Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04084 and BL00630

See Amino acid alignment / Visit BSNT_04084 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:08
# Commandline: needle
#    -asequence dna-align/BSNT_04084___ysxE.1.5803.seq
#    -bsequence dna-align/BL00630___ysxE.2.5803.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04084___ysxE-BL00630___ysxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04084___ysxE-BL00630___ysxE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04084___ysxE
# 2: BL00630___ysxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1107
# Identity:     699/1107 (63.1%)
# Similarity:   699/1107 (63.1%)
# Gaps:         165/1107 (14.9%)
# Score: 1976.5
# 
#
#=======================================

BSNT_04084___      1 ATGGAAGATACCCAATCGGTTCTTCAGGAATACGGACTGACTGCTCAATT     50
                     |||||||..|.|||.||.|||.|..|.||.|||||.||.||..||.|||.
BL00630___ysx      1 ATGGAAGGCATCCAGTCTGTTTTAAATGAGTACGGTCTTACGCCTGAATA     50

BSNT_04084___     51 TATTGAGCCTGTCAGTCCTCTTGTTTGGAAAGTGTATACAGACTACGGCA    100
                     |||.|||.|.||||||.|....||.||||||||||||||.||..||||..
BL00630___ysx     51 TATGGAGTCCGTCAGTTCAAAGGTGTGGAAAGTGTATACGGATCACGGTG    100

BSNT_04084___    101 TATTTGCCCTGAAAAAATTGAAAGAAGGTCGCGG---CAAG-------CA    140
                     |||||||.||||||||||||          ||||   ||||       |.
BL00630___ysx    101 TATTTGCTCTGAAAAAATTG----------GCGGCTTCAAGAAACACCCG    140

BSNT_04084___    141 TTTTACAGATCATATGGTGGCGATTGAGGAAAAAGGCTTTCGTTCA----    186
                     .||.||.||.||.|||.|...|.|.||||||||||||     |.||    
BL00630___ysx    141 CTTCACGGAACAGATGATCATGCTGGAGGAAAAAGGC-----TACAGGCA    185

BSNT_04084___    187 -TTCGTTCCCGTTTACAGAA----CAAATAGCGGTGAGTTTTTCTCAGCA    231
                      ||||||||.||.||..|||    ||.|    ||.||.|||||..| |||
BL00630___ysx    186 GTTCGTTCCTGTCTATCGAAACCGCACA----GGCGAATTTTTAAC-GCA    230

BSNT_04084___    232 GGCATACAATACGG---AGATACCTACTATTTAATGCCTTGGCTCCAAT-    277
                     .||        |||   ||||..||.||||.|.|||||.||||| .|.| 
BL00630___ysx    231 AGC--------CGGAGAAGATGTCTGCTATCTCATGCCCTGGCT-TACTC    271

BSNT_04084___    278 TTGACCAA--GAGGAAGAACGGGATCAGAAACATGCTTATTTATTTAGAG    325
                     ||||  ||  ||||||||.||||||||.|||||.|..|||.|.||||.||
BL00630___ysx    272 TTGA--AAGGGAGGAAGAGCGGGATCAAAAACACGAATATATGTTTAAAG    319

BSNT_04084___    326 AAACAGCCCGTCTTCACGAGAGAACCGCGCAGGAACTAAAG--------G    367
                     |||..||.|.|||||||.||.|.||      ||||  ||||        |
BL00630___ysx    320 AAATCGCTCTTCTTCACCAGCGGAC------GGAA--AAAGAGCTCGGCG    361

BSNT_04084___    368 TTAGACGTGATGAGA---TTGAACGTTAT-TACGGGC-AAACGAAAAAAA    412
                     |.||.||.||.||.|   |.|.||..||| .||||.| |||||.|||   
BL00630___ysx    362 TGAGGCGGGAAGAAATACTCGGACACTATGAACGGACAAAACGGAAA---    408

BSNT_04084___    413 AGTGGGAAC------AAGATAAAATTTTCTATG-AGCAGT--TTGTGGAT    453
                       |||||||      ||.|.|||      |||| ||||.|  |..||   
BL00630___ysx    409 --TGGGAACAGCAAAAACAGAAA------TATGAAGCATTCATCATG---    447

BSNT_04084___    454 AGAGCGGAGAAGGAGTGGTACCTTTCTCCTTTTGAACTCCA---GGCCAT    500
                     |.||||||.||.||.|||||..|.||.||.||..|.||.||   ||||||
BL00630___ysx    448 AAAGCGGAAAACGAATGGTATATGTCCCCGTTCCAGCTTCAGGCGGCCAT    497

