Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04263 and BL00402

See Amino acid alignment / Visit BSNT_04263 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04263___pyk.1.5803.seq
#    -bsequence dna-align/BL00402___pyk.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04263___pyk-BL00402___pyk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04263___pyk-BL00402___pyk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04263___pyk
# 2: BL00402___pyk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1780
# Identity:    1352/1780 (76.0%)
# Similarity:  1352/1780 (76.0%)
# Gaps:          44/1780 ( 2.5%)
# Score: 5040.5
# 
#
#=======================================

BSNT_04263___      1 ATGAGAAAAACTAAAATTGTTTGTACCATCGGTCCGGCAAGTGAAAGTAT     50
                     ||||||||.||||||||.||||||||.||.||.|||||.||.||||||.|
BL00402___pyk      1 ATGAGAAAGACTAAAATAGTTTGTACAATTGGACCGGCCAGCGAAAGTGT     50

BSNT_04263___     51 TGAAATGCTTACGAAATTAATGGAGTCAGGAATGAACGTGGCTCGATTAA    100
                     |||||.|||.||..|..|.|||||..|.||||||||||||||.||..|.|
BL00402___pyk     51 TGAAAAGCTCACCCAGCTGATGGAAGCCGGAATGAACGTGGCGCGCCTGA    100

BSNT_04263___    101 ACTTTTCTCACGGAGATTTTGAGGAACACGGTGCAAGAATTAAAAATATC    150
                     |||||||.||.||||||||.||.||.|||||.||||||||||||||.||.
BL00402___pyk    101 ACTTTTCCCATGGAGATTTCGAAGAGCACGGCGCAAGAATTAAAAACATT    150

BSNT_04263___    151 CGCGAA-------GCAAGTAAAAAACTTGGCAAGAACGTTGGAATTCTGC    193
                     ||.|||       |||||       ||.||.||..|..|.||.||.||.|
BL00402___pyk    151 CGTGAAGCAGCCGGCAAG-------CTGGGAAAAGATATCGGCATCCTTC    193

BSNT_04263___    194 TTGATACAAAAGGTCCTGAAATCCGCACACATACAATGGAAAACGG--CG    241
                     ||||.||.|||||.||||||||||||||.||.||||||||||||||  ||
BL00402___pyk    194 TTGACACGAAAGGGCCTGAAATCCGCACGCACACAATGGAAAACGGTTCG    243

BSNT_04263___    242 GTATTGAGCTTGAAACAGGCAAAG-------AGCTCATTATTTCAATGGA    284
                       ||.|       |||.||||..|       ||||.||..||||||||||
BL00402___pyk    244 --ATCG-------AACTGGCAGCGGGTTCTCAGCTGATCGTTTCAATGGA    284

BSNT_04263___    285 CGAGGTTGTAGGAACAACAGATAAAATTTCAGTGACATATGAAGGTTTAG    334
                     |||.||..|.||.||..|.||||||||.|||||.||||||||.||.||..
BL00402___pyk    285 CGAAGTCATCGGTACGCCTGATAAAATCTCAGTTACATATGATGGGTTGA    334

BSNT_04263___    335 TCCATGACGTTGAACAAGGTTCAACGATTCTGTTAGATGACGGCCTTATC    384
                     |.||.||.||...|...||||||||||||.||.|.||.||.||..|..||
BL00402___pyk    335 TTCACGATGTGTCAGTCGGTTCAACGATTTTGCTTGACGATGGATTGGTC    384

BSNT_04263___    385 GGTCTTGAGGT-ACTTGATGTAGATGCCGCTAAACGCGAAATCAAAACAA    433
                     ||.|||||.|| || |||..||.|....|..||.||.||||||...||.|
BL00402___pyk    385 GGACTTGAAGTCAC-TGACATAAACAAGGACAAGCGTGAAATCGTCACGA    433

BSNT_04263___    434 AAGTATTAAACAACGGAACACTCAAAAATAAAAAAGGTGTTAACGTACCG    483
                     ||||..|.||||.||||||..|.|||||.||||||||.||.||.||.|||
BL00402___pyk    434 AAGTGATGAACAGCGGAACGTTGAAAAACAAAAAAGGCGTGAATGTGCCG    483

BSNT_04263___    484 GGCGTAAGTGTCAATCTTCCGGGTATTACTGAAAAGGATGCGCGAGACAT    533
                     |||||.||.||||||||||||||.|||||.|||||.|||||....|||||
BL00402___pyk    484 GGCGTCAGCGTCAATCTTCCGGGAATTACGGAAAAAGATGCAAACGACAT    533

