Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04323 and BL00440

See Amino acid alignment / Visit BSNT_04323 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04323___acsA.1.5803.seq
#    -bsequence dna-align/BL00440___acsA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04323___acsA-BL00440___acsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04323___acsA-BL00440___acsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04323___acsA
# 2: BL00440___acsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1759
# Identity:    1311/1759 (74.5%)
# Similarity:  1311/1759 (74.5%)
# Gaps:          80/1759 ( 4.5%)
# Score: 4796.0
# 
#
#=======================================

BSNT_04323___      1 ATGAATTTGAAAGCGTTACCAGCAATAGAGGGGGATCATAACTTAAAAAA     50
                     |||||.|||||||||.|.||||||..|.||||..||.|.|||||.|||.|
BL00440___acs      1 ATGAAATTGAAAGCGCTGCCAGCAGAAAAGGGAAATTACAACTTGAAAGA     50

BSNT_04323___     51 CTATGAAGAAACGTACCGG-CATTTTGATTGGGCCGAGGCAGAGAAACAT     99
                     ||||||.|||||.|||||| || |||||.|||...||.||.||.||.|||
BL00440___acs     51 CTATGATGAAACATACCGGACA-TTTGACTGGAAGGATGCCGAAAAGCAT     99

BSNT_04323___    100 TTCTCTTGGCATGAGACAGGGAAACTGAATGCGGCGTATGAAGCGATTGA    149
                     ||.||.|||||..|.||.||.|||.|.|||||.||.||||||||.||.||
BL00440___acs    100 TTTTCATGGCACAAAACGGGAAAAATCAATGCAGCTTATGAAGCTATCGA    149

BSNT_04323___    150 CCGCCATGCCGAATC--GTTTCGAAAAAACAAAGTAGCGCTTTATTATAA    197
                     ||||||.||.||.||  .|||  .|||||||||||.||..||||.||.||
BL00440___acs    150 CCGCCACGCTGAGTCAAATTT--GAAAAACAAAGTGGCATTTTACTACAA    197

BSNT_04323___    198 AGA-------CGCAAAAAGGGATGAAAAATACACATTTAAAGAAATGAAG    240
                     |||       |||       ||.|||||.|||||.||.|.|||.|||||.
BL00440___acs    198 AGATCCGGTCCGC-------GAAGAAAAGTACACTTTCAGAGAGATGAAA    240

BSNT_04323___    241 GAAGAATCAAACAGAGCCGGGAATGTGCTGAGA-CGGTATGGAAATGTGG    289
                     .|.|||.|.||||.|||||||||||| ||.|.| |.|.|||...||||||
BL00440___acs    241 AATGAAACCAACAAAGCCGGGAATGT-CTTAAAGCAGCATGCCGATGTGG    289

BSNT_04323___    290 AAAAAGGGGACCGCGTTTTTATTTTTATGCCGAGATCACCCGAGCTTTAT    339
                     .|||.||.|||||.||.|||.||||||||||||||||.||||||||||||
BL00440___acs    290 GAAAGGGAGACCGTGTGTTTGTTTTTATGCCGAGATCGCCCGAGCTTTAT    339

BSNT_04323___    340 TTTATTATGCTTGGCGCAATCAAAATTGGCGCCATCGCCGGGCCGCTGTT    389
                     ||||||.|.||.|||||.||||||.|.||.||.||||.|||||||.|.||
BL00440___acs    340 TTTATTCTTCTCGGCGCCATCAAATTGGGAGCGATCGTCGGGCCGTTATT    389

BSNT_04323___    390 CGAAGCATTTATGGAGGGAGCGGTGAAAGATCGGCTTGAAAACAGTGAGG    439
                     .|||||.||||||||.||.||.||.|||||..||||||.||||||.|..|
BL00440___acs    390 TGAAGCGTTTATGGAAGGTGCCGTCAAAGACAGGCTTGCAAACAGCGGAG    439

BSNT_04323___    440 CAAAGGTTGTTGTCACAACACCTGAGCTGCTGGAGAGAATACCGGTAGAC    489
                     |.|||||..|.||.||.||.||.||..||||.||..|..|.||||..||.
BL00440___acs    440 CGAAGGTCATCGTGACGACGCCGGAATTGCTTGAACGGGTGCCGGCCGAT    489

BSNT_04323___    490 AAACTGCCTCA-CTTGCAGCATGTCTTCGTAGTCGGGGGAGAGGCTGAGA    538
                     .||||.||..| ||||.|.||    .||.|.||||..|||||.|      
BL00440___acs    490 GAACTTCCGGATCTTGAATCA----ATCATTGTCGTTGGAGAAG------    529

