Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03593 and BL00562
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:35
# Commandline: needle
# -asequence dna-align/BSNT_03593___prpD.1.5803.seq
# -bsequence dna-align/BL00562___prpD.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03593___prpD-BL00562___prpD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03593___prpD-BL00562___prpD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03593___prpD
# 2: BL00562___prpD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1508
# Identity: 988/1508 (65.5%)
# Similarity: 988/1508 (65.5%)
# Gaps: 157/1508 (10.4%)
# Score: 2915.5
#
#
#=======================================
BSNT_03593___ 1 ATGCCGAAAACGGATCG----------------TGTTATC--------GA 26
|| ||||||.||..| |||.||| ||
BL00562___prp 1 AT---GAAAACTGAAAGTCAAACGCTCCAAAACTGTGATCAATTGCTGGA 47
BSNT_03593___ 27 AGAAATCACAGACTATGTGCTTGAGAAA----GAGATTACTAGTGCCGAA 72
|||.|||.|.||||||..|.| ||| .|||||.|.||.|..|||
BL00562___prp 48 AGAGATCGCCGACTATACGGT----AAATGCCAAGATTTCAAGCGAAGAA 93
BSNT_03593___ 73 GCGTATACAACAGCGGGGCATGTATTGCTGGATACCCTGGGCTGCGGGAT 122
|||..|..|||.||..|..|.||.||..|||||||.|||||||||||.||
BL00562___prp 94 GCGATTGAAACCGCCCGTTACGTCTTAATGGATACACTGGGCTGCGGAAT 143
BSNT_03593___ 123 CTTGGCGCTACGGTATCCGGAATGCACAAAGCTGCTTGGCCCGATTGTTC 172
.||||||||....||||||||||||.|.||||..||.||||||||||..|
BL00562___prp 144 ATTGGCGCTCAAATATCCGGAATGCGCCAAGCATCTCGGCCCGATTGCCC 193
BSNT_03593___ 173 CAGG-AACGACTGTGCCGAATGGAAGCAAAGTGCCGGGAACGTCATATGT 221
|.|| |.||.| ||.|||||.||.|.|...||.|||||||||..||.||.
BL00562___prp 194 CGGGTACCGTC-GTCCCGAACGGCACCCGCGTCCCGGGAACGCAATTTGA 242
BSNT_03593___ 222 TCTCGATCCTG-TGAGGGCAGCGTTTAATATCGGCTGCATGATTCGCTGG 270
.||.||||||| |.|.||| ||.||||||||||||||||||||.||||||
BL00562___prp 243 GCTTGATCCTGTTCACGGC-GCCTTTAATATCGGCTGCATGATCCGCTGG 291
BSNT_03593___ 271 CTCGATTACAACGATACGTGGCTGGCGGCGGAGTGGGGGCATCCATCCGA 320
||||||||.|||||.||.|||||.|||||.||.|||||.|||||.||.||
BL00562___prp 292 CTCGATTATAACGACACATGGCTTGCGGCCGAATGGGGCCATCCGTCAGA 341
BSNT_03593___ 321 TAACTTGGGAGGAATCCTTGCC-GCTGCTGATTATGTATCAAGAGTGAG- 368
||||.|.||||..||..|.||| || ||.||.|||| |||..||..||
BL00562___prp 342 TAACCTCGGAGCGATTTTAGCCTGC-GCCGACTATG--TCAGCAGGCAGC 388
BSNT_03593___ 369 -GCTGTCTGAAGGAAAAGAGCCGTTAAC-AGTAAGCGACGTACTTGAGAT 416
|||..|.|..||.||.||.|||.|.|| |.||| |||.||.|| ||.
