Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03150 and BL00577
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:49
# Commandline: needle
# -asequence dna-align/BSNT_03150___yocR.1.5803.seq
# -bsequence dna-align/BL00577___yocR.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03150___yocR-BL00577___yocR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03150___yocR-BL00577___yocR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03150___yocR
# 2: BL00577___yocR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1401
# Identity: 974/1401 (69.5%)
# Similarity: 974/1401 (69.5%)
# Gaps: 123/1401 ( 8.8%)
# Score: 3307.5
#
#
#=======================================
BSNT_03150___ 1 GTG---AAGGAAGCAAATCAATGGTCTTCGAAGCTCGGCTTTATTTTAGC 47
||| ||..||..||||..||||||.||.|||||.||.|||||.|||||
BL00577___yoc 1 GTGGAAAATAAACAAAATATATGGTCATCAAAGCTTGGATTTATCTTAGC 50
BSNT_03150___ 48 CGCGGCAGGATCAGCTATCGGGCTTGGTGCGATATGGAAATTCCCATATG 97
..||||.||.||.||.||||||||.||.|||||||||||.||.||.||||
BL00577___yoc 51 TTCGGCCGGTTCGGCAATCGGGCTCGGCGCGATATGGAAGTTTCCTTATG 100
BSNT_03150___ 98 TTGCCGGAACCAGCGGAGGAGGCGCATTTTTACTTATTTTTATTTTATTT 147
||||||||||.|||||.||.||.||||||||||||||.||||||.|.|||
BL00577___yoc 101 TTGCCGGAACAAGCGGCGGCGGAGCATTTTTACTTATGTTTATTCTTTTT 150
BSNT_03150___ 148 ACGGTTTTAATCGGACTGCCTTTATTGTTAGGTGAATTCATCATAGGCAG 197
||..|.||.||.||.||.||||||||..|.|..||.|||||.||.|||||
BL00577___yoc 151 ACTTTATTGATTGGGCTTCCTTTATTAATGGCGGAGTTCATTATCGGCAG 200
BSNT_03150___ 198 AAGAACACAGAAAGATGCCGTTCAGTCCTATAAAACACTTGCTCCAGGAA 247
||..||.||.||||||||.|||.|.||||||||....||||||||.||..
BL00577___yoc 201 AAAGACTCAAAAAGATGCGGTTGAATCCTATAAGGAGCTTGCTCCCGGCT 250
BSNT_03150___ 248 CGAAGTGGCATTGGATCGGTTATTTAGGCATGGTGACGTGCTTTATTCTT 297
||...|||||.|||.|.||.....|.|||||..|.|||||.||.|||||.
BL00577___yoc 251 CGCTCTGGCACTGGGTTGGGCGCCTCGGCATTATCACGTGTTTCATTCTG 300
BSNT_03150___ 298 CTATCTTTCTACAGTGTCGTAGGCGGATGGATTTTAATTTATATTATAAA 347
||.||||||||.|||||.||.|||||.|||||..|.|||||||||.|.||
BL00577___yoc 301 CTGTCTTTCTATAGTGTTGTCGGCGGCTGGATCATCATTTATATTGTCAA 350
BSNT_03150___ 348 AGGCTTCACTGG-----------------CGGTTTATCGCAAACATCTGG 380
|||..|.||.|| |||.|||| .|.||
BL00577___yoc 351 AGGGCTGACCGGTGAACTGTCAAGAAGTACGGATTAT--------GCCGG 392
BSNT_03150___ 381 TTTT------GATACGATATTTGCAAGTACCATTTCAAATCCTTATTTGG 424
|.|| ||.||| |||.|||||||.|||.|.|
BL00577___yoc 393 TCTTTTCGGGGAGACG---------------ATTGCAAATCCGTATCTCG 427
BSNT_03150___ 425 CTGTAGGAGGCCAG-CTGCTCTTTATGGTGGTAACAATTTTAGTTGTTGC 473
.|.||||..||||| .||| .|||||..|..||||.||..|.||||||||
BL00577___yoc 428 TTCTAGGGAGCCAGTTTGC-ATTTATCATCATAACGATCCTTGTTGTTGC 476
BSNT_03150___ 474 AAAAGGGGTAAGCAGCGGAATTGAAAAAGCAAGCCAAGTATTA--ATGCC 521
||||||.||.||.||||||||.|||||.||.|| ||||| ||| |||||
BL00577___yoc 477 AAAAGGAGTCAGAAGCGGAATAGAAAAGGCGAG-CAAGT-TTATGATGCC 524
BSNT_03150___ 522 GGCGCTTTTTCTATTATTCATC--ATTTTAATGGTGCGTTCGGTTACACT 569
.||.||.|| .||||||..|| .||||.||.||.||||||.|.|||||
BL00577___yoc 525 TGCTCTGTT--CATTATTTTTCTGCTTTTGATCGTTCGTTCGCTCACACT 572
BSNT_03150___ 570 TGATGGCGCGATGGAAGGAATCAAATTTTTCCTCATGCCTGATTTAACTG 619
|...||..|.|||||.||..|..|.||||||.|.|..||||||.| |.
