Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04294 and BL00420

See Amino acid alignment / Visit BSNT_04294 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_04294___ytxK.1.5803.seq
#    -bsequence dna-align/BL00420___ytxK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04294___ytxK-BL00420___ytxK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04294___ytxK-BL00420___ytxK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04294___ytxK
# 2: BL00420___ytxK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1052
# Identity:     697/1052 (66.3%)
# Similarity:   697/1052 (66.3%)
# Gaps:         127/1052 (12.1%)
# Score: 2207.5
# 
#
#=======================================

BSNT_04294___      1 ATGCAAAAAGA-CCATGTAGGTGCGGTGTATGA---GCTGTTAAACGAAG     46
                     ||||||||..| ||| ||.|...||.|.|||||   |||           
BL00420___ytx      1 ATGCAAAACTATCCA-GTCGAAACGATTTATGAATGGCT-----------     38

BSNT_04294___     47 CCGCGATTATGATAAAGAA--TGAATT---------------GCAGATTT     79
                              |||.||||.|  .|||.|               ||||||..
BL00420___ytx     39 ---------TGACAAAGGAGCGGAAGTCATCGCACGCGATCGGCAGATCC     79

BSNT_04294___     80 CATATATAGAGGCGCTGGCCGAAGCAGGAGAAATGTATTTTCTTGAAAAA    129
                     |.||.|||||.|...||||.|||||.||||  |.|.|  |||||.|.|  
BL00420___ytx     80 CTTACATAGAAGGATTGGCGGAAGCCGGAG--AGGCA--TTCTTTACA--    123

BSNT_04294___    130 ACGGATCAGCTGAAACTGCCTGCTGATCAGA--AAACCAAACAACTTCAG    177
                       ||.||.||.|  ||.||..||| .||.||  ||.||.|||||   .||
BL00420___ytx    124 --GGTTCTGCGG--ACCGCGGGCT-TTCCGAAGAAGCCGAACAA---AAG    165

BSNT_04294___    178 GCTCTGCTTGAAAAAGCGGAATTCGGCACGT-----------ATGAG---    213
                     |       ||||..|.|.||  ||||| |||           | |||   
BL00420___ytx    166 G-------TGAAGGATCTGA--TCGGC-CGTGCGCGCTTTTCA-GAGTGC    204

BSNT_04294___    214 ---CATGAGTGGGTACGCAAGGCTTTTCAGCTTGCCGTCCTTAAAGGAAT    260
                        |||||||.|.||||.||.||.||.|||||||||.|.||.|||||...
BL00420___ytx    205 AGTCATGAGTCGATACGGAAAGCCTTCCAGCTTGCCATACTGAAAGGCCA    254

BSNT_04294___    261 GAAAGATATCTCTCATCCAAACAGACAAATGACGCCGGATACGATCGGGC    310
                     |||||||||..|||||||.|||||.||.||||||||.|||||||||||..
BL00420___ytx    255 GAAAGATATTCCTCATCCGAACAGGCAGATGACGCCCGATACGATCGGAT    304

BSNT_04294___    311 TTTTCATCAGCTATTTGGTGAATAAGTTTATG--GCGGACAAAAAGGAAC    358
                     |.||.|||.|.|||.|.|||||.||.||||||  ||||| ||||||| |.
BL00420___ytx    305 TATTTATCGGATATCTTGTGAACAAATTTATGGAGCGGA-AAAAAGG-AT    352

BSNT_04294___    359 TGACCATTCTTGATCCAGCCTTGGGAACTGGGAACCTTCTGTTTACCGTG    408
                     ||||..|..|||||||.||..|.||.|||||.|||||.|||.||.||||.
BL00420___ytx    353 TGACGCTGTTTGATCCGGCGGTCGGCACTGGAAACCTGCTGCTTGCCGTT    402

BSNT_04294___    409 CTGAACCAGCTGTCTGAAAAAACGGCAAACAGC-TTTGGCATTGAAATTG    457
                     .|||||||||||.||||..||.|||.||| ||| ||.|||...||.||||
BL00420___ytx    403 TTGAACCAGCTGGCTGAGGAAGCGGGAAA-AGCGTTCGGCTCAGAGATTG    451