BL00562___prp 389 TGCTCGCGGCGGGCAAGGAACCGCTCACGATTAA-CGATGTCCT---GAC 434
BSNT_03593___ 417 G---ATGATCAAAGCACACGAGATCCAAGGTGTGCTGGCGTTAGAAAACA 463
| ||..|.||.||.||.||.||||||||.||.||.||..|.||.||||
BL00562___prp 435 GGCAATTGTTAAGGCTCATGAAATCCAAGGCGTCCTTGCTCTCGACAACA 484
BSNT_03593___ 464 GCTTAAATCGAGTTGGCCTTGACCATGTGCTGTTTGTCAAAGTTGCGACA 513
|||||||..||...||.||||||||||||||.||.||.|||||.||..|.
BL00562___prp 485 GCTTAAACAGAAACGGGCTTGACCATGTGCTATTCGTAAAAGTCGCCTCC 534
BSNT_03593___ 514 ACCGCTGTTGCGGCA-----AAGCTTTTGGGCGGCGGAAGAGAAGAAATC 558
||.||||| |||| | ||.|||||.|||..||.|.|.||..|.
BL00562___prp 535 ACTGCTGT---GGCATGCTCA--CTATTGGGGGGCACAAAACAGGATGTT 579
BSNT_03593___ 559 AAAAATGCGCTTTCGAATGCATGGATTGACAATGC-AGCATTGAGGACAT 607
|..|||||..|.||..|.||.|||.|.||.|||.| ||| .||.||||.|
BL00562___prp 580 ATCAATGCCGTCTCCCAGGCCTGGGTCGATAATTCAAGC-CTGCGGACGT 628
BSNT_03593___ 608 ACCGCCATTCACCAAATACAGGCTCGCGTAAATCATGGGCGGCAGGAGAT 657
||||||||.|.||.|||||.|||||||||||.||.|||||.||.||.|||
BL00562___prp 629 ACCGCCATGCTCCGAATACCGGCTCGCGTAAGTCCTGGGCAGCCGGTGAT 678
BSNT_03593___ 658 GCAACGAGCAGAGGTGT-----TCATTTGGCGCTGATGTCGTTAAAAGGG 702
||.||.|||.|.||.|| || |||.|||||.|.||.|||||.
BL00562___prp 679 GCGACTAGCCGCGGCGTGAGGCTC-----GCGATGATGACCTTGAAAGGC 723
BSNT_03593___ 703 GAAATGGGTTATCCGACAGCCTTGAGTGCACCGGGTTGGGGGTTCCAAGA 752
||||||||.|||...||.||.|||..|||.||....|||||.||.||.||
BL00562___prp 724 GAAATGGGATATAAAACCGCTTTGTCTGCTCCAATGTGGGGTTTTCAGGA 773
BSNT_03593___ 753 CGTTTTATTCAATAAG--AAAGAGATCAAGCTTGCCTGTCCGCTCGACGC 800
.||.|||||| ..|| |||||..|.|.|||.|||.|.|||||||||.|
BL00562___prp 774 TGTCTTATTC--GGAGGAAAAGAATTGACGCTCGCCAGACCGCTCGACTC 821
BSNT_03593___ 801 TTATGTCATGGAAAATGTGTTATTTAAAGTGTCTTATCCTGCGGAATTTC 850
|||||||||.||||||||..|.||||||.|.||.|||||.||.|||||.|
BL00562___prp 822 TTATGTCATCGAAAATGTCCTTTTTAAAATTTCGTATCCGGCTGAATTCC 871
BSNT_03593___ 851 ACGCCCAGACAGCGGCGGAGTGCGCCGTCATTCTTCACCCGCAGGTAAAG 900
||||.||.||.||.||.||...|||..|||..||||||||..|.||.|||
BL00562___prp 872 ACGCTCAAACGGCTGCTGAAGCCGCGATCAGGCTTCACCCTGAAGTGAAG 921
BSNT_03593___ 901 AACCGGATTGACGAGATTGACCGTGTTGTCATCAGAACGCATGAATCCGC 950
.||.|..||||.||.||.|.||...|.||.||||..|||||.|||||.||
BL00562___prp 922 GACAGACTTGATGACATCGGCCAAATCGTGATCACGACGCACGAATCGGC 971
BSNT_03593___ 951 TATCCGAATCATTGATAAAAAAGGCCCGCTCCACAATCCGGCAGACCGTG 1000
.|||||.||.||.||.||||..||.....|.|||||||||||.|||||||
BL00562___prp 972 CATCCGGATTATCGACAAAACGGGAGAATTACACAATCCGGCTGACCGTG 1021
BSNT_03593___ 1001 ATCACTGCCTCCAATACATTACAGCAATCGGTTTGCTTTTTGGTGATATC 1050
||||||||||.||.||.||.|||||.|||||..||.|.|..||.|||||.
