Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04109 and BL00611
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_04109___leuA.1.5803.seq
# -bsequence dna-align/BL00611___leuA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04109___leuA-BL00611___leuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04109___leuA-BL00611___leuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04109___leuA
# 2: BL00611___leuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1576
# Identity: 1124/1576 (71.3%)
# Similarity: 1124/1576 (71.3%)
# Gaps: 101/1576 ( 6.4%)
# Score: 3978.5
#
#
#=======================================
BSNT_04109___ 0 -------------------------------------------------- 0
BL00611___leu 1 GTGCGAAAAATTAACTTTTTTGATACGACACTCCGTGACGGTGAACAGTC 50
BSNT_04109___ 1 -------------TTGAATACACAGGAGAAACTTGCCATAGCTAAGCAGC 37
||.||.||.||||||||.||.||.||.||..||||||
BL00611___leu 51 GCCGGGCGTTAATTTAAACACGCAGGAGAAGCTGGCGATCGCCCAGCAGC 100
BSNT_04109___ 38 TCGAAAGACTCGGGG-CAGATATCATTGAAGCGGGATTTCCCGCTTCGTC 86
|.||||.|||||||| || |.||.||.||||||||.|||||||||||.||
BL00611___leu 101 TTGAAAAACTCGGGGTCA-ACATTATGGAAGCGGGCTTTCCCGCTTCATC 149
BSNT_04109___ 87 CCGAGGTGACTTTTTA--GCTGTTCAGGAAATCGCTAGAACCATTAAAAA 134
||..||.|| |||.| ||.||..|.||||||||.||.||.||||||||
BL00611___leu 150 CCCCGGGGA--TTTCAATGCAGTAAAAGAAATCGCAAGGACGATTAAAAA 197
BSNT_04109___ 135 TTGTTCAGTGACTGGTCTGGCCCGTTGTGTAAAAGGTGATATTGATGCTG 184
.|||||.||.||.||.||.|||||.|.|||.|||||.|||||.||..|.|
BL00611___leu 198 CTGTTCGGTAACAGGGCTTGCCCGCTCTGTCAAAGGAGATATCGACTCGG 247
BSNT_04109___ 185 CTTGGGAAGCGTTAAAGGATGGTGCTTACCCGAGAATTCATGTTTTTATC 234
|.|||||||||.|.||.||.||.|||.|.||.||..||||..||||||||
BL00611___leu 248 CGTGGGAAGCGCTCAAAGACGGAGCTGAACCAAGGCTTCACATTTTTATC 297
BSNT_04109___ 235 GCCACATCGGACATTCATTTGAAACACAAGCTGAAAATGACACGTGAGCA 284
|||||.||.|||||.||.||.|||.|.||||||||||..||.||.||.||
BL00611___leu 298 GCCACTTCTGACATCCACTTAAAATATAAGCTGAAAAAAACGCGCGAACA 347
BSNT_04109___ 285 AGTCATTGAA-AGAGCAGTTGAAATGGTGACATACGCAAAAGAACGTTTT 333
.||..|.||| || ||.||.|.||||||||.||||||.||||||||.||.
BL00611___leu 348 GGTTCTGGAACAG-GCGGTCGCAATGGTGAAATACGCCAAAGAACGCTTC 396
BSNT_04109___ 334 CCGGTTGTGCAATGGTCAGCTGAAGATGCCTGCCGCACTGAGCTGCCGTT 383
|||.|.||.||.|||||.||.||||||||.|||||.|||||.||.|||||
BL00611___leu 397 CCGATCGTCCAGTGGTCTGCCGAAGATGCGTGCCGGACTGATCTTCCGTT 446
BSNT_04109___ 384 TCTGGCAGAAATCGT---CGAGAAAGTGATTGACGCAGGCGCCAGTGTTA 430
|.|.||.||.||.|| || |||||||.|.|||.||.||...|||..