BSNT_04294___    458 ATGATGTGCTCTTGAAAATCGCCTATGCCCAAGCGAACCTTCTGAAAAAA    507
                     ||||.||.||..|.||..|.|||||||.|||.||.|||||.|.|.||||.
BL00420___ytx    452 ATGACGTCCTGATCAAGCTGGCCTATGTCCAGGCAAACCTGCAGGAAAAG    501

BSNT_04294___    508 GAGCTTGAGCTTTTCCACCAGGACAGCCTTGAGCCGTTGTTTATTGATCC    557
                     ||..|.||||||||..|||||||||||||..|||||.|.|||||.||.|.
BL00420___ytx    502 GAAATCGAGCTTTTTAACCAGGACAGCCTGCAGCCGATTTTTATGGAACA    551

BSNT_04294___    558 AGTTGACACGGTCATTTGTGATCTGCCAGTCGGCTATTATCCGAATGACG    607
                     .|..||..|||||||.||.|||||.||.|||||.||||||||..||||||
BL00420___ytx    552 TGCCGATGCGGTCATCTGCGATCTTCCTGTCGGATATTATCCTGATGACG    601

BSNT_04294___    608 AAGGAGCAGAAGCG----TTTGAGCTCAAAGCTGACGAAGGCCATTCCTT    653
                     ||.|.||    |||    ||.||..|.||.||.||.||||||||.||.||
BL00420___ytx    602 AAAGTGC----GCGCGCTTTCGAATTAAAGGCAGATGAAGGCCACTCTTT    647

BSNT_04294___    654 CGCTCATCATCTGTTTATTGAACAGAGCGTCAAGCATACCAAACCGGGCG    703
                     ..|.||.|||.|||||||||||||.|||.|.|...||||.||||||||||
BL00420___ytx    648 TTCACACCATTTGTTTATTGAACAAAGCTTGACCTATACGAAACCGGGCG    697

BSNT_04294___    704 GCTACTTATTTTTTATGATTCCGAATCATTTGTTTGAGAGCTCCCAAAGC    753
                     ||||.||||||||||||||||||||.|||||||||||.|||...||||||
BL00420___ytx    698 GCTATTTATTTTTTATGATTCCGAACCATTTGTTTGAAAGCGGTCAAAGC    747

BSNT_04294___    754 GGCAAGCTGAAACAGT---TTTTCAAAG-ATAAGGTTCATATCAACGCAC    799
                     |..||||||    .||   ||||.|||| |.||.|..|||||.||.|||.
BL00420___ytx    748 GAAAAGCTG----CGTACCTTTTTAAAGAACAATGCGCATATTAATGCAG    793

BSNT_04294___    800 TGTTGCAGCTGCCAAAATCTATTTTTAAAGACGAAGCTCATGCCAAAAGC    849
                     ||.|.|||||.||....||.|||||.|||||.|||||.||.||.||.|||
BL00420___ytx    794 TGCTTCAGCTTCCGCTGTCCATTTTCAAAGATGAAGCACACGCGAAGAGC    843

BSNT_04294___    850 ATCCTTGTGCTTCAGAAACAAGGAGAGTATACGAAAGCGCCGGGGCAAA-    898
                     ||..|.||..|.||.||.||.||.||..|..||||||||||    .||| 
BL00420___ytx    844 ATTTTGGTTTTACAAAAGCATGGGGAACAGGCGAAAGCGCC----TAAAC    889

BSNT_04294___    899 ---TTCTGCTTGCGAATCTTCCGTCTTTCTCCAATCAAAAGGCGATGCTT    945
                        |||||||.|||.|..|.|||||.|||.|||||||..|.||||||||.
BL00420___ytx    890 AGGTTCTGCTCGCGCAAGTCCCGTCATTCGCCAATCAGGATGCGATGCTG    939

BSNT_04294___    946 GATATGATGGCTCAATTTGATGAATGGT-------TTAAAAAAGAAAAGT    988
                     .|.||||..||..||.|.||....||||       |.||||||||.||  
BL00420___ytx    940 AACATGACAGCCAAACTCGACAGCTGGTTCCAGGCTGAAAAAAGATAA--    987

BSNT_04294___    989 AA    990
                       
BL00420___ytx    987 --    987


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