Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02783 and BL00452
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:32
# Commandline: needle
# -asequence dna-align/BSNT_02783___ymaD.1.5803.seq
# -bsequence dna-align/BL00452___ymaD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02783___ymaD-BL00452___ymaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02783___ymaD-BL00452___ymaD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02783___ymaD
# 2: BL00452___ymaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 476
# Identity: 328/476 (68.9%)
# Similarity: 328/476 (68.9%)
# Gaps: 43/476 ( 9.0%)
# Score: 1056.5
#
#
#=======================================
BSNT_02783___ 1 ATGGCAGATCATCATTTTTATTTAAAAGCGAATTGGCCGGGTAACCGCAA 50
|||||..|.|||||||||||..|..|.||..|.|||||.||.||.||.||
BL00452___yma 1 ATGGCTAAACATCATTTTTACCTTCAGGCAGACTGGCCTGGAAAACGAAA 50
BSNT_02783___ 51 TGATGTCGGTACGATTGAAAGCGGAAACCTGATCACATCG--ATTTCCAT 98
.||..||||.|.||||||||||||.||..|.| |.|.|| |||||.||
BL00452___yma 51 CGACATCGGAAGGATTGAAAGCGGGAATTTAA--AAACCGAAATTTCGAT 98
BSNT_02783___ 99 TCCTAAAGAAATGGATGGCCCGGGAGAAGGGACCAACCCAGATGAAATGC 148
.||.||.||||||||.||||||||.|..|||||.|||||.||.|||||||
BL00452___yma 99 ACCAAAGGAAATGGACGGCCCGGGGGCGGGGACAAACCCTGACGAAATGC 148
BSNT_02783___ 149 TTCTCGGGGCGGCAGCGACCTGTTACATTATTACACTTGCAGCGATGATG 198
|.|||||.||.||.|||||.||.||.||.|||||||||||||||||||||
BL00452___yma 149 TGCTCGGTGCCGCTGCGACTTGCTATATCATTACACTTGCAGCGATGATG 198
BSNT_02783___ 199 GAGAGAAGCGGGCTGGAAAAAGA-AGACTTACAGATGGAGTCAGAAGGCA 247
||.||||||||..|||||||||| ||.||.|| ||||||.||.||.|.|.
BL00452___yma 199 GAAAGAAGCGGATTGGAAAAAGAGAGCCTGAC-GATGGAATCCGAGGCCG 247
BSNT_02783___ 248 TTGTCGACGTCACAAAAGGAGTCTTTACATACAAAAAGATCATTCACCGT 297
|||||||.||.|||...||.||.|||||.|||.||||.|||||||||.|
BL00452___yma 248 TTGTCGATGTGACAGGCGGGGTGTTTACGTACGAAAAAATCATTCACAG- 296
BSNT_02783___ 298 CCCTCTG-TCGTGCTT----AAACATGATGCTTCACAAGACGACGTCGCA 342
.|||||| || .||.| ||| ||.||..|.|||.|.||.|.||.|
BL00452___yma 297 ACCTCTGATC-CGCCTCCCGAAA---GAAGCGGCGCAAAAAGAGGCCGAA 342
BSNT_02783___ 343 -TTGGCGCACAAG-CTTTGTAAAAAAGCGGAGTCGTCATGCATGATTTCG 390
|||.|| .||| ||...|||||||||||||.|.|||||||||||.||.
BL00452___yma 343 CTTGCCG--AAAGACTGGCTAAAAAAGCGGAGACATCATGCATGATATCA 390
BSNT_02783___ 391 CGTGCAATTCAAGGAAATGTC------------GTGCTGCAGCTTGAAGC 428
.|.||..||||.||.||.||| |.||.|.||.|||..|.
BL00452___yma 391 AGGGCGGTTCAGGGCAACGTCGCCATTGAATTAGAGCCGAAGATTGTCGT 440
BSNT_02783___ 429 CTCTGTGAAACTGGGTGGAGAATAA- 453
||| .||| |.|.||.|
BL00452___yma 441 CTC---CAAA-------GCGGATTAG 456
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