Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01079 and BL00480

See Amino acid alignment / Visit BSNT_01079 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:35
# Commandline: needle
#    -asequence dna-align/BSNT_01079.1.5803.seq
#    -bsequence dna-align/BL00480___yeaA.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01079-BL00480___yeaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01079-BL00480___yeaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01079
# 2: BL00480___yeaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity:     527/1134 (46.5%)
# Similarity:   527/1134 (46.5%)
# Gaps:         429/1134 (37.8%)
# Score: 1039.0
# 
#
#=======================================

BSNT_01079         0 --------------------------------------------------      0
                                                                       
BL00480___yea      1 ATGGCATCTGCTAAACTGCAGCAGCGATTGGATCAATATAAAGCAATTTA     50

BSNT_01079         1 -------TT-------GATTT------------------TCAGCG----T     14
                            ||       |||||                  ||||||    |
BL00480___yea     51 CTCTGAGTTAAAAAGCGATTTAAAATGGAAAGTCACAGATCAGCGGACAT    100

BSNT_01079        15 TTATGAT--TTG---------------------AGCAGC-----------     30
                     |.|||||  |||                     |||.||           
BL00480___yea    101 TAATGATGATTGCTTCCATGTATGTCGTCAACAAGCGGCCTTTTGATAAA    150

BSNT_01079        31 ----------TATATCAAA---------TCAAACATCGGCAGC-------     54
                               ||.|||..|         |||||||  |||.||       
BL00480___yea    151 GAACGGTTTTTAAATCTGAGTGAGGCTGTCAAACA--GGCCGCCGGTACA    198

BSNT_01079        55 TTCTCAACACTCAATTCACACCACCGCTTTACTGTTGCATCTATTCTGGA    104
                     ||.||..|..|.|..|||..|||.||||..|||.||||..||||..|.||
BL00480___yea    199 TTTTCGCCGTTGAGGTCAGCCCATCGCTACACTTTTGCCGCTATGTTTGA    248

BSNT_01079       105 CATTCATTTTCAGCAT-GAGGCAAAAC---AAA--CATTTCATA-CTTTT    147
                     |.|.|       ||.| ||   |.|||   |||  |||.|||.| |||||
BL00480___yea    249 CGTAC-------GCTTCGA---AGAACCTGAAACGCATATCAGACCTTTT    288

BSNT_01079       148 ATC------GATGTATACAATGA-----AATGG--TGAAGCTAGGATATA    184
                     .||      .||||| |.|||||     ||.||  |.|       |.|.|
BL00480___yea    289 TTCACTCTTTATGTA-AAAATGACCGGCAACGGATTCA-------AAAAA    330

BSNT_01079       185 AGCGGGATATGTTCACATACCTTTCCGCTCTGA-TCTTGCTCACCGGCAA    233
                     ||     |||.|||||.||..|.||||||||.| |||             
BL00480___yea    331 AG-----TATTTTCACTTATTTGTCCGCTCTTATTCT-------------    362

BSNT_01079       234 ATCTGAAACGACAAACCAAAAAGAACAGATGAACATG-------------    270
                      |.||  ||.|.|.|||...|.||.|  ||||.||||             
BL00480___yea    363 -TTTG--ACAAAATACCGTGATGAGC--ATGATCATGACAGCAAAATCAA    407

BSNT_01079       271 --GGGCTAGCAGTTTATC---------AGCAGATGAAGAAAAATCA---T    306
                       ||||      |||.||         ||.| ||||||.|.||.||   |
BL00480___yea    408 TCGGGC------TTTGTCTATTTACAAAGGA-ATGAAGGACAAGCACGTT    450

BSNT_01079       307 TATTT--CCTC--------ACTTCAACTCAGAATGTTCCGCTTGCCGTAC    346
                     |.|||  |.||        |||.|             |||||..||||.|
BL00480___yea    451 TTTTTAACATCTGCCGGCGACTAC-------------CCGCTCTCCGTGC    487

