Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03148 and BL00583

See Amino acid alignment / Visit BSNT_03148 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:49
# Commandline: needle
#    -asequence dna-align/BSNT_03148___sqhC.1.5803.seq
#    -bsequence dna-align/BL00583___sqhC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03148___sqhC-BL00583___sqhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03148___sqhC-BL00583___sqhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03148___sqhC
# 2: BL00583___sqhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2044
# Identity:    1298/2044 (63.5%)
# Similarity:  1298/2044 (63.5%)
# Gaps:         299/2044 (14.6%)
# Score: 3688.0
# 
#
#=======================================

BSNT_03148___      1 ---------ATGGGCACACTTCAGGA---GAAAG---TGAGGCGTTTTCA     35
                              ||      |||..|.||   |||||   |.|||      ||
BL00583___sqh      1 TTGCGATCTAT------ACTAGAAGACGTGAAAGCTTTCAGG------CA     38

BSNT_03148___     36 AAAGAAAACCATTACCGAG-TTAAGAGACAGGCAAA-ATGCTGATGGTTC     83
                     ||||   ||..|..|.||| ||.| |.||||.|||| || ||||||||||
BL00583___sqh     39 AAAG---ACGCTCGCAGAGCTTCA-AAACAGACAAAGAT-CTGATGGTTC     83

BSNT_03148___     84 ATGGACATTTTGCTTTGAAGGACCAATCATGAC--AAATTCCTTTTTTAT    131
                     .|||...|||||.||||||||.||..|.|||||  |.|.|  |||||.||
BL00583___sqh     84 GTGGCGGTTTTGTTTTGAAGGGCCCGTGATGACGGACAGT--TTTTTCAT    131

BSNT_03148___    132 TTTGCTCCTTACCTCACTAGATGAAGGCGAAAATGAAAAAGAACTGATAT    181
                     |.||.|.||.||.|||||      .|||||..|.||     ..||..|.|
BL00583___sqh    132 TCTGATGCTGACATCACT------CGGCGATCAGGA-----CTCTTCTCT    170

BSNT_03148___    182 CATC-----CCTTGCAGCCGGCATTCATGCAAAACAGCAGC-CAGACGGC    225
                     ||||     .|||||.|...|.||.|.|.|||..||| ||| .|||||||
BL00583___sqh    171 CATCGCAAGTCTTGCTGAACGAATCCGTTCAAGGCAG-AGCGAAGACGGC    219

BSNT_03148___    226 ACATTTATCAACTATCCCGACGAAACGTGC-GGAAATCTAACGGCTACCG    274
                     .|.|||..|||..|.||.||.|||| |.|| ||.|||||.||.||.||.|
BL00583___sqh    220 GCGTTTCGCAATCACCCGGATGAAA-GAGCAGGCAATCTGACCGCGACAG    268

BSNT_03148___    275 TCCAAGGATATGTCGGGATGCTGGCTTCAGG-----ATGTTTTCAC---A    316
                     ||||.||.|||..|||.|||||||||||.||     |||     ||   |
BL00583___sqh    269 TCCAGGGCTATACCGGAATGCTGGCTTCGGGGCTCTATG-----ACCGGA    313

BSNT_03148___    317 GATCTGAGCCGCACATGAAGAAAGCTGAACAATTTATCA---TCTCATAT    363
                     .|.||   |||||.|||.|||||||.|||...|||||.|   .|.||   
BL00583___sqh    314 AAGCT---CCGCATATGCAGAAAGCCGAAGCTTTTATTAAGGACGCA---    357

BSNT_03148___    364 GGCGGTTTGA--GACATGTTCATTTTATGACAAAATGGATGCTTGCCGCG    411
                     |||||.||||  |.|  ||.||.||||||||.||.||||||||.|||||.
BL00583___sqh    358 GGCGGATTGAAGGGC--GTCCACTTTATGACGAAGTGGATGCTCGCCGCC    405

