTGAAGAAGTTGTTTATCTGCTTTGGCAT 150
BSNT_04254___ 151 CTAAGGCTGCCAAACAAAAAAGAGCTTGAAGAG-TTAAAGCAGCAGCTTG 199
.|||.||||||.||||||.|.|||||||..||| ||||| .|.||||||.
BL00399___cit 151 TTAAAGCTGCCGAACAAAGAGGAGCTTGCCGAGCTTAAA-AAACAGCTTT 199
BSNT_04254___ 200 CAAAGGAAGCTGCCG---TTCCGCAAGAAATTATTGAGCACTTCAAATCT 246
| .|||..||||| |.||..|||||.|.|||||.||.||||||||.
BL00399___cit 200 C---TGAAAATGCCGGTATCCCCAAAGAAGTCATTGACCATTTCAAATCC 246
BSNT_04254___ 247 TATTCCC---TCGAAAATGTTCATCCCATGGCTGCTCTTCGGACAGCAAT 293
|| ||| |.||||| ||.||.||.|||||.||||||||||||||..|
BL00399___cit 247 TA--CCCGAATGGAAAA-GTCCACCCGATGGCAGCTCTTCGGACAGCCGT 293
BSNT_04254___ 294 TTCATTACTAGGCCTGCTTGACAGCGAGGCTGATACCATGAACCCGGAAG 343
|||.|||||.||.|||.|||||...||.||.|||...|||.|..||||||
BL00399___cit 294 TTCTTTACTCGGGCTGTTTGACGAAGAAGCAGATCAAATGGATGCGGAAG 343
BSNT_04254___ 344 CCAACTACAGAAAGGCGATCCGCCTTCAGGCAAAGGTGCCTGGCCTGGTT 393
|.|||||||||||.|||.|.||.||.||.||.|||.||||||..||.||.
BL00399___cit 344 CAAACTACAGAAAAGCGGTGCGTCTCCAAGCGAAGATGCCTGCGCTTGTC 393
BSNT_04254___ 394 GCAGCGTTTTCCAGAATTCGCAGGGGTCTTGAGCCTGTTGAACCGA---- 439
||.||.|||||.|||||.||||..||.||||||||..||||.||||
BL00399___cit 394 GCTGCTTTTTCAAGAATCCGCAAAGGGCTTGAGCCGATTGAGCCGAATCC 443
BSNT_04254___ 440 -GAGAAGATTACGGTATTGCGGAGAATTTTCTTTACACATTAAACGGTGA 488
|| |.| |||..||||.|..||.|||||.||||...|.||.||..|
BL00399___cit 444 GGA----ACT-CGGCTTTGCAGCCAACTTTCTCTACATGCTGAATGGAAA 488
BSNT_04254___ 489 AGAGCCTTCACCAATTGAGGTTGAAGCCTTCAACAAAGCATTGATTTTAC 538
|||.||||||||..|.||.||.|||||.||..|||||||.|||||..|.|
BL00399___cit 489 AGAACCTTCACCTGTCGAAGTGGAAGCGTTTGACAAAGCTTTGATCCTTC 538
BSNT_04254___ 539 ATGCTGACCATGAGTTGAACGCGTCAACGTTCACAGCGAGGGTCTGCGTC 588
||||.||.||||||.|||||||.||.|||||||||||.||.||.||||||
BL00399___cit 539 ATGCGGATCATGAGCTGAACGCATCTACGTTCACAGCCAGAGTATGCGTC 588
BSNT_04254___ 589 GCAACACTTTCTGACATCTATTCAGGCATTACTGCAGCAATCGGCGCGCT 638
||.||.|||||.|||.|.||.|||||.||.||.||.||||||||.||..|
BL00399___cit 589 GCGACGCTTTCAGACGTTTACTCAGGGATAACGGCCGCAATCGGAGCCTT 638
BSNT_04254___ 639 GAAAGGGCCTCTTCACGGAGGAGCGAATGAAGGCGTTATGAAAATGCTGA 688
||||||.||.||||||||.|||||.||.||||..||||||||||||||..
BL00399___cit 639 GAAAGGTCCGCTTCACGGCGGAGCAAACGAAGCAGTTATGAAAATGCTTT 688
BSNT_04254___ 689 CAGAAATCGGTGAAGTGGAAAACGCTGAGCCGTACATCCGCGCTAAACTT 738
||||.||.||.||.||.|||||||..||..|.||.||.|.|||.||.|||
BL00399___cit 689 CAGAGATTGGCGAGGTTGAAAACGTAGATTCATATATTCACGCCAAGCTT 738
BSNT_04254___ 739 GAAAAGAAAGAAAAAATCATGGGATTCGGCCACCGTGTGTATAAGCATGG 788
||||||||||||||.||||||||.|||||||||||.||.||....||.||
BL00399___cit 739 GAAAAGAAAGAAAAGATCATGGGGTTCGGCCACCGCGTATACCGCCAGGG 788
BSNT_04254___ 789 TGATCCGCGCGCGAAGCATCTGAAAGAAATGAGCAAGCGCCTGACCAACC 838
.|||||.|||||.||.|||.||||.||||||||||.|||..||||.||..
BL00399___cit 789 CGATCCCCGCGCAAAACATTTGAAGGAAATGAGCAGGCGTTTGACGAATT 838
BSNT_04254___ 839 TGACAGGCGAAAGCAAATGGTATGAGATGTC-GATTCGTATAGAAGACAT 887
|.||.||.||||||||||||||||||||.|| || .||.|..||.||.||
BL00399___cit 839 TAACGGGTGAAAGCAAATGGTATGAGATTTCAGA-GCGGACTGAGGAAAT 887
BSNT_04254___ 888 CGTCACATCAGAGAAAAAGCTTCCGCCTAACGTTGATTTCTATTCGGCTT 937
||||||.||..||||||||||.|||||.|||||.||.||.|||||.||.|
BL00399___cit 888 CGTCACGTCTCAGAAAAAGCTGCCGCCAAACGTAGACTTTTATTCTGCGT 937
BSNT_04254___ 938 CTGTATATCACAGCCTCGGTATTGACCATGATTTGTTTACACCGATTTTT 987
|.||.|||||.|||.|.||.||.|||||||||.|||||||.|||||||||
BL00399___cit 938 CGGTTTATCATAGCTTAGGAATCGACCATGATCTGTTTACGCCGATTTTT 987
BSNT_04254___ 988 GCTGTAAGCAGAATGTCCGGCTGGCTCGCTCATATTCTTGAGCAGTATGA 1037
||..|.|||||..|.||.||||||||||||||.||||||||.||||||||
BL00399___cit 988 GCGATCAGCAGGGTATCAGGCTGGCTCGCTCACATTCTTGAACAGTATGA 1037
BSNT_04254___ 1038 CAACAACCGTCTGATCCGCCCGCGGGCAGATTACACAGGCCCTGACAAAC 1087
.||.|||||.|||||.||.||||||||.||.|||||.||||||||||..|
BL00399___cit 1038 AAATAACCGCCTGATTCGTCCGCGGGCTGACTACACCGGCCCTGACATGC 1087
BSNT_04254___ 1088 AAAAATTCGTTCCGATTGAAGAAAGAGCCTAA 1119
|.|..|||.|||||||||||||||||..||.|
BL00399___cit 1088 AGAGGTTCATTCCGATTGAAGAAAGAAGCTGA 1119
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