BL00611___leu 447 TTTAGCCGAGATTGTAAGCG---AAGTGATCGCCGCGGGAGCGGATGTCG 493
BSNT_04109___ 431 TCAATCTTCCAGACACTGTCGGCTACCTGGCTCCAGCGGAATACGGAAAT 480
|||||||.||.||.||.|||||.||..|.||.||.||.||.|||||||||
BL00611___leu 494 TCAATCTGCCGGATACGGTCGGTTATTTAGCGCCTGCCGAGTACGGAAAT 543
BSNT_04109___ 481 ATCTTTAAATATATGAAGGAAAACGTTCCGAACATTC--ACAAAGCAAAG 528
|||||....|||||.||.|||||.| .|||.| ||.| ||||||...||
BL00611___leu 544 ATCTTCCGCTATATTAAAGAAAATG-CCCGCA-ATGCCGACAAAGTCCAG 591
BSNT_04109___ 529 CTTTCAGCCCACTGTCATGATGATTTAGGAATGGCAGTTGCAAACTCTCT 578
|||||||||||.||.||.|||||.||.||.|||||.||.||.||||||.|
BL00611___leu 592 CTTTCAGCCCATTGCCACGATGACTTGGGCATGGCTGTCGCCAACTCTTT 641
BSNT_04109___ 579 TGCTGCGATTGAAAATGGCGCTGATCAAATCGAATGCGCT-GTGAACGGG 627
.||||||||||||||.||.||.||||||.|||||| ||.| .|.|||||.
BL00611___leu 642 GGCTGCGATTGAAAACGGAGCGGATCAAGTCGAAT-CGGTCATCAACGGC 690
BSNT_04109___ 628 ATCGGTGAAAGAGCCGGAAACGCGGCATTAGAGGAAATTGCCGTAGCCCT 677
||.||.||||||||.||.|||||..|..|.||.|||||.|||||.|||||
BL00611___leu 691 ATAGGCGAAAGAGCGGGGAACGCCTCGCTTGAAGAAATCGCCGTCGCCCT 740
BSNT_04109___ 678 CCATACCAGAAAAGATTTCTACCAAGTCGAAACAGGCATTACA-CTGAAC 726
|||||.|.||||||||||||||||.|..|||.||...||| || |||||.
BL00611___leu 741 CCATATCCGAAAAGATTTCTACCAGGCGGAATCAACGATT-CAGCTGAAT 789
BSNT_04109___ 727 GAGATTAAGAGAACAAGTGATTTAGTAAGCAAACTGACAGGCATGGCTGT 776
||||||||..|.||||||||||||||.|||||.|||||.||||||||.||
BL00611___leu 790 GAGATTAAACGGACAAGTGATTTAGTGAGCAAGCTGACCGGCATGGCCGT 839
BSNT_04109___ 777 CCCACGCAACAAAGCGGTTGTTGGAGATAATGCATTTGCTCATGAATCAG 826
.||.||.||||||||||||||.||.||||||||.|||||.||.|||||||
BL00611___leu 840 GCCGCGGAACAAAGCGGTTGTCGGCGATAATGCCTTTGCCCACGAATCAG 889
BSNT_04109___ 827 GCATCCATCAGGACGGCTTTTTAAAGGAAAAATCGACTTATGAAATTATT 876
||||.||.|||||||||||.|||||.||||||.|.||.||||||||||||
BL00611___leu 890 GCATTCACCAGGACGGCTTCTTAAAAGAAAAAACAACATATGAAATTATT 939
BSNT_04109___ 877 TCACCGGAGCTTGTCGGCGT--AACCGCAGATGCGCTTGTCCTAGGTAAA 924
||.|||||.||||||||||| ||.|| |||||||||||.||.||.||.
