Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01389 and BL00412
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:54
# Commandline: needle
# -asequence dna-align/BSNT_01389___padR.1.5803.seq
# -bsequence dna-align/BL00412___padR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01389___padR-BL00412___padR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01389___padR-BL00412___padR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01389___padR
# 2: BL00412___padR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 607
# Identity: 394/607 (64.9%)
# Similarity: 394/607 (64.9%)
# Gaps: 107/607 (17.6%)
# Score: 1217.0
#
#
#=======================================
BSNT_01389___ 1 ATGAGAGTATTAAAATACGCCATATTAGGGCT--TTTGCGAAAAGGCGA- 47
|||||.|||||.||||||||.||.||.||||| || ||..|.|.||
BL00412___pad 1 ATGAGGGTATTGAAATACGCGATTTTGGGGCTCCTT---GATCATGGGAG 47
BSNT_01389___ 48 ATTGAGCGGATACGATATTACGAGTTATTTTAAAGAGGAGCTCGGCCAAT 97
.||||||||.||||||||.||.||....|||||||..||..|.|||||||
BL00412___pad 48 TTTGAGCGGCTACGATATGACAAGCCGGTTTAAAGCCGAATTGGGCCAAT 97
BSNT_01389___ 98 TTTGGAGCGCCAAACACAGCCAGATTTATCCCGAGCTCAAAAAGCTGACG 147
|||||||||||||.|||||||||||||||||||||||.||||||||||||
BL00412___pad 98 TTTGGAGCGCCAAGCACAGCCAGATTTATCCCGAGCTGAAAAAGCTGACG 147
BSNT_01389___ 148 GATGAAGGGTTTATTACG---TTCCGGACAAC---GATTCAAGGCACGAA 191
||||||||.||||| || || || ||| |||.||||||.|.||
BL00412___pad 148 GATGAAGGATTTAT--CGAATTT---GA-AACGGTGATCCAAGGCTCAAA 191
BSNT_01389___ 192 GCTGGAGAAAAAGATGTACACCCTGACAGACAACGGAAAACAGGAGCTTC 241
..|.||.||.||.|||||..||.|.|||||...||||||.|..||.||||
BL00412___pad 192 ATTAGAAAAGAAAATGTATTCCATCACAGAAGCCGGAAAGCGTGAACTTC 241
BSNT_01389___ 242 ATGCCTGGCTGATCCGCCA--CCAGCCGATACCCGAGACGGTGAAGGATG 289
|.|..||||| |.||..| ..|||||.|.||.||.|||||.||.||||
BL00412___pad 242 ACGGGTGGCT--TACGGAATTTAAGCCGGTTCCAGATACGGTAAAAGATG 289
BSNT_01389___ 290 AATTTATGCTGAAGGCTTATTTTATTTCTTCTCT--------AT--CGCG 329
|||||||||||||.|||||||||||.|||||..| || .|||
BL00412___pad 290 AATTTATGCTGAAAGCTTATTTTATCTCTTCGATGGAACCTGATGAAGCG 339
BSNT_01389___ 330 GCAGGAGGCTTCTGATTTATTTACAGACCAGCTTCAAAA-----ACGCAA 374
|..|||||| ||||..||.||||||||||| |.|.||
BL00412___pad 340 --AAAAGGCTT--------TTTAACGATCAGCTTCAAAAGAGACAGGAAA 379
BSNT_01389___ 375 GGCTAAGCTGTCCGATCTGCAGGA--AAGCT--ATGAA---AAGCTTATG 417
|||||| |..|.|..|..| ||||| ||||| ||||
BL00412___pad 380 ----AAGCTG--CTTTTTTAAACACCAAGCTCGATGAATTGAAGC----- 418
BSNT_01389___ 418 GCTTCAGCAAAGC--------CGATGTCGTTTTCTTCACCGGACTTCGGC 459
||.|||| |.||..||||....||.||..|.||||||
BL00412___pad 419 ------GCGAAGCGGGTGATTCAATAACGTTCCGCTCGCCTCATTTCGGC 462
BSNT_01389___ 460 CACTATCTTGTGCTGACGAAAGCGCTGGAGCGGGAGAAAA----ATTACG 505
||.||.|||||..||||....|||||.|||||||| |||| |||.|
BL00412___pad 463 CATTACCTTGTATTGACCCGGGCGCTTGAGCGGGA-AAAAGGCTATTGC- 510
BSNT_01389___ 506 TTTCTTGGCTGGAATCAATTTTAGC-------------TATGATAGATAA 542
||.|||||.||| || ||| .|.||| |||||
BL00412___pad 511 --TCATGGCTTGAA--AA----AGCGCTTCTCCTGATGGAGGAT-GATAA 551
BSNT_01389___ 543 GGATTAA 549
||.|||.
BL00412___pad 552 GGCTTAG 558
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