Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01742 and BL00485

See Amino acid alignment / Visit BSNT_01742 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:14
# Commandline: needle
#    -asequence dna-align/BSNT_01742___yhfK.1.5803.seq
#    -bsequence dna-align/BL00485___yhfK.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01742___yhfK-BL00485___yhfK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01742___yhfK-BL00485___yhfK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01742___yhfK
# 2: BL00485___yhfK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 689
# Identity:     448/689 (65.0%)
# Similarity:   448/689 (65.0%)
# Gaps:          88/689 (12.8%)
# Score: 1338.5
# 
#
#=======================================

BSNT_01742___      1 ATGAAAGTGTTTTTAATCGGAGCGAACGGACAAATCGGGC----------     40
                     ||||||||||||.||.|.||.|||||||||||||||||||          
BL00485___yhf      1 ATGAAAGTGTTTGTAGTGGGGGCGAACGGACAAATCGGGCGCCGTTTGAC     50

BSNT_01742___     41 --AAAGACTCGTCTCTTT--ATTCCAAGATAATCCTGATCATTCCA--TC     84
                       ||||         |||  ||   .|||..|.|  ||.|||  ||  ||
BL00485___yhf     51 GAAAAG---------TTTGAAT---GAGAGCAGC--GAACAT--CAGGTC     84

BSNT_01742___     85 AGAGCGATGGTCAGAAAAGAAGAACA---GAAAGCGTCTCTTGAAGC--T    129
                     ||.||.|||||.|||||.|||||.||   |.||||    .|||||.|  |
BL00485___yhf     85 AGGGCAATGGTGAGAAATGAAGAGCAGGCGCAAGC----TTTGAAACAAT    130

BSNT_01742___    130 GCCGGTGCAGAAGCTGTGCTTGCGAATCTGGAGGGCAGCCCG--GAAGAA    177
                      |.||..|||||.|.|.|||.||.|||.|.||.||||  |||  |||...
BL00485___yhf    131 -CGGGAACAGAAACAGCGCTCGCTAATTTAGAAGGCA--CCGTTGAAAGC    177

BSNT_01742___    178 ATCGCCGCTGCGGCAAAAGGCTGTGACGCGATCATTTTCACAGCCGGTTC    227
                     |||||.|..|||||..|.|||||.||||||||..|.||.||.|||||.||
BL00485___yhf    178 ATCGCAGAAGCGGCGGAGGGCTGCGACGCGATTGTCTTTACCGCCGGCTC    227

BSNT_01742___    228 CGGCGGCAGCACAGGCTATGATAAAACGCTGCTGGTGGATCTT-GATGGA    276
                     .|||||||..||.|||..|||.||||||||..||||.|| ||| |||||.
BL00485___yhf    228 AGGCGGCAATACGGGCGCTGACAAAACGCTTTTGGTCGA-CTTGGATGGG    276

BSNT_01742___    277 GCGGCAAAAGCCATTGAAGCTGCGGACATTGCCGGAATCAAACGGTTTAT    326
                     ||||..|||.|.||.|||||.||.||.|..||.||.||....||.|||||
BL00485___yhf    277 GCGGTTAAAACGATCGAAGCCGCCGAAAAAGCAGGCATTCGCCGCTTTAT    326

BSNT_01742___    327 TATGATCAGCGCCCTGCAAGCCCATAACCGTGAAAATTGGAATGAGGCAC    376
                     ||||.|||||.|..||||.||.||...||||||||||||||||||.||..
BL00485___yhf    327 TATGGTCAGCACATTGCAGGCACACCGCCGTGAAAATTGGAATGAAGCGT    376

BSNT_01742___    377 TCAAACCTTATTATGTGGCCAAGCATTATGCTGATAAAATTCTGGAAGCG    426
                     |.||.||.||||||||.|||||.||||||||.|||...||.||.||||..
BL00485___yhf    377 TAAAGCCGTATTATGTCGCCAAACATTATGCGGATCGGATGCTTGAAGGC    426

BSNT_01742___    427 AGCGGTTTAACCTATACGATTATCCGTCCGGGAGGCCTTCGCAATGAGCC    476
                     ||||..||||.|||.|||||||||||||||||||||||....||.||.||
BL00485___yhf    427 AGCGAATTAAACTACACGATTATCCGTCCGGGAGGCCTGTTAAACGAACC    476

BSNT_01742___    477 TGGAAC-------GGGAACTGTTTCAGCAGCGAAGGATCTGGAGCGGGGA    519
                     .||.||       |.|||       |||.|||.|..||||.|||||.|||
BL00485___yhf    477 GGGCACAGGCCGGGTGAA-------AGCCGCGGAAAATCTTGAGCGCGGA    519

BSNT_01742___    520 TTTATTTCCCGTGAGGACGTTGCAAAAACGGTCATTGC----CTCTTTA-    564
                     ...|||.|.|||||.||.||.||..|.||..||.|.||    |||   | 
BL00485___yhf    520 ACGATTCCGCGTGAAGATGTGGCCGATACCATCTTGGCGGCGCTC---AC    566

BSNT_01742___    565 -GATGAGAAGA-ATACGGAAAATCGGGCCTTTGATCTGACAGAAGGAGAT    612
                      ||.|||.|.| ||.|.|    |||..|.||.|||.||......||.|||
BL00485___yhf    567 CGAGGAGCACACATTCCG----TCGTTCGTTCGATTTGGTTTCGGGTGAT    612

BSNT_01742___    613 ---ACGCCGATTGCCGAAGCATTGAAGAAACTATGA---    645
                        |||||   .|||||.||..|||  ||.|||| |   
BL00485___yhf    613 CAAACGCC---CGCCGAGGCGCTGA--AATCTAT-ATAA    645


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