BSNT_04263___    534 CGTTTTCGGTATTGAGCAAGGAGTAGACTTCATCGCACCATCTTTCATTC    583
                     |||.|||||.||.|||||.||.||.||.||||||||..||||.||..|.|
BL00402___pyk    534 CGTATTCGGCATCGAGCAGGGCGTTGATTTCATCGCGGCATCCTTTGTGC    583

BSNT_04263___    584 GACGTTCTACGGATGTGCTCGAAATCCGTGAGCTTCTTGAAGAGCACAAC    633
                     |.|||.|..|||||||.||.||||||||.||.|||||||||||||||||.
BL00402___pyk    584 GCCGTCCGTCGGATGTCCTTGAAATCCGCGAACTTCTTGAAGAGCACAAT    633

BSNT_04263___    634 GC-TCAGGAAATTCAAATCATCCCTAAAATCGAAAACCAAGAGGGCGTTG    682
                     || .|| ||.|||||||||||.||.||||||||||||||.||.|||||||
BL00402___pyk    634 GCGGCA-GATATTCAAATCATTCCAAAAATCGAAAACCAGGAAGGCGTTG    682

BSNT_04263___    683 ACAACATCGATGCGATTCTCGAAGTGTCTGACGGCTTAATGGTTGCACGC    732
                     |||||||||||||.|||||.|||||.||.|||||..|.||||||||.||.
BL00402___pyk    683 ACAACATCGATGCCATTCTTGAAGTATCAGACGGTCTGATGGTTGCGCGT    732

BSNT_04263___    733 GGAGACTTAGGTGTGGAAATTCCAGCTGAAGAAGTGCCGCTTGTGCAAAA    782
                     ||||||.|.|||||.|||||.||.||.||||||||||||||.||.|||||
BL00402___pyk    733 GGAGACCTGGGTGTAGAAATCCCTGCCGAAGAAGTGCCGCTCGTTCAAAA    782

BSNT_04263___    783 AGAACTGATCAAAAAATGCAACGCGCTGGGCAAACCTGTTATTACAGCAA    832
                     |||||||||||||||||||||.|||||.|||||.|||||.||.||.||.|
BL00402___pyk    783 AGAACTGATCAAAAAATGCAATGCGCTTGGCAAGCCTGTCATCACGGCTA    832

BSNT_04263___    833 CACAAATGCTTGACAGCATGCAGCGCAACCCGCGTCCGACTCGTGCGGAA    882
                     |.||||||||.|||||||||||||||||.|||||.|||||.||.||||||
BL00402___pyk    833 CCCAAATGCTCGACAGCATGCAGCGCAATCCGCGCCCGACACGCGCGGAA    882

BSNT_04263___    883 GCAAGTGACGTTGCAAACGCGATCTTCGACGGAACAGATGCGATCATGCT    932
                     ||.||.||||||||.||.||||||||.||||||||.||.||.||||||||
BL00402___pyk    883 GCGAGCGACGTTGCCAATGCGATCTTTGACGGAACTGACGCAATCATGCT    932

BSNT_04263___    933 TTCTGGTGAAACTGCTGCCGGAAGTTATCCGGTTGAAGCAGTTCAAACAA    982
                     |||.||||||||.||.||.||||.||||||.||||||||.|||||.||.|
BL00402___pyk    933 TTCAGGTGAAACGGCAGCGGGAAATTATCCTGTTGAAGCCGTTCAGACGA    982

BSNT_04263___    983 TGCATAACATCGCGTCCCGTTCTGAAGAAGCGTTAAATTATAAAGAAATT   1032
                     ||||.||.|||||.||||||||.|||||||||.|.||..|||||.|.||.
BL00402___pyk    983 TGCACAATATCGCTTCCCGTTCAGAAGAAGCGCTCAACCATAAAAAGATC   1032

BSNT_04263___   1033 CTCTCAAAACGCAGAGATCAAGTTGGCATGACAATTACAGACGCAATTGG   1082
                     ||.||...|||.||..|.|||||..|||||.|||||||.||.||.||.||
BL00402___pyk   1033 CTTTCCGCACGAAGCAAGCAAGTCAGCATGTCAATTACGGATGCGATCGG   1082

BSNT_04263___   1083 ACAATCTGTCGCACATACGGCGATTAACCTGAATGCTG-CTGCGATCGTA   1131
                     .||||||||.||.||||||||.||.|||||..||| || .|||.|||||.
BL00402___pyk   1083 CCAATCTGTGGCGCATACGGCAATCAACCTTGATG-TGAATGCCATCGTC   1131

BSNT_04263___   1132 ACGCCGACAGAAAGCGGCCATACAGCACGTATGATTGCAAAATACCGTCC   1181
                     ||.|||||.||||||||||||||.||..|.||||||.|.|||||.||.||
BL00402___pyk   1132 ACACCGACGGAAAGCGGCCATACGGCGAGAATGATTTCCAAATATCGCCC   1181

