Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_04108 and BL00612

See Amino acid alignment / Visit BSNT_04108 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence dna-align/BSNT_04108___leuB.1.5803.seq
#    -bsequence dna-align/BL00612___leuB.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04108___leuB-BL00612___leuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04108___leuB-BL00612___leuB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04108___leuB
# 2: BL00612___leuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1150
# Identity:     837/1150 (72.8%)
# Similarity:   837/1150 (72.8%)
# Gaps:          89/1150 ( 7.7%)
# Score: 3014.0
# 
#
#=======================================

BSNT_04108___      1 TTGAAGAAACGTATTGCTCTATTGCCCGGAGACGGGATCGGCCCTGAAGT     50
                     |||||.|||||.||.||.||.||||||||.|||||.||.||.||.|||||
BL00612___leu      1 TTGAAAAAACGAATCGCACTTTTGCCCGGTGACGGAATTGGTCCCGAAGT     50

BSNT_04108___     51 ATTAGAATCAGCGACAGACGTACTGAAAAGTGTTGCCGAACGCTTTAACC    100
                     |||.||..|.||....||.||.||||||||.|||||.||||..|.|.|.|
BL00612___leu     51 ATTGGACGCGGCTGTTGATGTGCTGAAAAGCGTTGCTGAACATTATCAGC    100

BSNT_04108___    101 ATGAATTTGAATTTGAATATGGCCTGATTGGAGGGGCGGCTATTGATGAA    150
                     |||||||.|||||||||||.||||||||.||.||||||||.|||||||| 
BL00612___leu    101 ATGAATTCGAATTTGAATACGGCCTGATCGGCGGGGCGGCAATTGATGA-    149

BSNT_04108___    151 CATCATAA--CCCCCTCCCGGAGGAAACCGTTGCTGCTTGTAAAAATGCA    198
                      ..||..|  .||.||.||.||||||||.||.||.||.||.|||..|||.
BL00612___leu    150 -GGCAGGAGCGCCGCTTCCTGAGGAAACTGTCGCCGCCTGCAAAGCTGCG    198

BSNT_04108___    199 GACGCGATATTGCTTGGTGCTGTCGGCGGACCGAAATGGGATCAAAATCC    248
                     |||||.||.|||||.||.|||||.|||||.||||||||||||||||||||
BL00612___leu    199 GACGCCATTTTGCTCGGAGCTGTAGGCGGGCCGAAATGGGATCAAAATCC    248

BSNT_04108___    249 TTCGGAACTGAGACCGGAAAAAGGGCTGCTCAGCATCAGAAAACAGCTTG    298
                     |||.||.|||.|.||.|||||||||||||||..||||.|.||.|||||.|
BL00612___leu    249 TTCTGAGCTGCGGCCTGAAAAAGGGCTGCTCGCCATCCGCAAGCAGCTCG    298

BSNT_04108___    299 ATTTGTTTGCGAATTTACGGCCTGTGAAGGTATTTGAAAGCCTTTCTGAT    348
                     ||.|.|||||.|||.|.||||||||.||.|||||||||||||||.|.|..
BL00612___leu    299 ATCTTTTTGCCAATCTGCGGCCTGTTAAAGTATTTGAAAGCCTTGCGGGA    348

BSNT_04108___    349 GCTTCGCCTTTGAAAAAAGAATATATAGATAATGTTGATTTCGTTATCGT    398
                     |||||.||.||.||||..||||||||.||...||||||.||.||.|||||
BL00612___leu    349 GCTTCTCCGTTAAAAACCGAATATATCGAAGGTGTTGACTTTGTCATCGT    398

BSNT_04108___    399 TCGTGAACTCACAGGCGGCTTGTATTTCGGCCAGCCGAGCAAACGCTATG    448
                     |||.||.||.||.||||||||||||||.||..||||||||.|.|..||.|
BL00612___leu    399 TCGCGAGCTGACGGGCGGCTTGTATTTTGGAAAGCCGAGCGAGCAGTACG    448

BSNT_04108___    449 T-AAACACTGAA-GGTGAGCAGGAAGCAGTAGATACACTGTTTTATAAGC    496
                     | ||.||  ||| ||.|||.|.|||||.||.||.||.|||||||||||  
BL00612___leu    449 TCAATCA--GAACGGCGAGGAAGAAGCGGTTGACACGCTGTTTTATAA--    494

BSNT_04108___    497 GAA---CGGAAATTGAACGAGTGATCAGAGAGGGCTTCAAAATGGCGGCA    543
                      ||   |||||||.|||.|.||.|||||.||.|.||||.||||||| |||
BL00612___leu    495 -AAAGTCGGAAATGGAAAGGGTCATCAGGGAAGCCTTCCAAATGGC-GCA    542