BL00562___prp 1022 ATCACTGCCTTCAGTATATAACAGCGATCGGACTGATCTACGGCGATATT 1071
BSNT_03593___ 1051 ACGGCACAGCATTATGAAGCTGAAACAGCGAGTGATCCGAGA-ATAGATA 1099
||.||..|.||||||||||..|||||.|||....||||| || ||.||.|
BL00562___prp 1072 ACCGCTGACCATTATGAAGACGAAACCGCGCAAAATCCG-GAGATCGACA 1120
BSNT_03593___ 1100 AACTTCGTGATAAAATGGAGGTGACT-GAAAATAAAACA-TATACCGAGG 1147
..||.||.||.||||| ||.|..|.| ||||| .||||| |||.|||..|
BL00562___prp 1121 GGCTGCGCGAAAAAAT-GACGACAGTCGAAAA-CAAACAGTATTCCGTCG 1168
BSNT_03593___ 1148 ATTATTTGAAACCTGATAAACGTTCCATCTCAAATGCCGTTCAGGTTCAT 1197
|||||.|..|.||.||.|||||.||.|||.|.||.||.|||||.||...|
BL00562___prp 1169 ATTATCTCGACCCGGAAAAACGCTCGATCGCCAACGCTGTTCAAGTGTTT 1218
BSNT_03593___ 1198 TTTAAAGACGGAACGAGCACGGAAA------TGGTGGAATGTGAGTTTCC 1241
|.|||||||||.||...|.|||||| .|||.||| |.|
BL00562___prp 1219 TATAAAGACGGCACACACTCGGAAAAAATCGCGGTCGAA--------TAC 1260
BSNT_03593___ 1242 CC--TCGGCCATCGTTTT-------CGAAGAGAGGAAGCAGTGCCGAAAC 1282
|| |.||.||||| ||.|..|||| ||| |.||| |
BL00562___prp 1261 CCGATTGGTCATCG----GCGCCGCCGCAACGAGG--GCA-TCCCG---C 1300
BSNT_03593___ 1283 TGTTGGAAAAG------TTTTCTGACAATCTCAAAACCCATTATCC---- 1322
|.|| ||||| ||.|| .|.|||.|.|||||.|..|.|||
BL00562___prp 1301 TCTT--AAAAGACAAATTTATC-AATAATTTAAAAACGCGCTTTCCGGCG 1347
BSNT_03593___ 1323 TGATAAACAGCACAAACACATTTATGAGCGCTGTACCAGCT--ATG---- 1366
.|..||.|.|.||.| ||.|.||| ||.||| |||
BL00562___prp 1348 GGGCAAGCGGAACGA--------ATCAACGC----CCTGCTGAATGATCC 1385
BSNT_03593___ 1367 --AGACATTACAAACGATGCGC--GTAAATGAATTCGTAGACATGTTCTG 1412
|.|.||| ||.||.|||.| |||...||.|||.|.||..|||| ||
BL00562___prp 1386 TCACAGATT--AAGCGGTGCACCTGTACCGGATTTCATGGAATTGTT-TG 1432
BSNT_03593___ 1413 -CATGTAA 1419
|||.||.
BL00562___prp 1433 TCATTTAG 1440
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