Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02782 and BL00586

See Amino acid alignment / Visit BSNT_02782 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:32
# Commandline: needle
#    -asequence dna-align/BSNT_02782___ymaC.1.5803.seq
#    -bsequence dna-align/BL00586___ymaC.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02782___ymaC-BL00586___ymaC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02782___ymaC-BL00586___ymaC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02782___ymaC
# 2: BL00586___ymaC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 803
# Identity:     452/803 (56.3%)
# Similarity:   452/803 (56.3%)
# Gaps:         187/803 (23.3%)
# Score: 1154.5
# 
#
#=======================================

BSNT_02782___      1 ATG-AGAAGATTTTTACTAAATG---TCAT---ATTAGTCTTAGC--CAT     41
                     ||| ||||          |||.|   ||||   .||.||..|.||  ||.
BL00586___yma      1 ATGAAGAA----------AAAAGTACTCATCTACTTGGTGATCGCAGCAG     40

BSNT_02782___     42 TGTCTTGTTCTTAAGATA-----TGTTCATTACTCAT-----TGG-----     76
                     ||          |.||||     |||         ||     |||     
BL00586___yma     41 TG----------ATGATAAATGGTGT---------ATACAGGTGGTCCGA     71

BSNT_02782___     77 ------AACCTG----AACCATCAAATC--AGCCAGATACATATTCA--A    112
                           ||||.|    |.|.||||.|||  .|||.|..|||.||.||  |
BL00586___yma     72 AAAAACAACCCGGGAAAGCTATCAGATCCAGGCCGGGGACAAATACAAGA    121

BSNT_02782___    113 ATTTCA-------GCAGCTTAGCAGAGAATGAGAGCCCAGCCGATTACGA    155
                     |.||||       ||||       ||.||.||.|   .|..||..||.||
BL00586___yma    122 ACTTCAAGGAATTGCAG-------GAAAACGAAA---AAAGCGGCTATGA    161

BSNT_02782___    156 TATTTCATATAATGAGAAAAAAGGAAGC-AAAGTCTTAATTATGTCTCCG    204
                     .|||...|||.|.||.|||...|||||| |..|| |||||..|.||.||.
BL00586___yma    162 CATTGATTATCACGAAAAAGCGGGAAGCGACTGT-TTAATCTTTTCGCCC    210

BSNT_02782___    205 CATGGCGGAAGAATTGAAGGCGGAGTAAGTGAGCTTGTTCGTTATTTCAA    254
                     |||||.||||||||.|||||||||||.||.||||||||.||...|||.||
BL00586___yma    211 CATGGAGGAAGAATAGAAGGCGGAGTGAGCGAGCTTGTCCGAGCTTTTAA    260

BSNT_02782___    255 TAATGAATACTCTACATACCTGTTTGAAG-------GGTTG-----AAGT    292
                     |.||||.||.||.||.||..|.||.||||       ||.||     ||.|
BL00586___yma    261 TGATGATTATTCAACTTATTTATTCGAAGGAAAAAAGGATGAGAACAACT    310

BSNT_02782___    293 CCCACGATAACCAAACGCTGCACATTACAAGCACCAACTTTGATGAGCCA    342
                     |   ||||         ||.||.|||||.|||||.||||||||.|||||.
BL00586___yma    311 C---CGAT---------CTTCATATTACCAGCACAAACTTTGACGAGCCT    348

BSNT_02782___    343 TTGGCAAAAAAGAAAATCAAGGAGCATCAATATGTGGTGGCTTTTCACGG    392
                     .|||||....|||||||.||.||.||.|..|||....|.||.||.|||||
BL00586___yma    349 CTGGCATTGCAGAAAATAAAAGAACACCGCTATACCATCGCATTCCACGG    398

BSNT_02782___    393 ATATAAAGGGGA------GAACAAGAATACGCTTGTCGGGGGAACAGACC    436
                     .|||...||.||      |.||      ||||||||.||.|||||.|||.
BL00586___yma    399 CTATTCGGGCGACCGTCCGCAC------ACGCTTGTGGGAGGAACGGACA    442

BSNT_02782___    437 GAAAGCGGGCGAAAATGATTGTGAGAGCCCTTGAGCGGAGA------GGG    480
                     ||||||.|||.|||...||.||.|.|.|.||      ||.|      |..
BL00586___yma    443 GAAAGCTGGCAAAAGCCATCGTCAAATCTCT------GAAAAAGTCTGAC    486

BSNT_02782___    481 TTTTCCGCTGAGTTAGCGTCGTCTAAAAGCGGTC-------TTGCTGGAT    523
                     ||||||||.||.||.|       |.||||.||.|       ||||.||| 
BL00586___yma    487 TTTTCCGCAGAATTGG-------TCAAAGTGGACGGGAAATTTGCCGGA-    528

BSNT_02782___    524 TGAATGC---CGAAAACATTAATAACCAAGGGGAAACGGGGCTAAGTATC    570
                       |.|||   .||||||||.|||||..||.|..|.||.||..|.||..|.
BL00586___yma    529 --ACTGCTGAGGAAAACATCAATAATGAAAGCCAGACAGGAATGAGCGTG    576

BSNT_02782___    571 CAGCTGGAAATCAGC-CGTGAGCAGAGAGAAGCATTTTTTGATGATTTTT    619
                     |||||.||||||||| || |..|||||..|||..|||||.||.||.||||
BL00586___yma    577 CAGCTTGAAATCAGCACG-GCTCAGAGGAAAGAGTTTTTCGAAGACTTTT    625

BSNT_02782___    620 ATTATAAAAATAGAAAATACACAA-----AGAACAGT--GAATTTTATGC    662
                     ..||||||.|.||..||.|.||||     ||||||.|  |||       .
BL00586___yma    626 CCTATAAAGAGAGGGAAGAGACAAAAACGAGAACATTCCGAA-------A    668

BSNT_02782___    663 TTATGTCAGTGCGATC--AAAGGTG-TCCTGGAAAAA----GAGTATTTG    705
                     .|||||||..|||.||  .|||||| |.|.|||.|.|    ||       
BL00586___yma    669 ATATGTCAAGGCGGTCCGCAAGGTGCTGCAGGACAGATGCTGA-------    711

BSNT_02782___    706 TAA    708
                        
BL00586___yma    711 ---    711


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