BSNT_04323___    539 GCG----GCACGAA-----TATCATCAATTATGATG---AAGCAGC-GAA    575
                     |||    |.|.|||     |.||||..|||||.|.|   ||||.|| |||
BL00440___acs    530 GCGTAAAGGAAGAAGGACCTGTCATTGATTATTACGCGAAAGCGGCGGAA    579

BSNT_04323___    576 ACAGGAAAGCACAAGA-CTGGATATCGAATGGATGGATAAAAAAGACGGC    624
                     .|||    |||| .|| ||.||.||.||||||.|||||.|..|||||||.
BL00440___acs    580 GCAG----GCAC-TGATCTTGAGATTGAATGGGTGGATCAGGAAGACGGG    624

BSNT_04323___    625 TTTCTGCTTCACTATACATCAGGTTCCACTGGTACGCCAAAGGGCGTGCT    674
                     .|.||||||||||||||.||.|||||.||.||..|||||||.||.||.||
BL00440___acs    625 ATGCTGCTTCACTATACGTCGGGTTCGACCGGCGCGCCAAAAGGGGTTCT    674

BSNT_04323___    675 GCATGTCCATGAAGCGATGATTCAGCAATATCAAACAGGAAAGTGGGTCC    724
                     .||.||||||.||||.|||||.|||||.||||||||||..||.|||||.|
BL00440___acs    675 CCACGTCCATAAAGCAATGATCCAGCATTATCAAACAGCCAAATGGGTTC    724

BSNT_04323___    725 TTGATTTAAAGGAAGAAGACATTTATTGGTGCACGGCTGATCCAGGCTGG    774
                     |||||.|..|.||.||.|||||.|||||||||||.||||||||.||||||
BL00440___acs    725 TTGATCTGCATGACGATGACATCTATTGGTGCACCGCTGATCCCGGCTGG    774

BSNT_04323___    775 GTGACAGGTACGGTATACGGCATTTTTGCACCGTGGCTGAACGGAGCGAC    824
                     ||.||.||.|||||.|||||.|||||.|..|||||||||||.|||||.||
BL00440___acs    775 GTCACCGGAACGGTTTACGGGATTTTCGGTCCGTGGCTGAATGGAGCTAC    824

BSNT_04323___    825 AAATGTCATCGTCGGCGGACGTTTCAGCCCGGAAAGCTGGTATGGT----    870
                     .|||||..||||.|||||..|.|||||.||.||     ||.|||||    
BL00440___acs    825 GAATGTTGTCGTAGGCGGCAGATTCAGTCCTGA-----GGCATGGTACGA    869

BSNT_04323___    871 -ACGATTGAACAGCTTGGCGTCAATGTCTGGTACAGCGCGCCGACCGCTT    919
                      |||||||||.|..|.|..||.|..||.||||||||||||||.||.||||
BL00440___acs    870 AACGATTGAAAAAATGGAAGTGACGGTATGGTACAGCGCGCCAACGGCTT    919

BSNT_04323___    920 TTCGGATGCTGATGGGAGCGGGAGATGA-------AATGGCTGCGAAATA    962
                     |.||||||||||||||.||.||.||.||       |||       |||||
BL00440___acs    920 TCCGGATGCTGATGGGTGCAGGCGACGATCTTGTGAAT-------AAATA    962

BSNT_04323___    963 TGATCTAACTTCACTCCGGCATGTGCTCAGTGTCGGTGAGCCGCTAAATC   1012
                     |.||||||..||..|.||||||.|..|.||.||.||.||||||.||||||
BL00440___acs    963 TAATCTAAGCTCCTTGCGGCATATTTTAAGCGTAGGGGAGCCGTTAAATC   1012

BSNT_04323___   1013 CGGAAGTCATCAGATGGGGACATAAAGTTTTTAACAAACGAATTCATGAT   1062
                     |.|||||||||||.|||||.||||||||.||...|||.||.|||||||||
BL00440___acs   1013 CCGAAGTCATCAGGTGGGGGCATAAAGTCTTCGGCAACCGGATTCATGAT   1062

BSNT_04323___   1063 ACATGGTGGATGACAGAAACGGGCAGTCAGCTTATCTGCAACTATCCTTG   1112
                     ||.|||||||||||.|||||.||....|||||.||||||||.||.||.||
BL00440___acs   1063 ACTTGGTGGATGACTGAAACAGGATCGCAGCTCATCTGCAATTACCCGTG   1112

BSNT_04323___   1113 CATGGATATTAAACCGGGTTCAATGGGTAAGCCGATTCCAGGAGTGGAGG   1162
                     ||||||.|||||||||||.||||||||.|||||||||||.||.||.||||
BL00440___acs   1113 CATGGAAATTAAACCGGGATCAATGGGCAAGCCGATTCCCGGTGTAGAGG   1162