BSNT_03148___    412 AACGGGCTTTACCCTTGGCC---TGCTTTGTATTTACCATTATCACTCAT    458
                     |||||.||.||.||.|||||   .||   .|||.|.||..|.||..|..|
BL00583___sqh    406 AACGGTCTGTATCCATGGCCGAGAGC---CTATATTCCGCTCTCGTTTTT    452

BSNT_03148___    459 GGCGCTCCC--CCCAACATTGCCGATTCATTTCTATCAGTTCAGCTCATA    506
                     |..|.||||  ||.|  .||.|||.|.|||||.||.||.||||||.||||
BL00583___sqh    453 GCTGATCCCGTCCTA--TTTCCCGCTGCATTTTTACCATTTCAGCACATA    500

BSNT_03148___    507 TGCCCGTATTCATTTTGCTCCTATGGCTGTAACACTCAATCAGCGATTTG    556
                     .||..|.||||||||||..||.|||||..|.||..|.||||.|||| ||.
BL00583___sqh    501 CGCAAGAATTCATTTTGTCCCCATGGCCATTACGTTTAATCGGCGA-TTC    549

BSNT_03148___    557 TCCTTATTAACC--GCAATATTTCATCTCTTCGCCATCTCGATCCGCA--    602
                     ||.|||..||.|  .||| ||....||.|||||.||.||.|||  |.|  
BL00583___sqh    550 TCTTTAAAAAACAACCAA-ATCGGCTCGCTTCGGCACCTGGAT--GAAGC    596

BSNT_03148___    603 CATGACAAAAAATCCTTTCACTTGGCT-----TCGGTCTGATGCTTTCGA    647
                     ||||.|||||||.|||.||...|||||     ||.|     .||.||.||
BL00583___sqh    597 CATGTCAAAAAACCCTCTCGAATGGCTGAACATCCG-----CGCCTTTGA    641

BSNT_03148___    648 TGAAAGAGATCTCACGTCTATTTTGTCA-----CATTGGAAAC-GCGTTT    691
                     .|||||| |.||    ||||||.|.|||     ||.||||||| || |.|
BL00583___sqh    642 CGAAAGA-ACCT----TCTATTCTTTCAATCTGCAATGGAAACAGC-TCT    685

BSNT_03148___    692 TTC-ATGCACCATTTGCTT---TTCAGCAGCTGGGCCTACAGACAGCTAA    737
                     ||| |||..|    .||||   |.||.|||||.||..|..||.|.|..||
BL00583___sqh    686 TTCAATGGCC----GGCTTACGTCCATCAGCTCGGATTTGAGGCCGGCAA    731

BSNT_03148___    738 AACGTATATGCTGGACCGGATTGAAAAAGATGGAACATTATACAGCTATG    787
                     ||..||||||||||||.|.||.|||.||||.|||||..||||||||||||
BL00583___sqh    732 AAAATATATGCTGGACAGAATCGAAGAAGACGGAACGCTATACAGCTATG    781

BSNT_03148___    788 CGAGCGCAACCATATATATGGTTTACAGCCTTCTGTCACTTGGTGTGTC-    836
                     |||||||.|||||.|..|||.||||||||||.||..|..|.||..|.|| 
BL00583___sqh    782 CGAGCGCGACCATGTTCATGATTTACAGCCTGCTTGCGATGGGAATATCT    831

BSNT_03148___    837 ----ACGCTATTCTCCTATTATCAGGAGAGCGATTACCGGCATTAAA---    879
                         |||     |.||..||.|||..|.|||..|.|.|||.||.|||   
BL00583___sqh    832 AAAAACG-----CCCCCGTTGTCAAAAAAGCAGTCAGCGGAATCAAAAGT    876

BSNT_03148___    880 ------TCACTGGTGACTAAATGCAACGGGATTCCTTATCTGGAAAACTC    923
                           ||| |..|| |..||.|.||.|||    |..||.||||||||||
BL00583___sqh    877 CTTATTTCA-TCATG-CGGAAAGGAAGGGG----CCCATTTGGAAAACTC    920