BSNT_04084___    501 AACCTATTTTTCAGAAACCATTTCCGCGGTGAATTTTGCGCTGGAACGGT    550
                        .|||||...|||.||.||.||.||.|...|.||||||||.|..||..
BL00630___ysx    498 ---GTATTTCAAAGAGACGATATCAGCTGCCGACTTTGCGCTCGCCCGCC    544

BSNT_04084___    551 TGGAGGACTGGTATGAGTCTGCAAAG---GAAAAAGACGT-TTCAAGGGT    596
                     |.||.||.|||.||||   .||.|.|   |||||||| || |.|.||..|
BL00630___ysx    545 TTGAAGATTGGCATGA---AGCCATGAGAGAAAAAGA-GTCTGCCAGAAT    590

BSNT_04084___    597 TGTAATGAACCAC-GGCAGCCTGTCTATACACCATTTTCTGTATAATGAT    645
                     .||..|.|||||| |||| ||||||..|.|..||||||||.|||||.|||
BL00630___ysx    591 GGTCTTAAACCACGGGCA-CCTGTCCGTTCGGCATTTTCTCTATAACGAT    639

BSNT_04084___    646 GCCGGGACCGGATATTTTACAAACTTCGAAAGAGCATCTGTCGG----TC    691
                     .||||.||.||.||.|||||.|||||.||.|.||       |||    |.
BL00630___ysx    640 ACCGGAACGGGTTACTTTACGAACTTTGAGAAAG-------CGGGACATG    682

BSNT_04084___    692 CGCCGC---AAAACGACCTGCTCGGCTTTTATACAAAAATG-TTCAGAGG    737
                     ||||||   .|||.||.||..|||..||||.|||.|.|||| ||.|||  
BL00630___ysx    683 CGCCGCCTGCAAATGATCTCATCGTATTTTTTACTAGAATGTTTAAGA--    730

BSNT_04084___    738 CTTTCCGAAAGC------TTGTCCGGAATGCGTCGAATGGTTTTATGGAT    781
                          ||||..|      .||..|||||||.||..|.|||||||||...|
BL00630___ysx    731 -----CGAACCCCGTTATGTGCACGGAATGTGTAAACTGGTTTTATACGT    775

BSNT_04084___    782 AT-ACGAAATC-ATTCCCTTTGCGTGAAGCGGAAGTCAGCCTTTTTCTCA    829
                     || ||.|..|| ||  ||||||||.||.|..|||.||.||.|.||.||||
BL00630___ysx    776 ATCACAATGTCTAT--CCTTTGCGGGAGGAAGAAATCGGCTTATTCCTCA    823

BSNT_04084___    830 GCTATATGGCATATCCGGCAGCCATGTA--CAAGGTGCTGAACGGTTATC    877
                     ||||||||||.||.||||  |.|.||||  |...||.||||||.|.|| |
BL00630___ysx    824 GCTATATGGCTTACCCGG--GGCCTGTATTCGGCGTACTGAACCGCTA-C    870

BSNT_04084___    878 AAAC-TGGGAAAAGACAGCAT----GAAAAAGAGGAATGTACACAATTAT    922
                     .||| ||.|||..|.|    |    ||||||||.|..||||||....|.|
BL00630___ysx    871 GAACATGAGAAGGGGC----TCGGGGAAAAAGAAGCCTGTACAAGGCTTT    916

BSNT_04084___    923 TAAAGGCTTATTGGCAAATGAAAAATATAGAGCCGTTTGTGATGAAAATC    972
                     |||||||.||.||||||||||||||....||||||.|||||||||..||.
BL00630___ysx    917 TAAAGGCGTACTGGCAAATGAAAAACGCTGAGCCGCTTGTGATGAGCATT    966

BSNT_04084___    973 CATCAGATTGAACAAGAGAAAAAATTTCAGGCTGAAAACGAGTCCACGTC   1022
                     ||..|||..|||.||.|.|.||||.|.||||..||||..||||||.|.||
BL00630___ysx    967 CACGAGACGGAAGAAAACAGAAAACTGCAGGAAGAAACAGAGTCCCCATC   1016

BSNT_04084___   1023 TTAA---   1026
                     .|.|   
BL00630___ysx   1017 ATCATGA   1023


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