BSNT_01079       347 TGCTTGG-------AGAAAACGGA-AAAGGT-------TTGCAGGCGCTA    381
                     | .||||       || |.|.||| |.||||       |||     .|||
BL00480___yea    488 T-TTTGGCCGGTTCAG-ATATGGAGACAGGTGAACTGATTG-----ACTA    530

BSNT_01079       382 CA--GAAGGCGGAAACATGCTATCAGCTGCTGGCAGCCAACGGC----TT    425
                     .|  ||||       |.|..||.||...|||  .|.|||  |||    ||
BL00480___yea    531 TATCGAAG-------CGTTTTACCAAAAGCT--TAACCA--GGCGGGTTT    569

BSNT_01079       426 TAAAAAAGGACAGTACTTACA---TCAGGTCAGCCATAT--TCTGGCCT-    469
                     |...|||||..|..|.||.||   ||   |||||||.||  |||.||.| 
BL00480___yea    570 TCGCAAAGGGAACGATTTGCAGTTTC---TCAGCCACATCCTCTCGCTTA    616

BSNT_01079       470 TGCAAAGTGAAAAAGAGCCCGAAATGCTTGT-TTCCGCTTGCAAACAGAT    518
                     |||   ..||..|.||..|.||...|||||| ..|||| |.|...|.|||
BL00480___yea    617 TGC---CGGAGCAGGATTCAGATCAGCTTGTCGCCCGC-TCCCTCCGGAT    662

BSNT_01079       519 ATATCAATCGATCACTGAATCTGTCAAAAA----------ACCAAAGGAT    558
                     |||     |||    ||||| ||.||||||          |||||||..|
BL00480___yea    663 ATA-----CGA----TGAAT-TGACAAAAAAGCATAAAAGACCAAAGCCT    702

BSNT_01079       559 TATCATTATCCAGACCTTGCTCTCCTCACATTTCT----------GGAAG    598
                     ...|||||.||.||..|.|..||.|||.|..|.||          |.||.
BL00480___yea    703 GTCCATTACCCGGAAATCGGACTGCTCGCGCTGCTTGAGAACGGCGAAAA    752

BSNT_01079       599 AGCCAGATATCAAAACGGTTTTGTG-CATCACT---------GACGAATT    638
                     ||.||.|.|              || |||||||         |.||.|||
BL00480___yea    753 AGACATAGA--------------TGCCATCACTATCATGGCAGGCGCATT    788

BSNT_01079       639 AAACCAG-GAAAAAGCT-TTTAAATGGCAAAAGGAAATGAATTTTAAAAT    686
                     .|| ||| ||.||| || ||.|..|||||.||.||.||||||.|.||||.
BL00480___yea    789 GAA-CAGCGATAAA-CTGTTCAGGTGGCAGAAAGACATGAATCTGAAAAC    836

BSNT_01079       687 TGCTGTCAGCCTCTATCTCAGTGAGCATATGGAGAAAAATC---------    727
                     .||.||||.|.|.||   || |||||       ||||||.|         
BL00480___yea    837 GGCCGTCAACTTGTA---CA-TGAGC-------GAAAAAACGGAAGACCC    875

BSNT_01079       728 --TGCTGATGGAATCAGGAC--TATACACCGCTATCGAAACAGTCATTCA    773
                       .|||..||||..||||.|  |||..|.|||  |.|||.|.||.|||||
BL00480___yea    876 GGCGCTTTTGGATACAGGGCTTTATCAAACGC--TTGAAGCTGTTATTCA    923

BSNT_01079       774 AGCGCAGCAGGCAGCCGCGACAGCT-GCCATCAT---CAGCTCAACAGCA    819
                     |||.||||||.|.||.||.|    | |||||.||   .|||||..|.|||
BL00480___yea    924 AGCACAGCAGACGGCAGCAA----TCGCCATTATGACAAGCTCTGCTGCA    969

BSNT_01079       820 GC----CAGCCATA---CTCATGATGGAAACTAA    846
                     ||    |||.||.|   |||||.|          
BL00480___yea    970 GCGTCTCAGGCAAACGGCTCATAA----------    993


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