BSNT_04263___   1182 GCAGGCTCCGATTGTTGCGGTTACTGTAAATGACTCTATTTCCAGAAAGC   1231
                     ||||||.||||||||.||.|||||.|||||.||..|..|.||.|||||||
BL00402___pyk   1182 GCAGGCGCCGATTGTCGCAGTTACGGTAAACGATGCGGTGTCAAGAAAGC   1231

BSNT_04263___   1232 TTGCCCTCGTATCTGGCGTATTCGCGGAAAGCGGCCAAAATGCGAGCTCA   1281
                     |..|.||.||.|..||.||.|||||...||||||.|||||....|||||.
BL00402___pyk   1232 TGTCACTTGTGTTCGGGGTTTTCGCAACAAGCGGACAAAACCACAGCTCC   1281

BSNT_04263___   1282 ACAGATGAGATGCTTGAGGATGCTGTCCAAAAATC-ATTGA-ACAGCGGA   1329
                     ||.||.||.||||||||..|.||.||.|||||||| .|.|| |||  ||.
BL00402___pyk   1282 ACTGACGAAATGCTTGAAAAAGCGGTGCAAAAATCTCTCGATACA--GGC   1329

BSNT_04263___   1330 ATTGTAAAACACGGCGATCTT-ATCGTTATTACAGCAGGCACTGTCGGTG   1378
                     ||.|||...|||||||| ||| ||||||||.||.||.||..|||||||||
BL00402___pyk   1330 ATCGTACGCCACGGCGA-CTTGATCGTTATCACGGCCGGAGCTGTCGGTG   1378

BSNT_04263___   1379 AGTCCGGCACTACGAACTTAATGAAGGTTCATACTGTCGGCGATATCGTC   1428
                     |..||||.||.||.|||||.|||||.||..||..||||||.||..|.|||
BL00402___pyk   1379 AAGCCGGTACAACAAACTTGATGAAAGTGTATGTTGTCGGAGACGTGGTC   1428

BSNT_04263___   1429 GCTAAAGGCCAAGGCATTGGACGCAAATCAGCTTACGGTCCGGTTGTCGT   1478
                     ||.||||||||.|||||.|||||||||||.||.|..|||...||.|||.|
BL00402___pyk   1429 GCAAAAGGCCAGGGCATCGGACGCAAATCCGCATTTGGTGAAGTGGTCAT   1478

BSNT_04263___   1479 TGCACAAAATGCAAAAGAAGCTGAGCAAAAAATGACTGACGGTGCGGTAC   1528
                     .||.|||||.|||.|||||||.|...|||||||||..||.||.||.||..
BL00402___pyk   1479 CGCTCAAAACGCACAAGAAGCGGCCAAAAAAATGAAAGATGGCGCCGTTT   1528

BSNT_04263___   1529 TTGTTACCAAAAGCACTGACCGTGATATGATTGCATCCCTTGAAAAAGCG   1578
                     |.|||||.||||||||.||.|||||.|||||.||||||||||||||||||
BL00402___pyk   1529 TAGTTACAAAAAGCACGGATCGTGACATGATGGCATCCCTTGAAAAAGCG   1578

BSNT_04263___   1579 TCTGCTCTTATTACAGAAGAAGGCGGTTTGACTAGCCATGCGGCGGTAGT   1628
                     .||||.||.|||||.|||||||||||.||.||.|||||.|||||.||.||
BL00402___pyk   1579 GCTGCGCTGATTACGGAAGAAGGCGGCTTAACAAGCCACGCGGCAGTCGT   1628

BSNT_04263___   1629 CGGATTAAGCCTTGGCATCCCGGTTATCGTGGGTCTGGAAAATGCGACAT   1678
                     .||.||||||||.||||||||.||.|||||.||..|||||||||||||.|
BL00402___pyk   1629 AGGCTTAAGCCTCGGCATCCCTGTCATCGTCGGAATGGAAAATGCGACTT   1678

BSNT_04263___   1679 CTATTTTGACAGATGGCCAGGATATTACAGTTGACGCTTCCAGAGGCGCA   1728
                     |.|||.|||.|||.||..|.||.||.||.||.|||.|..||.|.||.||.
BL00402___pyk   1679 CCATTCTGAAAGAGGGAGAAGACATCACGGTCGACTCCGCCCGCGGAGCT   1728

BSNT_04263___   1729 GTCTATCAAGGCCGTGCGAGCGTTCTTTAA   1758
                     ||.||..||||.|||||.|||||.||||||
BL00402___pyk   1729 GTATACAAAGGACGTGCAAGCGTGCTTTAA   1758


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