BL00611___leu 940 TCTCCGGAACTTGTCGGCGTGAAAACG--GATGCGCTTGTGCTCGGAAAG 987
BSNT_04109___ 925 CATTCCGGACGCCACGCATTTAAAGACCGGCTG----ACTGCTTTAGGAT 970
|||||.||.|||||||||||||||||...|||| || .|.||||
BL00611___leu 988 CATTCAGGGCGCCACGCATTTAAAGATAAGCTGCAAAAC----CTCGGAT 1033
BSNT_04109___ 971 TCCAATTTGACAG-TGAAGAGATTAATAAATTCTTTACGATGTTCAAAGA 1019
||||..||| .|| .|||||.||.|||||||||||.|..||.||.|||||
BL00611___leu 1034 TCCAGCTTG-GAGAAGAAGAAATCAATAAATTCTTCAACATTTTTAAAGA 1082
BSNT_04109___ 1020 GTTGACTGAGAAGAAAAAAGAAATCACTGATGAGGATCTTGTTTCTCTTA 1069
|.|.||.|..||||||||.|||.|.||.|||||.|||||..|.||.||.|
BL00611___leu 1083 GCTTACCGGAAAGAAAAAGGAATTTACGGATGAAGATCTCATCTCGCTGA 1132
BSNT_04109___ 1070 TTTTAGAAGAAAAAGTAACAGATCGCAAGATTGGGTATGAATTTCTTTCT 1119
|..|.|||||.|||....||||.|||||.||.||.|||||.|||.||||.
BL00611___leu 1133 TACTCGAAGAGAAAACGGCAGACCGCAAAATCGGCTATGATTTTATTTCA 1182
BSNT_04109___ 1120 CTGCAAGTACATTACGGAACAAGTCAGGTCCCTACGGCTACTCTTTCGTT 1169
|||||.||.||||||||.||....|||||.||.||.||.||..|.||..|
BL00611___leu 1183 CTGCAGGTTCATTACGGCACCTCCCAGGTTCCGACAGCAACAGTCTCCCT 1232
BSNT_04109___ 1170 GAAAAATCAAGAAAATGCAGAGCTTATTCAGGAAGCTGCAACTGGAGCTG 1219
.|||.||||.||||..|...||.|.||.||||||||.||.||.|||||.|
BL00611___leu 1233 TAAAGATCAGGAAACGGATCAGGTCATCCAGGAAGCGGCGACCGGAGCGG 1282
BSNT_04109___ 1220 GAAGTGTGGAAGCAATCTACAATACGCTTGAGCGCTGCATCGATAAGGAC 1269
||||.||.|||||..|.|||||.|||||..|||||||.||.|||||.||.
BL00611___leu 1283 GAAGCGTTGAAGCGGTGTACAACACGCTGAAGCGCTGTATGGATAAAGAA 1332
BSNT_04109___ 1270 GTGGAGCTTTTAGACTACCGCATTCAGTCTAACAGAAAAGGCGAAGATGC 1319
||..||||..|.||.|||||.|||||.||.|||.|.||.||..|.|||||
BL00611___leu 1333 GTCCAGCTCCTTGATTACCGGATTCAATCCAACCGCAAGGGACAGGATGC 1382
BSNT_04109___ 1320 ATTTGCCCAGGTGTATGTAAGAGTTTTGGTGAACGGAAAAGAATCAGCAG 1369
|||.||.||.||.||.||.||.||..||.|..|.|||||||||||.|.||
BL00611___leu 1383 ATTCGCGCAAGTATACGTCAGGGTGATGATCGATGGAAAAGAATCGGGAG 1432
BSNT_04109___ 1370 GTCGGGGCATAGCGCAAGACGTATTAGAAGCATCAGCGAAAGCCTATTTG 1419
|.||.||..|.||.||.||.||..|.||||||||.||.||||||||.|||
BL00611___leu 1433 GACGCGGGGTTGCCCAGGATGTTCTCGAAGCATCTGCCAAAGCCTACTTG 1482
BSNT_04109___ 1420 AACGCAGTCAACCGTCAAT-TGGTTTTCCAGTCGAATATGAGCGGATTGA 1468
||.||.||.||||| |.|| |.||.||..||.||||||.|...||||||.
BL00611___leu 1483 AATGCTGTGAACCG-CTATCTCGTATTGAAGACGAATACGGAAGGATTGT 1531
BSNT_04109___ 1469 AAAACCACACAGCTGTCGGATCATAA 1494
.|||.||..|.|||||.|||||||||
BL00611___leu 1532 CAAAACAGGCGGCTGTAGGATCATAA 1557
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