BSNT_04108___    544 GCCA---GAAAAGGCAAAGTGACCTCTGTAGATAAAGCGAATGTTCTTGA    590
                     |  |   |||||||||||||||||||.||.||||||||.||.||.|||||
BL00612___leu    543 G--AGTCGAAAAGGCAAAGTGACCTCCGTTGATAAAGCCAACGTCCTTGA    590

BSNT_04108___    591 ATCAAGCCGGCTGTGGCGTGAAG-TGGCTGAGGACGTTGCGAAAGAATTT    639
                     .||||||...||.||||| .||| .|||.||.||.||.||||||||.|||
BL00612___leu    591 GTCAAGCAAACTATGGCG-CAAGACGGCGGAAGAAGTGGCGAAAGAGTTT    639

BSNT_04108___    640 CCTGATGTGAAGCTTGAGCACATGCTTGTGGATAACGCGGCCATGCAGCT    689
                     |||||.||.|||||||||||||||||.||.||.||.||.|||||||||||
BL00612___leu    640 CCTGACGTCAAGCTTGAGCACATGCTCGTCGACAATGCAGCCATGCAGCT    689

BSNT_04108___    690 AATCTATGCACC--GAATCAATTTGATGTCGTTGTGACTGAAAATATGTT    737
                     .||||||||.||  ||  ||.||||||.|..|.|||||.|||||.|||||
BL00612___leu    690 CATCTATGCGCCTGGA--CAGTTTGATATTATCGTGACAGAAAACATGTT    737

BSNT_04108___    738 CGGTGATATTTTAAGCGATGAAGCGTCCATGCTTACAGGCTCGCTCGGAA    787
                     |||.||||||||||||||||||||.||.|||||.||.||.||||||||.|
BL00612___leu    738 CGGCGATATTTTAAGCGATGAAGCATCGATGCTGACCGGATCGCTCGGCA    787

BSNT_04108___    788 TGCTCCCGTCAGCCAGCCTATCAAGCTCTGGTCTTCATCTGTTTGAACCT    837
                     ||||.|||||.||||||.|||||||||||||.||||||.|.|..||||||
BL00612___leu    788 TGCTGCCGTCGGCCAGCTTATCAAGCTCTGGACTTCATTTATACGAACCT    837

BSNT_04108___    838 GTTCATGGCTCCGCGCCTGATATTGCCGGTAAAGGGG--------TGGCA    879
                     ||.||.|||||.||.||||||||.||        |||        |.||.
BL00612___leu    838 GTGCACGGCTCGGCTCCTGATATCGC--------GGGACAGAACATTGCC    879

BSNT_04108___    880 AATCCGTTCGCAGCCATATTGTCAGCGGCAATGCTTTTGAGAACATCTTT    929
                     ||||||.|.||.||.||.|||||.|||||.|||.|..|.||.||.||.||
BL00612___leu    880 AATCCGCTTGCGGCGATCTTGTCCGCGGCTATGATGCTCAGGACGTCATT    929

BSNT_04108___    930 CGGGCTTGAAGAGGAAGCGAAAGCTGTAGAAGATGCGGTAAACAAAGTCT    979
                     |||.|||||||..||||||.|||||||.|||.||||.||..|..|||   
BL00612___leu    930 CGGTCTTGAAGCTGAAGCGCAAGCTGTTGAACATGCAGTCGATCAAG---    976

BSNT_04108___    980 TGGCTTCT-------GGGAAAAGAACAAAAGATTTGGCA-------CGGG   1015
                         ||||       ||.|||.|.||.||.||..|||||       ||  
BL00612___leu    977 ----TTCTCCGGGCAGGAAAACGGACGAAGGACCTGGCAAAAGGCTCG--   1020

BSNT_04108___   1016 GTGAAGAGTTCAGCAGCACTCAGGCCATTACAGAGGAAGTTAAGGCAGCA   1065
                       |||.|.|   |||..|||||..|.|||||||.||||||.||.||.||.
BL00612___leu   1021 --GAACATT---GCACAACTCAATCGATTACAGGGGAAGTAAAAGCCGCG   1065

BSNT_04108___   1066 AT--CATGAGTGAAAATACAATTTCTAATGT-GTGA--------------   1098
                     .|  || || .||.|||.|.|||||.||..| .|||              
BL00612___leu   1066 CTGGCA-GA-CGACAATGCCATTTCAAACATCATGACCGCTTACGTTTAA   1113


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.