BSNT_03148___    924 TACTTCAACTGTTTGGGATACAGCTCTAATCAGCTATGCCCTTCAAAAAA    973
                     .|||||.||.||.||||||||.||.||.||||||||||||.|.||..||.
BL00583___sqh    921 AACTTCCACCGTCTGGGATACGGCCCTCATCAGCTATGCCATGCAGGAAT    970

BSNT_03148___    974 ATGGTGTGACCGA--AACGGATGGCTCTGTTA---CAAAAGCAGCCGACT   1018
                     ..||.|||.|.||  |||  ||   |||...|   ||...||||||||||
BL00583___sqh    971 CCGGAGTGCCTGAACAAC--AT---TCTTCCACCTCATCGGCAGCCGACT   1015

BSNT_03148___   1019 TTTTGCTAGAACGCCAGCATACCAAAACAGCAGATTGGTCTGTCAAAAAT   1068
                     ...|.||..||.|.||||||...||||.|||.||.|||.|||||..||||
BL00583___sqh   1016 ACCTTCTCAAAAGACAGCATGTGAAAAAAGCGGACTGGGCTGTCTCAAAT   1065

BSNT_03148___   1069 CCAAATTCA----GTTCCTGGCGGCTGGGGGTTTTCAAACATTAATACAA   1114
                     ||    |||    ||.||||||||.|||||.||||||.||||.|||||||
BL00583___sqh   1066 CC----TCAAGCGGTCCCTGGCGGGTGGGGTTTTTCACACATCAATACAA   1111

BSNT_03148___   1115 ATAACCCTGACTGTGACGACACTGCAGCCGTTTTAAAGGCGATTCC----   1160
                     |.||.||.||.|..|||||.||.||.||.|..|||||.||.|||||    
BL00583___sqh   1112 ACAATCCCGATTTGGACGATACCGCTGCGGCATTAAAAGCTATTCCGTTT   1161

BSNT_03148___   1161 ---CCGCAATCATTCTCCTGCAGCATGGGAGCGGGGGGTATCTTGGCTTT   1207
                        |.||       .|||.|..||||||.|.||||||.|..|.|||||||
BL00583___sqh   1162 CAACGGC-------GTCCGGATGCATGGAACCGGGGGCTCGCCTGGCTTT   1204

BSNT_03148___   1208 TATCGATGCAAAACAATGACGGCGGATTTTCTGCTTTTGAAAAAAACGTG   1257
                     ||||.|||||||||||.|||||.||.|||.|.||.|||||||||.|.||.
BL00583___sqh   1205 TATCCATGCAAAACAAGGACGGAGGGTTTGCGGCATTTGAAAAAGATGTT   1254

BSNT_03148___   1258 AACCATCCACTGATCCGCCTTCTGCCGCTTGAATCCGCCGAGGACGCTGC   1307
                     .|||||||.||.||.||...|||||||||.|||||.||||..||.||.||
BL00583___sqh   1255 GACCATCCGCTTATTCGAAATCTGCCGCTCGAATCTGCCGCTGAGGCAGC   1304

BSNT_03148___   1308 AGTTGACCCTTCAACCGCCGACCTCACCGGACGAGTACTGCA-CTTTTTA   1356
                     |||.||.||.|||||.||.|||.|.||||||||.||.||.|| ||..|..
BL00583___sqh   1305 AGTCGATCCGTCAACGGCAGACTTGACCGGACGCGTTCTTCATCTGCTCG   1354

BSNT_03148___   1357 GGCGAGAAAGTTGGC--TTCACAGAAAAACAACAACATATTCAACGCGCA   1404
                     ||| ..||||  |||  ||||||||.||.||.|......|.|..|||||.
BL00583___sqh   1355 GGC-TTAAAG--GGCGGTTCACAGATAACCATCCTGCGGTCCGGCGCGCC   1401

