Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04103 and BL00616
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:10
# Commandline: needle
# -asequence dna-align/BSNT_04103___ysoA.1.5803.seq
# -bsequence dna-align/BL00616___ysoA.2.5803.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04103___ysoA-BL00616___ysoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04103___ysoA-BL00616___ysoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04103___ysoA
# 2: BL00616___ysoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1051
# Identity: 719/1051 (68.4%)
# Similarity: 719/1051 (68.4%)
# Gaps: 89/1051 ( 8.5%)
# Score: 2350.5
#
#
#=======================================
BSNT_04103___ 1 ATGACGCATGACAAGAAGAACGCAAAAATTATTCCTTTTCCTCATCTGAA 50
||||.||||||||||||||||.|.||.||.||.||.||.||..|..|.||
BL00616___yso 1 ATGAAGCATGACAAGAAGAACTCGAAGATCATACCGTTCCCGAACGTAAA 50
BSNT_04103___ 51 AGACCGCCTTGTGGAAAAGGGGATGTCATCACTAAAGGAAAAAAAGTATC 100
.||.||..|.|||.|.||.||||||....|.||.||.|||||.||.||.|
BL00616___yso 51 GGAGCGTTTAGTGCACAAAGGGATGGGTGCGCTCAAAGAAAAGAATTACC 100
BSNT_04103___ 101 AAGAAGCGCTTGAACTGTTTTCAGAAGCGATGAAATATGATGATACTGAA 150
|.||||||||....||||||||.|||||||.|...|||.|||||...|||
BL00616___yso 101 ATGAAGCGCTCAGGCTGTTTTCTGAAGCGAAGCGCTATAATGATGAGGAA 150
BSNT_04103___ 151 TCCGATCTTCACTTAGGGATGGCCATCTGCTTTTTAGAGCTGGGCGAGCT 200
||.|||.||.|..|.||.||||||||||||.|..|.||..|.||||||||
BL00616___yso 151 TCTGATATTTATCTGGGAATGGCCATCTGCCTGCTTGAAATCGGCGAGCT 200
BSNT_04103___ 201 GGAAGAGGCAAAAAGCGTGTGCGAGAAGATGCTCAAAGAAGGTTATGGCC 250
.|||||.||.|||.||.|.|||||.||.|||||.||.|||||..|.||||
BL00616___yso 201 TGAAGAAGCGAAAGGCATCTGCGAAAAAATGCTGAAGGAAGGCCACGGCC 250
BSNT_04103___ 251 ATTATTTTACGGTTTTGCAGGTGTACATGACCATCTTAATTCAGCTCAAA 300
|.||||||||.|||||.||.||.||.|||||.||.|||||.|||||||.|
BL00616___yso 251 ACTATTTTACCGTTTTACAAGTCTATATGACGATTTTAATCCAGCTCAGA 300
BSNT_04103___ 301 AAATACGAGGAAGTCAAAAGCACCATTGAAGCCGTTTTGGAAGAAAATCA 350
.|||||||..||||.|||...||.||.|||||.||..|.||||||||..|
BL00616___yso 301 CAATACGAAAAAGTTAAAGAAACGATCGAAGCTGTACTCGAAGAAAACAA 350
BSNT_04103___ 351 GCTGCCGGCAGAAAGCGCCGAGCAATTTTATAAGCTGCTGGATTTCAGCC 400
|||.||..|.||||||||.||.||.||||||||.||.||.||||||||||
BL00616___yso 351 GCTTCCTCCTGAAAGCGCGGAACAGTTTTATAAACTCCTTGATTTCAGCC 400
BSNT_04103___ 401 GGAAAATGAC---CGATCCGGATCGTGAGGA------CGAGG--CTT--- 436
|.||.||||| .||.||||..|.|||||| |||.| |||
BL00616___yso 401 GCAAGATGACGGAAGACCCGGGGCCTGAGGACATCACCGAAGACCTTCCC 450
BSNT_04103___ 437 GGGCCGAAGAATATGAGGATACAATTGA-CACCGAGAAAGTGC------- 478
|.|.||.|| |||| |||| || .||||| ||
BL00616___yso 451 GAGACGGAG-----GAGG------TTGATCA---GGAAAG-GCTTTTGAA 485
BSNT_04103___ 479 TGGCAAGCCCTGAGGAGCAAATGAATCTCATTCATTCCTTAAAAGACCGT 528
||.|| |.||.|||||..|.||.||..||||.....|.||.|||||.