BSNT_04323___   1163 CAGCGATCGTTGACAATCAAGGCAACGAGCTTCCGCCGTACCGAATGGGC   1212
                     |.||.|||||.|||||.||.||.||.||.||.||.||.|||.|||||||.
BL00440___acs   1163 CTGCAATCGTCGACAACCAGGGAAATGAACTGCCTCCTTACAGAATGGGA   1212

BSNT_04323___   1213 AATCTCGCCATCAAAAAGGGCTGGCCTTCCATGATGCATACCATTTGGAA   1262
                     |||||||||||.|||||.||||||||.||.|||||||||.|.||.|||||
BL00440___acs   1213 AATCTCGCCATTAAAAAAGGCTGGCCGTCGATGATGCATTCGATCTGGAA   1262

BSNT_04323___   1263 TAACCCTGAAAAGTATGAATCGTATTTCATGCCGGGCGGCTGGTATGTGT   1312
                     .||.||||||||.|||...||.|||||.||||||||||..||||||||||
BL00440___acs   1263 CAATCCTGAAAAATATAGCTCCTATTTTATGCCGGGCGATTGGTATGTGT   1312

BSNT_04323___   1313 CTGGGGATTCTGCTTACATGGATGAAGAGGGATACTTTTGGTTCCAAGG-   1361
                     |.||.|||||.||.||||||||||||||.||.|||||.||||||||.|| 
BL00440___acs   1313 CAGGAGATTCCGCCTACATGGATGAAGACGGGTACTTCTGGTTCCAGGGA   1362

BSNT_04323___   1362 CAGAGTTGATGACGTCATCATGACCTCCGGTGAGCGCGTCGGCCCATTTG   1411
                     |.|| |.||.||.|||||||||||.||.||.||.|||||||||||.||||
BL00440___acs   1363 CGGA-TCGACGATGTCATCATGACATCGGGCGAACGCGTCGGCCCGTTTG   1411

BSNT_04323___   1412 AAGTGGAAAGCAAGCTGGTCGAACATCCGGCTATTGCAGAAGCAGGCGTA   1461
                     ||||.||.||||||||.||.||.||||.|||..|.||.|||||||||||.
BL00440___acs   1412 AAGTCGAGAGCAAGCTTGTTGAGCATCAGGCCGTCGCTGAAGCAGGCGTC   1461

BSNT_04323___   1462 ATCGGAAAACCTGACCCGGTGCGTGGAGAAATCATTAAAGCCTTTATTGC   1511
                     |||||.|||||.||.||.||.||.||.|||||.||||||||.||.||.||
BL00440___acs   1462 ATCGGCAAACCGGATCCCGTCCGGGGTGAAATTATTAAAGCGTTCATCGC   1511

BSNT_04323___   1512 ACTCAGGGAAGGATTTGAGCCTTCTGATAAACTGAAAGAAGAGATCCGCC   1561
                     ..|.|||||.||.|.|||.||.||.|||....|.||||||||.|||.|.|
BL00440___acs   1512 CTTGAGGGACGGTTATGAACCGTCAGATGCGTTAAAAGAAGAAATCAGGC   1561

BSNT_04323___   1562 TATTCGTAAAGCAGGGTCTT-GCAGCCCATGCGGCTCCGCGTGAGATCGA   1610
                     ..|||||.||.||.|| ||| ||.||.|||||.||.||..|.||.|||||
BL00440___acs   1562 AGTTCGTGAAACAAGG-CTTGGCCGCACATGCCGCGCCAAGGGAAATCGA   1610

BSNT_04323___   1611 ATTTAAAGATAAGCTTCCGAAAACCCGAAGCGGAAAGATCATGAGGCGCG   1660
                     ||||||||||||.||.|||||.||..|||||||||||||||||||.||||
BL00440___acs   1611 ATTTAAAGATAAACTGCCGAAGACAAGAAGCGGAAAGATCATGAGACGCG   1660

BSNT_04323___   1661 TGCTGAAGGCATGGGAGCTTAATCTTCCTGCTGGAGATCTGTCAACAATG   1710
                     |.|||||.|||||||||||.||.|||||.||.||.|||||.|||.|.|||
BL00440___acs   1661 TCCTGAAAGCATGGGAGCTGAACCTTCCGGCAGGCGATCTCTCATCGATG   1710

BSNT_04323___   1711 GAGGATTAA   1719
                     ||.||.|.|
BL00440___acs   1711 GAAGACTGA   1719


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