Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00352 and BL00477

See Amino acid alignment / Visit BSNT_00352 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:00
# Commandline: needle
#    -asequence dna-align/BSNT_00352___adaB.1.5803.seq
#    -bsequence dna-align/BL00477___adaB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00352___adaB-BL00477___adaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00352___adaB-BL00477___adaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00352___adaB
# 2: BL00477___adaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity:     345/608 (56.7%)
# Similarity:   345/608 (56.7%)
# Gaps:         148/608 (24.3%)
# Score: 842.0
# 
#
#=======================================

BSNT_00352___      1 ATGGA--AACAAATAAACCAACCCTTTATTGGTCTTTACTAATGTT--CA     46
                     |||||  |.|||||        |.|.||.|||..|...||.|| ||  |.
BL00477___ada      1 ATGGACGATCAAAT--------CGTATACTGGCGTACGCTTAT-TTGCCG     41

BSNT_00352___     47 AGGATTGGAATTTTTATATTGCTTCAACTTTAAAG-----GGGCT-TGTG     90
                     ||| ||||.|..||.|.||||...|.|||     |     ||||| ||| 
BL00477___ada     42 AGG-TTGGCAGATTCACATTGGGGCGACT-----GCCCGCGGGCTCTGT-     84

BSNT_00352___     91 TTTGTAGGTTCACA----GAACAAACCAA----TCGAGGAATTGTTCGAA    132
                             ||.|||    ||...||.|||    |||||||.|||..||..
BL00477___ada     85 --------TTTACAGGGGGATGGAATCAAGGCTTCGAGGATTTGGCCGCT    126

BSNT_00352___    133 TGGGCTAAGAAACGCTTT--CCAGGAAGTCTTCTTGTTGAAGAT----GA    176
                     ||||||.|.|||.|.|||  .|||..|||.|||         ||    ||
BL00477___ada    127 TGGGCTGAAAAAAGATTTACACAGCCAGTTTTC---------ATTCGGGA    167

BSNT_00352___    177 TGATAA--GCTT----GAACCCTATGCTGTTGAAATCA-CTCAA----TA    215
                     |||.||  |.||    |||   ||.||.|     |.|| ||..|    ||
BL00477___ada    168 TGACAAAGGATTGGCAGAA---TACGCCG-----AGCAGCTGCAGGCGTA    209

BSNT_00352___    216 TCTAGAA-GGAAAGCGGAAAAACT--TTACTG--TTCCAGTTGAGTACGC    260
                     | |.||| ||.|||||    ||||  ||.|.|  ||||.||.||....||
BL00477___ada    210 T-TTGAACGGCAAGCG----AACTCATTTCAGCTTTCCTGTCGACCTTGC    254

BSNT_00352___    261 CGGTACGCAATTTCAGCTAGCCGTCTGGAATGCACTTTGTGAAATTCCTT    310
                     |||.||||..||||||||.||.||.|||||.||.||.|..|||||.||||
BL00477___ada    255 CGGCACGCCTTTTCAGCTGGCAGTGTGGAAGGCGCTCTCCGAAATCCCTT    304

BSNT_00352___    311 ATGGACAG-ACGAAATCCTATTCCGACATTGCAAATGATATAAATAAACC    359
                     |.|| ||| ||....|||||||||||.||.||..|..||||..| |||.|
BL00477___ada    305 ACGG-CAGCACTTGCTCCTATTCCGATATCGCCGAGCATATTGA-AAAGC    352

BSNT_00352___    360 A-GCAGCTGTTCGTGCTGTAGGTGCGGCTATTGGGGCTAATCCGGTATTA    408
                     | ||.|||||.||.||.|||||.|||||.||.||.||.||||||.|.|||
BL00477___ada    353 AGGCCGCTGTGCGGGCAGTAGGCGCGGCGATCGGCGCAAATCCGCTGTTA    402

BSNT_00352___    409 ATTACTGTACCGTGCCATCGTGTAATAGGAAAGAATG----GCTCATTAA    454
                     ||....||.||.||||||||.||.||.||.||.|..|    ||||    |
BL00477___ada    403 ATGGTGGTGCCTTGCCATCGGGTTATCGGTAAAAGCGGGCAGCTC----A    448

BSNT_00352___    455 CTGGCTATCGGGGCGGATTTGAAATGAAGACACTGCTCCTCGATCTGGAA    504
                     |.||.||.|||||||||||.||.|||||                    ||
BL00477___ada    449 CGGGATACCGGGGCGGATTGGATATGAA--------------------AA    478

BSNT_00352___    505 AAGCGAGCTTCATCTGA----AATGGA---------TGT-TCCTC---AT    537
                     |||        |.||||    .|||||         ||| .||.|   ||
BL00477___ada    479 AAG--------AACTGATGATGATGGAGTCCGGCGGTGTAACCGCACAAT    520

BSNT_00352___    538 TGA-----    540
                     |.|     
BL00477___ada    521 TCAATTAA    528


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