BL00577___yoc 573 TCCCGGTTCAATGGAGGGCTTGGAGTTTTTCTTAAAACCTGATCT---TT 619
BSNT_03150___ 620 CA---ATTGATGCCAATACCATTTTATATGCAATGGGACAATCCTTTTTC 666
|| ||..|.|||.|.||..|..|.|.|||..|.|||||||||||||||
BL00577___yoc 620 CACATATCAAAGCCGAAACGGTGCTGTTTGCGCTTGGACAATCCTTTTTC 669
BSNT_03150___ 667 TTATTAAGTGTCGGTGTATCTGTCATGGTAACGTATAGCGCTTATTTAGA 716
|...||||.||||||||.||.||.|||||||||||.|||.||||||||..
BL00577___yoc 670 TCGCTAAGCGTCGGTGTTTCCGTGATGGTAACGTACAGCTCTTATTTATC 719
BSNT_03150___ 717 GAAACAGGAAAATCTGGTACAGTCCGCTGTATCTGTAACTGTTATGAACA 766
||||.|.|||||.||.||||||||.||.|||||.||.|| ||
BL00577___yoc 720 GAAAAAAGAAAACCTTGTACAGTCAGCCGTATCAGTGAC----AT----- 760
BSNT_03150___ 767 TGCT---TGTTGCTGTA------ATGGCCGGAATTGCGATTTTTCCAGCT 807
|||| |||..||||| .|.|||||..|||||||||||||.||.
BL00577___yoc 761 TGCTCAATGTATCTGTAGCGATTCTTGCCGGGTTTGCGATTTTTCCGGCC 810
BSNT_03150___ 808 GTATTTTCATTCGG-------CCTCAAGCCAGACCAAGGCCCGGTTCTGT 850
||.||||||||||| |||.|.||| ||||||.|.||||
BL00577___yoc 811 GTTTTTTCATTCGGATTATCTCCTGATGCC-------GGCCCGATGCTGT 853
BSNT_03150___ 851 TATTTAACGTTCTGCCGACTGTGTTTAATCAAATGCCGTTCGGAATTATC 900
|||||||.||.||||||.|.||.|||.||.|.|||||.||.|||||.|||
BL00577___yoc 854 TATTTAATGTGCTGCCGTCAGTCTTTCATAAGATGCCTTTAGGAATCATC 903
BSNT_03150___ 901 TTTTTATTAGCATTTTTACTTCTATTTTTATTTGCTGCATTGACATCTGC 950
||||||||.||.|||.|.||..||||||||||||||.||.||||.|||||
BL00577___yoc 904 TTTTTATTGGCGTTTCTGCTCTTATTTTTATTTGCTACACTGACGTCTGC 953
BSNT_03150___ 951 TTTTTCAATGCTGGAAAT-----TTTGGTCGCAGTAC-TGTCGAAAGGCG 994
.|||||||||||.||||| |||..|| | ||||.|||||.|
BL00577___yoc 954 ATTTTCAATGCTTGAAATCCTTGTTTCTTC------CTTGTCAAAAGGGG 997
BSNT_03150___ 995 ATGTCAATAAGAGAAAACGA----TTCGCTTGGTTAGGCGGAATTGCTAT 1040
|| ..|||||.||.|| | |||||||||...||.||||||||.||
BL00577___yoc 998 AT---CCTAAGAAAAGAC-AGGCTTTCGCTTGGGCGGGAGGAATTGCGAT 1043
BSNT_03150___ 1041 TTT--TATTGTCGGTGTGCCGTCTGCATTGTCATACGGTGT-CTTAAGTG 1087
||| ||| |||||.|.||.||.||||||||||||||.|| |||.|| |
BL00577___yoc 1044 TTTCCTAT--TCGGTATTCCTTCAGCATTGTCATACGGCGTGCTTCAG-G 1090
BSNT_03150___ 1088 ACGTCTCTATATTTCATCTGTCTATTTTTGATGCGGCCGACTATCTTGTG 1137
|.||.||.||.|||.||||.||.||||||||||||||.||.||||||||.
BL00577___yoc 1091 ATGTGTCGATTTTTAATCTATCCATTTTTGATGCGGCGGATTATCTTGTC 1140
BSNT_03150___ 1138 AGCAATATTTTAATGCCGTTAGGTGCGTTACTGATTTCGATTTTTGTCCC 1187
||||||||.|||||||||.|.||.||.||.||.|||.|..||||.||.||
BL00577___yoc 1141 AGCAATATATTAATGCCGCTCGGCGCTTTGCTAATTGCCGTTTTCGTGCC 1190
BSNT_03150___ 1188 GCTAAAAATACCGAAACAGGATTTGTTTGACGAGCTGAAAAGCGGTTCCA 1237
|||.|||||.||||||.|.||..|.||||.|||..|||||...||.||.|
BL00577___yoc 1191 GCTCAAAATTCCGAAAGACGAGCTTTTTGCCGAATTGAAAGAAGGCTCTA 1240
BSNT_03150___ 1238 ATCTCAAACGAAAGTGGTTTGCGGTTTGGCTGCTGCTTATTCGATATTTA 1287
|..|||...||||.||||||||.|..|||||.|||||.||.||.||...|
BL00577___yoc 1241 AAATCAGCAGAAAATGGTTTGCAGCCTGGCTTCTGCTGATCCGCTACGCA 1290
BSNT_03150___ 1288 TCTCCTGTTGCCATTATCATCGTGTTTTTGCATGTGGTAGGGATTTTTTA 1337
.||||..|.|.||||||..||||.||||||.|||...|.|||.|.|||||
BL00577___yoc 1291 GCTCCAATCGTCATTATTGTCGTCTTTTTGGATGCTATCGGGGTATTTTA 1340
BSNT_03150___ 1338 A 1338
|
BL00577___yoc 1341 A 1341
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