BL00616___yso 486 TGACA----CGGAAGAGCAGGTTAAGCTTCTTCACGGGCTGAAGGACCGC 531
BSNT_04103___ 529 AACGTAGCAAAGTATACAGGATTGCTCAAAACAATCCTCCAAGACCCCTC 578
||..|..|||..||||..||.|||.|.|||||.||.||.|||.|||| .
BL00616___yso 532 AATCTGACAAGCTATATCGGCTTGTTGAAAACGATTCTGCAAAACCC--G 579
BSNT_04103___ 579 AGCCCAC--CCGATTATCAAAACGATGATT-GTCATGCTGTT------GA 619
|||.||| ||..|..|.|||||||||||| .||| |||.|| |.
BL00616___yso 580 AGCGCACATCCTGTCGTAAAAACGATGATTCTTCA-GCTTTTAGCCGAGT 628
BSNT_04103___ 620 CTGAGCATGAGTACAGTAAGCC------TGTACACATTAGTAAATTTGGC 663
|.||.||||| .||||| ||| |.|| |||||||||
BL00616___yso 629 CAGACCATGA------AAAGCCGACGCTTGT-CGCA-----AAATTTGGC 666
BSNT_04103___ 664 GAGTCGTTGACAATTGAACCGTCTGAGATTGTTCCGCCTGATGCCGCGCC 713
||.|||.||||||||.|.|||.|.||||..||...||||||||.|..|||
BL00616___yso 667 GATTCGATGACAATTAATCCGACAGAGACGGTCAAGCCTGATGACATGCC 716
BSNT_04103___ 714 GATTCTGCACCGTGTTCTCAGGGTGCTGGATGAGACACTTGGAAATGAAA 763
|||..|..|.|.||||||.||.|||||.|||||.||.||.||.|||||||
BL00616___yso 717 GATATTAAAGCATGTTCTGAGCGTGCTCGATGATACGCTGGGGAATGAAA 766
BSNT_04103___ 764 ATCCAACCTTATATGCA-GCAGTAGAGGAATTGTGGAGAAGACATTTGTA 812
||||.||..|.|| .|| ||.||.||.||..||||||||||.|||.|.||
BL00616___yso 767 ATCCCACGCTGTA-CCAGGCGGTCGAAGAGCTGTGGAGAAGGCATATTTA 815
BSNT_04103___ 813 CGTTTTATATCCGTTCCAGCCGAAATTGCTGTCGGCT--------GACCT 854
|||..|.||||||||.|||||||||| .|| ||.||
BL00616___yso 816 CGTCCTCTATCCGTTTCAGCCGAAAT--------ACTCAAACCGCGAGCT 857
BSNT_04103___ 855 TTGGGCGGCTGCCCTTCATAAAGTCGGTTACGAGATGCACGGGATTGAAA 904
.|||||.|||||.||.|||||||||||.||.||||||||||||||.||.|
BL00616___yso 858 CTGGGCTGCTGCACTGCATAAAGTCGGATATGAGATGCACGGGATCGACA 907
BSNT_04103___ 905 TTGAAAGCGAAGAACTTCATATGATGTATGAATTTACCGACAGAGAACTC 954
|.||.|..||.||.||||||||..|.||||||||.|..||||||.|.||.
BL00616___yso 908 TCGATAAAGAGGAGCTTCATATTCTCTATGAATTCAATGACAGACAGCTT 957
BSNT_04103___ 955 GATGAAGCTTGCACAATGTTAAAAGATATTGAAGAAATTTCTTATTTGTA 1004
||.|||||.|||.|..||.|.|||||.||.||||||||||||||||||||
BL00616___yso 958 GACGAAGCCTGCGCGCTGATCAAAGACATAGAAGAAATTTCTTATTTGTA 1007
BSNT_04103___ 1005 A 1005
|
BL00616___yso 1008 A 1008
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