BSNT_03148___   1405 GTGAAGTGGCT--ATTCGAACATCAGGAACAAA----ATGGGTCTTGGTA   1448
                     .|.|.||||||  ||  .|.||||||    |||    |.||.||||||||
BL00583___sqh   1402 CTCAGGTGGCTTGAT--CATCATCAG----AAAGCGGACGGCTCTTGGTA   1445

BSNT_03148___   1449 CGGCAGATGGGGTGTTTGCTACATTTACGGCACTTGGGCTGCTCTTACTG   1498
                     .|||||||||||.||.||||..||||||||.||.|||||.||.||.||.|
BL00583___sqh   1446 TGGCAGATGGGGCGTCTGCTTTATTTACGGTACATGGGCCGCACTCACCG   1495

BSNT_03148___   1499 GTATGCATGCATG-CGGGGTTGACCGAAAGCATCCCG--GTAT---ACAA   1542
                     |||||.|.|| || ||||||| .|||   .||.||.|  ||.|   |.||
BL00583___sqh   1496 GTATGAAAGC-TGTCGGGGTT-TCCG---CCAACCAGACGTCTGTCAAAA   1540

BSNT_03148___   1543 AAG-GCTCTGCGTTGGCTCAAATCCATACAAAATGATGACGGAAGCTGGG   1591
                     ||| |.|||.|  |||||.|||||.||.||...|||.|||||||||||||
BL00583___sqh   1541 AAGCGATCTCC--TGGCTAAAATCGATCCAGCGTGAAGACGGAAGCTGGG   1588

BSNT_03148___   1592 GAGAATCCTGCAAAAGCGCCGAAATCAAAAC-ATATGTACCGCTTCATAG   1640
                     |||||||.|||||||||...| ||.|.||.| .|.|||.||.|||||...
BL00583___sqh   1589 GAGAATCTTGCAAAAGCTGTG-AAGCGAAGCGTTTTGTCCCTCTTCACTT   1637

BSNT_03148___   1641 AGGAACCATTGTACAAACGGCCTGGGCTTTAGACGC---TTTGCTCACAT   1687
                     .|||||..||||.|||.|..|.|||||..|.||.||   |||||      
BL00583___sqh   1638 TGGAACAGTTGTTCAATCTTCATGGGCGCTGGAGGCGCTTTTGC------   1681

BSNT_03148___   1688 ATGAAAATTCCGAACATCCGTCTG---------TTGTGAAAGGCATGCAA   1728
                        ||.||   ||.|.||||..||         |..|.|||||.||.|..
BL00583___sqh   1682 ---AATAT---GAGCGTCCGGATGACCCACAGATCATAAAAGGGATCCGT   1725

BSNT_03148___   1729 TACCTTACCG----ACAGC---AGTTCGCAT-AGCGCCGATAGCCTCGCG   1770
                     |..||.|.||    ||| |   ||.||||.| |||       |.||||..
BL00583___sqh   1726 TTTCTCATCGATGAACA-CGAAAGCTCGCGTGAGC-------GACTCGAA   1767

BSNT_03148___   1771 TATCCAGCAGGGATCGGATTGCCGAAGCAATTTTATATTCGCTATCACAG   1820
                     ||.||..|.||.|||||..|||||||.|||||.||.||.|||||||||||
BL00583___sqh   1768 TACCCGACGGGAATCGGGCTGCCGAACCAATTCTACATCCGCTATCACAG   1817

BSNT_03148___   1821 TTATCCATATGTATTCTCTTTGCTGGCTGTCGGGAAATATTTAG---ATT   1867
                     ||||||.|.|||.||.||.|||||.|||           |..||   |||
BL00583___sqh   1818 TTATCCTTTTGTGTTTTCATTGCTCGCT-----------TCAAGCGCATT   1856

BSNT_03148___   1868 CTATTGAAAAGGAGACAGC--AAATGAAACGTGA----------   1899
                      ||||.||||      |||  ||||||   |.||          
BL00583___sqh   1857 -TATTAAAAA------AGCGGAAATGA---GGGAGACATATTGA   1890


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