Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04330 and BL00442

See Amino acid alignment / Visit BSNT_04330 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04330___motP.1.5803.seq
#    -bsequence dna-align/BL00442___ytxD.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04330___motP-BL00442___ytxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04330___motP-BL00442___ytxD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04330___motP
# 2: BL00442___ytxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     599/883 (67.8%)
# Similarity:   599/883 (67.8%)
# Gaps:         104/883 (11.8%)
# Score: 2054.5
# 
#
#=======================================

BSNT_04330___      1 TTGCTTTTTTCATGGGGAGAAATGATGAAACGTTTTGATTATCTTACACC     50
                                             ||||||||.|||||||||||.|||||
BL00442___ytx      1 ------------------------ATGAAACGATTTGATTATCTGACACC     26

BSNT_04330___     51 TGTTGGATTTGTGTTAGGAACGATTATTATTGTTA----TCGGGATTATT     96
                     .||.||.|||.|..|.||   .|||.|.||| |||    ||||..||.|.
BL00442___ytx     27 GGTCGGTTTTATTCTGGG---TATTTTCATT-TTAGTGCTCGGCGTTGTC     72

BSNT_04330___     97 TCAGGATCGGGAGTAAGCGGTTTCCGCTCTTTTCTT--------GATCTG    138
                     ||.|||.||||       |.||||||.| ||||.||        |||.||
BL00442___ytx     73 TCTGGAGCGGG-------GCTTTCCGGT-TTTTATTCGTTTATCGATTTG    114

BSNT_04330___    139 ACCTCTTTCTTCATCGTAACAGGGGGACTTTGCGCCGCTGTTTTTATCAG    188
                     ||.|||||.||.||.||.||.||.|||.|.||.||.|||||.||.|||||
BL00442___ytx    115 ACGTCTTTTTTTATTGTGACGGGTGGATTGTGTGCAGCTGTATTCATCAG    164

BSNT_04330___    189 -TTTTCCGCCAAGTGAGCTGAAAAAAGCGCCCTCTGTGTTAAAGCAGGCA    237
                      |||||| ||.|..||..|.||||.||||||..|||||.|.|||||||..
BL00442___ytx    165 CTTTTCC-CCGAAAGATTTAAAAAGAGCGCCGGCTGTGCTGAAGCAGGTC    213

BSNT_04330___    238 TTCA--TCCGCCAGGAAGACAATGTGAAAGATCTTGTGAAAACCTTTGTT    285
                     ||.|  ||.|  |||||||..|||||...||..|.||.|||||||||||.
BL00442___ytx    214 TTTATTTCGG--AGGAAGATGATGTGCGCGAATTGGTCAAAACCTTTGTC    261

BSNT_04330___    286 TCCCTTTCCGATCACGCGCGAAAACACGGGCTTTTATCATTGGATG----    331
                     ..|||.||.||.||.|||||.|||||.||..|||||||||||||.|    
BL00442___ytx    262 AGCCTGTCTGAACAGGCGCGCAAACAAGGAATTTTATCATTGGACGCCAA    311

BSNT_04330___    332 -----ATCAGGCTCGGGAAATCAAAGATCCATTCTTGAAAAAAGGGCTGC    376
                          ||         |||||.|||||.||.||.|||||||||||.||||
BL00442___ytx    312 TGTCAAT---------GAAATGAAAGACCCGTTTTTGAAAAAAGGCCTGC    352

BSNT_04330___    377 TTTTAGCGATTGACGGCTGGGATGAAGAAACGATTCGGCTCGTCATGGAT    426
                     |..|.||.||.|||||.||||||||.||.|||||.||....||.|||.|.
BL00442___ytx    353 TCCTTGCCATCGACGGATGGGATGAGGAGACGATCCGCAATGTGATGAAC    402

BSNT_04330___    427 TCAGAAATCGCAGCAATGGAGGAACGGCACCGAAAAGGGCGGCGAGTTTT    476
                     ||.|||||.||.||.|||||.|||||.|||.||||.|||.|..|..|.||
BL00442___ytx    403 TCGGAAATTGCCGCGATGGAAGAACGACACAGAAAGGGGAGAAGGATCTT    452

BSNT_04330___    477 TGAAAAAGCGGGAGAATTCGCTCCGGCATGGGGAATGATCGGAACACTCG    526
                     |||||||||.||||||||.||.||.||||||||||||||||||||.||.|
BL00442___ytx    453 TGAAAAAGCAGGAGAATTTGCGCCTGCATGGGGAATGATCGGAACGCTTG    502

BSNT_04330___    527 TCGGGCTTGTGCTGATGCTCAAAAACTTAAACGACCCGCATATGCTCGGA    576
                     ||||.||.||..||||||||||||||.|.|||.|.|||.|.|.||||||.
BL00442___ytx    503 TCGGTCTCGTCATGATGCTCAAAAACCTGAACAAGCCGGAAACGCTCGGT    552

BSNT_04330___    577 CCAAACATGGCCATTGCGCTTCTGACGACTTTATATGGTTCATTACTGGC    626
                     ||.||.|||||.||.||.|||.|||||||..|.||.||.|||.|..|.||
BL00442___ytx    553 CCGAATATGGCAATCGCCCTTTTGACGACGCTTTACGGATCACTTTTAGC    602

BSNT_04330___    627 AAATATGGTCTTCAACCCGATCGCGGCTAAGCTTGAAGAGAAAACAGAAA    676
                     .||.|||.|.||.|..||||||||.||.|||||||||||.||.||.||.|
BL00442___ytx    603 CAACATGCTGTTTATACCGATCGCCGCGAAGCTTGAAGAAAAGACGGAGA    652

BSNT_04330___    677 GTGAAATTTTCATCAAGCAGGTAATGGTGGAAGGGATTATCGGTGTTCAA    726
                     .||||||.||.|..|||||.||.|||.|.|||||.||.|||||..|.|||
BL00442___ytx    653 ATGAAATCTTTAAGAAGCAAGTCATGATCGAAGGCATCATCGGCATCCAA    702

BSNT_04330___    727 TCCGGAAAAAACCCGCGCAACCTTGAAAGCCAGCTGGTCGTTTTCAGCTC    776
                     ||.||||.|||.|||||.||.||||||||.|||||.|||||||||||.||
BL00442___ytx    703 TCGGGAAGAAATCCGCGAAATCTTGAAAGTCAGCTTGTCGTTTTCAGTTC    752

BSNT_04330___    777 ACGGGAAGAATGGCAGAAGCAGCCAAAA------------CAAGTAAAAA    814
                     |...||||||||| |.||      ||||            ||.|   |||
BL00442___ytx    753 AAAAGAAGAATGG-ACAA------AAAAGCGGGCGGACCGCATG---AAA    792

BSNT_04330___    815 CAAAAAAGGGA----TCTGTACATGAAGCTTAG    843
                     |||||   |||    .||   ||||||||||||
BL00442___ytx    793 CAAAA---GGACAGGCCT---CATGAAGCTTAG    819


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04330 and BL00442

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
