Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04306 and BL00430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04306___sspA.1.5803.seq
# -bsequence dna-align/BL00430___sspB.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04306___sspA-BL00430___sspB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04306___sspA-BL00430___sspB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04306___sspA
# 2: BL00430___sspB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 216
# Identity: 169/216 (78.2%)
# Similarity: 169/216 (78.2%)
# Gaps: 9/216 ( 4.2%)
# Score: 660.0
#
#
#=======================================
BSNT_04306___ 1 ATGGCTAACAATAACTCAGGTAACAGC------AACAACCTTTTAGTACC 44
||||||.|.||.|| |||..|| ||| |||.|.||.||.||.||
BL00430___ssp 1 ATGGCTCAAAACAA--CAGACAA-AGCAGTTCTAACCAACTATTGGTTCC 47
BSNT_04306___ 45 AGGAGCTGCTCAAGCGATCGACCAAATGAAATTAGAAATCGCTTCTGAAT 94
.||.|||||||||||.|||||||||||||||||.||||||||||||||||
BL00430___ssp 48 TGGTGCTGCTCAAGCTATCGACCAAATGAAATTCGAAATCGCTTCTGAAT 97
BSNT_04306___ 95 TCGGTGTAAACCTTGGAGCAGACACAACTTCTCGCGCTAACGGTTCTGTT 144
|.||.||.||||||||||||||.||.||||||||.||.||||||||.|||
BL00430___ssp 98 TTGGCGTTAACCTTGGAGCAGAAACTACTTCTCGTGCAAACGGTTCAGTT 147
BSNT_04306___ 145 GGAGGAGAGATCACAAAACGTCTTGTATCTTTTGCTCAACAAAACATGGG 194
||||||||.|||||.||.|||.|.||.|||||.||||||||..|.|||||
BL00430___ssp 148 GGAGGAGAAATCACTAAGCGTTTAGTTTCTTTCGCTCAACAGCAAATGGG 197
BSNT_04306___ 195 CGGAGGACAATTCTAA 210
.|||..||||...|||
BL00430___ssp 198 TGGAACACAACAATAA 213
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